MYCN Gene
protein-coding GIFtS: 63
GC02P016032
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v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (Previous names: v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: NMYC)
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Aliases & Descriptions for MYCN
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
|---|
| MODED 2, 5 | | N-myc 1, 2 | | NMYC 2, 3, 5 | | ODED 2, 5 | | bHLHe37 1, 2 | | pp65/67 2 |
| | | Descriptions |
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| N-myc proto-oncogene protein 2 | | neuroblastoma MYC oncogene 2 | neuroblastoma-derived v-myc avian myelocytomatosis viral related oncogene 2 | | oncogene NMYC 2 | v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived 1, 2 | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived 2 | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 2 |
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| | Search outside databases for aliases for MYCN genePrevious GC identifers: GC02P016084 GC02P016102 |
Summaries for MYCN(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for MYCN: This gene is a member of the MYC family and encodes a protein with a basic helix-loop-helix (bHLH) domain. This protein is located in the nucleus and must dimerize with another bHLH protein in order to bind DNA. Amplification of this gene is associated with a variety of tumors, most notably neuroblastomas. [provided by RefSeq] UniProtKB/Swiss-Prot: MYCN_HUMAN, P04198Function: May function as a transcription factorGene Wiki entry for MYCN (N-Myc) |
Genomic Location for MYCN
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the MYCN gene 
Entrez Gene cytogenetic band: 2p24.1 Ensembl cytogenetic band: 2p24.3 HGNC cytogenetic band: 2p24.3MYCN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P016032:
(about GC identifiers)
Start:
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15,998,134 bp from pter |
End:
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16,004,580 bp from pter |
Size:
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6,447 bases |
Orientation:
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plus strand |
RefSeq DNA sequence:- NC_000002.10 NT_005334.15
| Proteins for MYCN
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MYCN_HUMAN, P04198 (See
protein sequence)Recommended Name: N-myc proto-oncogene protein Size: 464 amino acids; 49561 Da
Subunit: Efficient DNA binding requires dimerization with another bHLH protein. Binds DNA as an heterodimer with MAX. Interacts with KDM5A, KDM5B and HUWE1
Subcellular location: Nucleus
Developmental stage: Expressed during fetal development
Secondary accessions: Q6LDT9Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005369.2
ENSEMBL proteins: ENSP00000281043 ENSP00000379356
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: MYCN 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for MYCN: Assays for MYCN: | Protein
Domains/ Families for MYCN(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P04198
ProtoNet protein and cluster: P04198 2 Blocks protein families: IPB001092 Basic helix-loop-helix dimerization domain bHLH IPB002418 Myc proto-oncogene signature
UniProtKB/Swiss-Prot: MYCN_HUMAN, P04198Similarity: Contains 1 basic helix-loop-helix (bHLH) domain | Gene Function for MYCN
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005378
Applied Biosystems Silencer® siRNAs for MYCN
Sigma-Aldrich siRNA for MYCN  Sigma-Aldrich shRNA for MYCN  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005378                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005378                                  untagged cDNA clone in CMV expression vector: NM_005378 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005378
UniProtKB/Swiss-Prot: MYCN_HUMAN, P04198Function: May function as a transcription factorGenatlas biochemistry entry for MYCN:avian myelocytomatosis viral (v-myc) oncogene homolog,neuroblastoma derived,amplified in retinoblastoma,neuroblastoma,small cell carcinoma of the lung,with poor prognosis15/20 MGI mutant phenotypes (inferred from 10 alleles ) (MGI details for Mycn) (see all 20
):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for MYCN
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for MYCN (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for MYCN 
5/84 Interacting proteins for MYCN (ENSP000002810433 P041982) via UniProtKB, MINT, and/or STRING (see all 84
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
TAS | 3796607 | About this table
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Drugs & Compounds for MYCN(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Browse Tocris compounds for MYCN 10/15 Novoseek chemical compound relationships for MYCN gene (see all 15
