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Aliases for MYLK-AS1 Gene

Subcategory (RNA class) for MYLK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYLK-AS1 Gene

  • MYLK Antisense RNA 1 2 3 5
  • MYLK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYLK-AS1 Gene

Previous GeneCards Identifiers for MYLK-AS1 Gene

  • GC03P123306

Summaries for MYLK-AS1 Gene

GeneCards Summary for MYLK-AS1 Gene

MYLK-AS1 (MYLK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYLK-AS1 Gene

Genomics for MYLK-AS1 Gene

Regulatory Elements for MYLK-AS1 Gene

Enhancers for MYLK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G123652 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +68.0 68017 2.3 ELF3 TBP PKNOX1 ZSCAN4 ARID4B DMAP1 ZNF48 RAD21 YY1 HSF1 MYLK MYLK-AS2 HACD2 MYLK-AS1 ROPN1 PIR59914
GH03G123617 1.4 Ensembl ENCODE dbSUPER 11.7 +34.5 34525 5.1 TBP FOXA2 NFIB SIN3A RAD21 ZSCAN5C SCRT2 RCOR1 EGR2 ZHX2 HACD2 MYLK-AS1 GC03M123611 PIR59914
GH03G123631 1.2 FANTOM5 ENCODE dbSUPER 11 +47.1 47126 1.9 TBP EP300 ZIC2 NR2F2 JUND ZFHX2 POLR2A ATF3 GLIS1 HACD2 MYLK-AS1 ADCY5 PIR59914 MYLK-AS2
GH03G123633 1.1 Ensembl ENCODE dbSUPER 11 +49.1 49142 2.1 TFAP4 REST ZIC2 NR2F2 JUND ATF3 FOXP2 FOS HNF4A MYLK-AS1 HACD2 PIR59914 MYLK-AS2
GH03G123636 1 ENCODE dbSUPER 10.9 +51.6 51591 2.1 PKNOX1 ESRRA TAL1 RAD21 TCF12 CTBP1 NCOR1 POLR2A FOSL2 FOS HACD2 MYLK-AS2 MYLK MYLK-AS1 ROPN1 PIR59914
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MYLK-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MYLK-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000157451 -313 2801 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for MYLK-AS1 Gene

Chromosome:
3
Start:
123,585,513 bp from pter
End:
123,644,568 bp from pter
Size:
59,056 bases
Orientation:
Plus strand

Genomic View for MYLK-AS1 Gene

Genes around MYLK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYLK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYLK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYLK-AS1 Gene

Proteins for MYLK-AS1 Gene

Post-translational modifications for MYLK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYLK-AS1 Gene

Domains & Families for MYLK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYLK-AS1 Gene

Function for MYLK-AS1 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYLK-AS1 Gene

Localization for MYLK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MYLK-AS1 Gene

Pathways & Interactions for MYLK-AS1 Gene

SuperPathways for MYLK-AS1 Gene

No Data Available

Interacting Proteins for MYLK-AS1 Gene

Gene Ontology (GO) - Biological Process for MYLK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYLK-AS1 Gene

Transcripts for MYLK-AS1 Gene

mRNA/cDNA for MYLK-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYLK-AS1 Gene

MYLK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MYLK-AS1 Gene

No ASD Table

Relevant External Links for MYLK-AS1 Gene

GeneLoc Exon Structure for
MYLK-AS1
ECgene alternative splicing isoforms for
MYLK-AS1

Expression for MYLK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYLK-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MYLK-AS1 Gene

This gene is overexpressed in Esophagus - Muscularis (x4.5), Artery - Tibial (x4.2), and Esophagus - Gastroesophageal Junction (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of MYLK-AS1 Gene:

MYLK-AS1

SOURCE GeneReport for Unigene cluster for MYLK-AS1 Gene:

Hs.556600
genes like me logo Genes that share expression patterns with MYLK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYLK-AS1 Gene

Orthologs for MYLK-AS1 Gene

Evolution for MYLK-AS1 Gene

ENSEMBL:
Gene Tree for MYLK-AS1 (if available)
TreeFam:
Gene Tree for MYLK-AS1 (if available)

No data available for Orthologs for MYLK-AS1 Gene

Paralogs for MYLK-AS1 Gene

No data available for Paralogs for MYLK-AS1 Gene

Variants for MYLK-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYLK-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs387906781 Pathogenic 123,620,300(-) GACTG(C/T)CCTCT intron-variant, reference, missense, utr-variant-5-prime
rs112095273 Likely benign 123,613,160(+) TTCTC(C/T)AGCTC intron-variant, utr-variant-3-prime
rs11403360 Likely benign 123,613,339(+) TTTTT(-/T/TT)CCCAT intron-variant, utr-variant-3-prime
rs115815057 Likely benign 123,613,892(+) GCACT(A/T)GTATC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs115932105 Likely benign 123,613,686(+) GGGTG(A/G)GGAGA intron-variant, downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MYLK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23420 CNV loss 19812545
esv2667985 CNV deletion 23128226
esv3597627 CNV loss 21293372
esv3597628 CNV loss 21293372
nsv460837 CNV gain 19166990
nsv591428 CNV gain 21841781
nsv829708 CNV gain 17160897
nsv829709 CNV loss 17160897

Relevant External Links for MYLK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYLK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYLK-AS1 Gene

Disorders for MYLK-AS1 Gene

Relevant External Links for MYLK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYLK-AS1

No disorders were found for MYLK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYLK-AS1 Gene

Publications for MYLK-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MYLK-AS1 Gene

Sources for MYLK-AS1 Gene

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