Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MYO16-AS1 Gene

Subcategory (RNA class) for MYO16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYO16-AS1 Gene

  • MYO16 Antisense RNA 1 2 3 5
  • MYO16 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYO16-AS1 Gene

Previous GeneCards Identifiers for MYO16-AS1 Gene

  • GC00U933368
  • GC13M109817

Summaries for MYO16-AS1 Gene

GeneCards Summary for MYO16-AS1 Gene

MYO16-AS1 (MYO16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MYO16-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYO16-AS1 Gene

Genomics for MYO16-AS1 Gene

GeneHancer (GH) Regulatory Elements for MYO16-AS1 Gene

Promoters and enhancers for MYO16-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I109253 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 27.5 -55.0 -55001 6.5 PKNOX1 FOXA2 SIN3A RAD21 ETS1 RFX5 YY1 RCOR1 FOS DEK MYO16-AS1 ENSG00000275216
GH13I109242 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 22 -42.8 -42849 4.2 JUN TEAD4 TAL1 MAX SIN3A BACH1 RFX5 TCF12 GATA3 ZNF316 MYO16-AS1 ENSG00000275216
GH13I109263 Enhancer 0.9 Ensembl ENCODE dbSUPER 18.8 -64.6 -64637 5.6 SP1 USF1 POLR2A USF2 SIN3A MYO16-AS1 ENSG00000275216
GH13I109270 Enhancer 1.1 Ensembl ENCODE dbSUPER 13.3 -72.3 -72268 5.6 CTCF JUN TEAD4 TAL1 SIN3A RAD21 RFX5 POLR2A NFYB RCOR1 MYO16-AS1 ENSG00000275216 LINC00370
GH13I109153 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.7 +43.4 43378 9.3 HDGF SMAD1 RB1 SIN3A BMI1 BATF KLF5 IRF4 RAD21 ZNF207 IRS2 MYO16-AS1 MYO16 LOC105370356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MYO16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MYO16-AS1 Gene

Genomic Locations for MYO16-AS1 Gene
chr13:109,163,902-109,201,483
(GRCh38/hg38)
Size:
37,582 bases
Orientation:
Minus strand
chr13:109,816,250-109,853,831
(GRCh37/hg19)

Genomic View for MYO16-AS1 Gene

Genes around MYO16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYO16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYO16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYO16-AS1 Gene

Proteins for MYO16-AS1 Gene

Post-translational modifications for MYO16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYO16-AS1 Gene

Domains & Families for MYO16-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYO16-AS1 Gene

Function for MYO16-AS1 Gene

Phenotypes From GWAS Catalog for MYO16-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYO16-AS1 Gene

Localization for MYO16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MYO16-AS1 Gene

Pathways & Interactions for MYO16-AS1 Gene

SuperPathways for MYO16-AS1 Gene

No Data Available

Interacting Proteins for MYO16-AS1 Gene

Gene Ontology (GO) - Biological Process for MYO16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYO16-AS1 Gene

Drugs & Compounds for MYO16-AS1 Gene

No Compound Related Data Available

Transcripts for MYO16-AS1 Gene

mRNA/cDNA for MYO16-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYO16-AS1 Gene

MYO16 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MYO16-AS1 Gene

No ASD Table

Relevant External Links for MYO16-AS1 Gene

GeneLoc Exon Structure for
MYO16-AS1
ECgene alternative splicing isoforms for
MYO16-AS1

Expression for MYO16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYO16-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MYO16-AS1 Gene

This gene is overexpressed in Lung (x18.5), Nerve - Tibial (x8.4), and Whole Blood (x6.4).

SOURCE GeneReport for Unigene cluster for MYO16-AS1 Gene:

Hs.655942
genes like me logo Genes that share expression patterns with MYO16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYO16-AS1 Gene

Orthologs for MYO16-AS1 Gene

Evolution for MYO16-AS1 Gene

ENSEMBL:
Gene Tree for MYO16-AS1 (if available)
TreeFam:
Gene Tree for MYO16-AS1 (if available)

No data available for Orthologs for MYO16-AS1 Gene

Paralogs for MYO16-AS1 Gene

No data available for Paralogs for MYO16-AS1 Gene

Variants for MYO16-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYO16-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000327198 -- 109,167,579(-) A/T upstream_transcript_variant
rs1000378161 -- 109,167,950(-) A/G upstream_transcript_variant
rs1001368341 -- 109,167,280(-) G/A non_coding_transcript_variant
rs1002053296 -- 109,166,580(-) G/A intron_variant
rs1003181047 -- 109,163,779(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MYO16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv510366 OTHER sequence alteration 20534489
nsv563071 CNV gain 21841781
nsv832718 CNV gain 17160897

Additional Variant Information for MYO16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYO16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYO16-AS1 Gene

Disorders for MYO16-AS1 Gene

Additional Disease Information for MYO16-AS1

No disorders were found for MYO16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYO16-AS1 Gene

Publications for MYO16-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for MYO16-AS1 Gene

Sources for MYO16-AS1 Gene

Content
Loading form....