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MYH16 Gene

pseudogene   GIFtS: 35
GCID: GC07P098870

Myosin, Heavy Chain 16 Pseudogene

(Previous names: myosin, heavy polypeptide 5, myosin, heavy polypeptide 16,...)
(Previous symbol: MYH5)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Myosin, Heavy Chain 16 Pseudogene1 2     Myosin, Heavy Polypeptide 51
MYH51 2     Sarcomeric Myosin1
Myosin, Heavy Chain 161     MHC202
Myosin, Heavy Polypeptide 161     MYH16P2

External Ids:    HGNC: 310381   Entrez Gene: 841762   Ensembl: ENSG000000020797   OMIM: 6085805   UniProtKB: Q9H6N64   

Export aliases for MYH16 gene to outside databases

Previous GC identifers: GC07U901194 GC07P098448 GC07P098516 GC07P098708 GC07P093506


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MYH16 Gene:
The MYH16 gene, encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is
inactivated in humans. Stedman et al. (2004) (PubMed 15042088) hypothesized that the decrement in masticatory
muscle size caused by the inactivation of MYH16 removed an evolutionary constraint on encephalization in early
man.(supplied by OMIM, Mar 2008)

GeneCards Summary for MYH16 Gene:
MYH16 (myosin, heavy chain 16 pseudogene) is a pseudogene.

summary for MYH16 Gene:
Myosins are a large family of motor proteins that share the common features of ATP hydrolysis, actin binding
and potential for kinetic energy transduction. Originally isolated from muscle cells (hence the name),
almost all eukaryotic cells are now known to contain myosins. Structurally, mysoins contain a head domain
that binds to actin filaments (microfilaments) and is the site of ATP hydrolysis. The tail domain interacts
with cargo molecules, and the neck acts as a linker between the head and tail and is the site of regulatory
myosin light chain binding. There are 17 myosin families and the most well characterized is myosin II.
Myosin II is found predominantly in myocytes and mediates plus-ended movement along microfilaments. It is
involved in muscle contraction through cyclic interactions with actin-rich thin filaments, creating a
contractile force. It is regulated by phosphorylation via myosin light chain kinase (MLCK) and by
intracellular Ca2+ concentrations.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000007.13  NC_018918.2  NT_007933.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the MYH16 gene promoter:
         MEF-2A   MyoD   aMEF-2   Nkx2-5   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MYH16

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MYH16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q22.1   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q22.1

MYH16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MYH16 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P098870:  view genomic region     (about GC identifiers)

Start:
98,836,417 bp from pter      End:
98,908,753 bp from pter
Size:
72,337 bases      Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 98,230,872-98,255,542     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/TrEMBL: Q9H6N6 (See protein sequence)
Recommended Name: cDNA: FLJ22037 fis, clone HEP08868  
Size: 746 amino acids; 86993 Da


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MYHII: Myosins / Myosin superfamily : Class II

3 InterPro protein domains:
 IPR027401 Myosin-like_IQ_dom
 IPR015650 Myosin_1/23/4/6/7/8/13/15
 IPR002928 Myosin_tail

Graphical View of Domain Structure for InterPro Entry Q9H6N6

ProtoNet protein and cluster: Q9H6N6

UniProtKB/TrEMBL: Q9H6N6
Similarity: Contains myosin head-like domain


Find genes that share domains with MYH16           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for MYH16

miRNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MYH16 About    
See pathways by source

SuperPathContained pathways About
1Immune response CCR3 signaling in eosinophils
Inhibitory action of Lipoxins on neutrophil migration0.51
Immune response CCR3 signaling in eosinophils0.51
2Cell adhesion Integrin mediated cell adhesion and migration
Cytoskeleton remodeling Regulation of actin cytoskeleton by Rho GTPases0.49
Development MAG dependent inhibition of neurite outgrowth0.46
Cell adhesion Integrin mediated cell adhesion and migration0.49
Cell adhesion Tight junctions0.33

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


Selected GeneGo (Thomson Reuters) Pathways for MYH16 (see all 6)
    Cell adhesion Integrin-mediated cell adhesion and migration
Cytoskeleton remodeling Regulation of actin cytoskeleton by Rho GTPases
Inhibitory action of Lipoxins on neutrophil migration
Immune response CCR3 signaling in eosinophils
Cell adhesion Tight junctions


    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MYH16
Interactions:

    Search GeneGlobe Interaction Network for MYH16

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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  Browse compounds at ApexBio 

