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Aliases for MYO16-AS1 Gene

Subcategory (RNA class) for MYO16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYO16-AS1 Gene

  • MYO16 Antisense RNA 1 2 3 5
  • MYO16 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYO16-AS1 Gene

Previous GeneCards Identifiers for MYO16-AS1 Gene

  • GC00U933368
  • GC13M109817

Summaries for MYO16-AS1 Gene

GeneCards Summary for MYO16-AS1 Gene

MYO16-AS1 (MYO16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYO16-AS1 Gene

Genomics for MYO16-AS1 Gene

Regulatory Elements for MYO16-AS1 Gene

Enhancers for MYO16-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F109253 1.1 FANTOM5 Ensembl ENCODE 27.5 -55.0 -55002 6.5 PKNOX1 SIN3A RAD21 RFX5 YY1 SCRT2 RCOR1 FOS DEK USF2 MYO16-AS1 ENSG00000275216
GH13F109242 1.2 FANTOM5 Ensembl ENCODE 22 -42.8 -42849 4.2 TAF1 TAL1 JUN MAX BACH1 RFX5 ZNF316 GATA3 GATA2 NCOR1 MYO16-AS1 ENSG00000275216
GH13F109263 1.2 FANTOM5 Ensembl ENCODE 18.8 -65.1 -65122 6.5 TAF1 POLR2A HNF4G CHD1 SIN3A RAD21 MYO16-AS1 ENSG00000275216
GH13F109270 1.3 Ensembl ENCODE 13.3 -72.1 -72113 5.9 TBP CTCF TAF1 TAL1 JUN TEAD4 SIN3A RAD21 RFX5 FOSL1 MYO16-AS1 ENSG00000275216 LINC00370
GH13F109249 0.6 ENCODE 10.6 -48.8 -48761 1.3 REST MYO16-AS1 ENSG00000275216
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MYO16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MYO16-AS1 Gene

Chromosome:
13
Start:
109,163,902 bp from pter
End:
109,201,483 bp from pter
Size:
37,582 bases
Orientation:
Minus strand

Genomic View for MYO16-AS1 Gene

Genes around MYO16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYO16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYO16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYO16-AS1 Gene

Proteins for MYO16-AS1 Gene

Post-translational modifications for MYO16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYO16-AS1 Gene

Domains & Families for MYO16-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYO16-AS1 Gene

Function for MYO16-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYO16-AS1 Gene

Localization for MYO16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MYO16-AS1 Gene

Pathways & Interactions for MYO16-AS1 Gene

SuperPathways for MYO16-AS1 Gene

No Data Available

Interacting Proteins for MYO16-AS1 Gene

Gene Ontology (GO) - Biological Process for MYO16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYO16-AS1 Gene

Transcripts for MYO16-AS1 Gene

mRNA/cDNA for MYO16-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYO16-AS1 Gene

MYO16 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MYO16-AS1 Gene

No ASD Table

Relevant External Links for MYO16-AS1 Gene

GeneLoc Exon Structure for
MYO16-AS1
ECgene alternative splicing isoforms for
MYO16-AS1

Expression for MYO16-AS1 Gene

mRNA expression in normal human tissues for MYO16-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MYO16-AS1 Gene

This gene is overexpressed in Lung (x18.5), Nerve - Tibial (x8.4), and Whole Blood (x6.4).

SOURCE GeneReport for Unigene cluster for MYO16-AS1 Gene:

Hs.655942
genes like me logo Genes that share expression patterns with MYO16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MYO16-AS1 Gene

Orthologs for MYO16-AS1 Gene

Evolution for MYO16-AS1 Gene

ENSEMBL:
Gene Tree for MYO16-AS1 (if available)
TreeFam:
Gene Tree for MYO16-AS1 (if available)

No data available for Orthologs for MYO16-AS1 Gene

Paralogs for MYO16-AS1 Gene

No data available for Paralogs for MYO16-AS1 Gene

Variants for MYO16-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYO16-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10220137 -- 109,165,607(+) CTCCC(A/G)CAGGG intron-variant
rs10220141 -- 109,165,716(+) AAGGT(A/G)AGCCG intron-variant
rs111275819 -- 109,168,892(+) GGTAC(A/T)GTGTC intron-variant, upstream-variant-2KB
rs11299162 -- 109,167,380(+) AGGTT(-/A)AAAAA intron-variant, upstream-variant-2KB
rs113645984 -- 109,167,949(+) GGAAA(A/G)AATAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MYO16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv510366 OTHER sequence alteration 20534489
nsv563071 CNV gain 21841781
nsv832718 CNV gain 17160897

Relevant External Links for MYO16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYO16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYO16-AS1 Gene

Disorders for MYO16-AS1 Gene

Relevant External Links for MYO16-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYO16-AS1

No disorders were found for MYO16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYO16-AS1 Gene

Publications for MYO16-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for MYO16-AS1 Gene

Sources for MYO16-AS1 Gene

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