Compounds for MYH16 available from Tocris Bioscience    About this table
CompoundAction CAS #
BTSSelective inhibitor of skeletal muscle myosin II ATPase activity[1576-37-0]
(R)-(+)-BlebbistatinSelective inhibitor of myosin II ATPase activity. Inactive enantiomer of (+-)-blebbistatin (Cat. No. 1760)[1177356-70-5]
(S)-(-)-BlebbistatinSelective inhibitor of myosin II ATPase activity. Active enantiomer of (+-)-blebbistatin (Cat. No. 1760)[856925-71-8]
(+-)-BlebbistatinSelective inhibitor of myosin II ATPase activity[674289-55-5]



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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Unigene Cluster for MYH16:

Myosin, heavy chain 16 pseudogene
Hs.621401
Unigene Representative Sequence: AK025690
8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000439784 ENST00000453194 ENST00000413734 ENST00000425880 ENST00000452010
ENST00000429079 ENST00000453378 ENST00000330888(uc003upw.3)
miRNA
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  QuantiFast Probe-based Assays in human, mouse, rat MYH16

Additional mRNA sequence: 

AK025690.1 NR_002147.2 

1 DOTS entry:

DT.97775306 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MYH16 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MYH16 Expression
About this image

MYH16 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.621401
    Custom PCR Arrays for MYH16
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MYH16

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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ENSEMBL Gene Tree for MYH16 (if available)
TreeFam Gene Tree for MYH16 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for MYH16 gene
14 SIMAP similar genes for MYH16 using alignment to 1 protein entry:     Q9H6N6_HUMAN:
MYH3    MYH7    MYH1    MYH13    MYH2    MYH4
MYH6    MYH8    MYH7B    MYH15    MYH11    MYH10
MYH14    MYH9

Find genes that share paralogs with MYH16           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MYH16 (see all 609)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 7 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1125416201,2
C,F--98868993(+) TGGGCG/ATGGTG 1 -- us2k11Minor allele frequency- A:0.50WA 2
rs1473852971,2
C--98869179(+) AAGTT-/CACACAC 1 -- us2k10--------
rs3710599231,2
C--98869180(+) CAAGT-/AC/CA 
        
ACACA
1 -- us2k10--------
rs1144686201,2
F--98869190(+) ACTGGG/TTGGCT 1 -- us2k11Minor allele frequency- T:0.01WA 118
rs734072781,2
C--98869224(+) ATTTTT/CTTACT 1 -- us2k13Minor allele frequency- C:0.17WA NA 240
rs1861343041,2
--98869263(+) TTTTAG/TGTGAT 1 -- us2k10--------
rs1174077291,2
F--98869351(+) GGGGTC/GTTGCT 1 -- us2k11Minor allele frequency- G:0.01NA 120
rs1421785501,2
--98869401(+) CACTGA/CAGCCT 1 -- us2k10--------
rs3755059291,2
C--98869490(+) GCTAA-/TTTTTT 1 -- us2k10--------
rs1462296971,2
--98869532(+) CTAGGC/GTCATT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MYH16 (98836417 - 98908753 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for MYH16:    About this table    
Variant IDTypeSubtypePubMed ID
esv2661738CNV Deletion23128226
nsv831068CNV Loss17160897

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MYH16
DNA2.0 Custom Variant and Variant Library Synthesis for MYH16

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 608580    OMIM disorders: --


Find genes that share disorders with MYH16           About GenesLikeMe


Export disorders for MYH16 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MYH16 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MYH16)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Evolution of sarcomeric myosin heavy chain genes: evidence from fish. (PubMed id 15014174)1, 3 McGuigan K....Postlethwait J.H. (Mol. Biol. Evol. 2004)
  2. Evolutionary implications of three novel members of the human sarcomeric myosin heavy chain gene family. (PubMed id 11919279)1, 3 Desjardins P.R....Stedman H.H. (Mol. Biol. Evol. 2002)
  3. Comparative analyses reveal a complex history of molecular evolution for human MYH16. (PubMed id 15470226)1, 9 Perry G.H....Stone A.C. (Mol. Biol. Evol. 2005)
  4. Comparative genomics search for losses of long-established genes on the human lineage. (PubMed id 18085818)1 Zhu J....Haussler D. (PLoS Comput. Biol. 2007)
  5. Myosin gene mutation correlates with anatomical changes in the human lineage. (PubMed id 15042088)1 Stedman H.H....Mitchell M.A. (Nature 2004)
  6. Muscle-specific integrins in masseter muscle fibers of chimpanzees: an immunohistochemical study. (PubMed id 20430719)9 Favaloro A....Anastasi G. (Folia Histochem. Cytobiol. 2009)
  7. Ghosts of the past I: some muscles and fasciae in the head domain. (PubMed id 18703876)9 Oxnard C.E. and Franklin D. ( international journal of primatology 2008)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 84176 HGNC: 31038 Ensembl:ENSG00000002079 euGenes: HUgn84176 ECgene: MYH16
H-InvDB: MYH16

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MYH16 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for MYH16 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MYH16 gene:
Search GeneIP for patents involving MYH16

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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