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| ornithine |
38.10 |
8 |
8761302 (2), 8622876 (2), 11306486 (1), 11433525 (1) (see all 5) |
| vanillylmandelic acid |
29.52 |
2 |
2196987 (1) |
| catecholamine |
29.04 |
7 |
2262866 (1), 1727993 (1), 9815553 (1), 8843955 (1) |
| dbc-amp |
23.05 |
1 |
1701347 (1) |
| leucine |
17.94 |
3 |
1935896 (1), 8455937 (1), 18006809 (1) |
| homovanillic acid |
14.46 |
3 |
2196987 (1), 8195324 (1) |
| oligonucleotide |
14.29 |
6 |
14567977 (1), 1821655 (1), 10088728 (1), 12670915 (1) (see all 5) |
| glyceraldehyde 3-phosphate |
11.53 |
1 |
17306077 (1) |
| phosphorothioate |
8.35 |
3 |
17015904 (1), 10381259 (1) |
| tyrosine |
4.25 |
9 |
15631895 (2), 8385567 (1), 9559292 (1), 12880971 (1) (see all 7) |
About this table
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Transcripts for MYCN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005378
Sigma-Aldrich siRNA for MYCN  Sigma-Aldrich shRNA for MYCN  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005378 REFSEQ mRNAs for MYCN gene: NM_005378.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005378               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005378                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005378                                  untagged cDNA clone in CMV expression vector: NM_005378  Additional cDNA sequence: AF320053.1 AK298225.1 AK299495.1 BC002712.2 BT007384.1 CR599077.1 CR614612.1 CR624442.1 9 DOTS entries: DT.442342 DT.97803950 DT.99962970 DT.121006873 DT.86841661 DT.100841340 DT.121006874 DT.91943526 DT.95296594 24/186 AceView cDNA sequences (see all 186
):AI094294 BQ070922 AW246671 BM461586 BQ069056 AA620376 BM925834 AW055194 CR599077 AI360395 AI492424 AI498972 AA960798 BU687918 BT007384 BQ069271 BQ882758 BX460336 AF320053 AI433544 AW594483 BF592778 BU175980 AI962624
highest scoring ESTs for MYCN:AA094353 AA101681 AA548970 AA620376 AA778008 AA936627 AA960798 AI003077 AI039218 AI049927 Unigene Cluster for MYCN: V-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) Hs.25960 [show with all ESTs]Unigene Representative Sequence: NM_005378
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000281043
ENST00000396041
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Expression for MYCN
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| MYCN expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for MYCN
1 / 2 / 3 10 probe-sets matching MYCN gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTATGAAAA
SOURCE GeneReport for Unigene cluster: Hs.25960
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Orthologs for MYCN
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for MYCN gene from 5/9 species (see all 9
)
About this table Species with no ortholog for MYCN
ENSEMBL Gene Tree for MYCN | Paralogs for MYCN(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for MYCN gene
- MYCL22 MYC2 MYCL12
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SNPs/Variants for MYCN(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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The following additional 26 SNP(s) have been
found in Applied Biosystems data source: (Click
for
Applied Biosystems TaqMan ® Genotyping Assay)
HapMap Linkage Disequilibrium images for MYCN (up to first 250kb)
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Disorders & Mutations for MYCN
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 164840 disorders: 164280 602585 UniProtKB/Swiss-Prot: MYCN_HUMAN, P04198
Amplification of the N-MYC gene is associated with a variety of human tumors, most frequently neuroblastoma, where the level of amplification appears to increase as the tumor progresses Defects in MYCN are the cause of Feingold syndrome [MIM:164280]; also known as oculodigitoesophagoduodenal syndrome (ODED). Feingold syndrome is characterized by variable combinations of esophageal and duodenal atresias, microcephaly, learning disability and limb malformations. Cardiac and renal malformations, vertebral anomalies, and deafness have also been described Defects in MYCN are the cause of microcephaly and digital abnormalities with normal intelligence [MIM:602585]10/70 Novoseek disease relationships for MYCN gene (see all 70
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neuroblastoma metastatic |
79.10 |
4 |
16116152 (2), 12819037 (1), 2066755 (1) |
| stage neuroblastoma |
74.59 |
4 |
1458508 (1), 19171715 (1), 2172598 (1) |
| neuroepithelioma |
69.14 |
3 |
1377938 (1), 2147226 (1), 12962147 (1) |
| tumors |
68.40 |
390 |
7674334 (8), 2196987 (5), 2066755 (5), 11107123 (4) (see all 99) |
| ganglioneuroblastoma |
67.09 |
2 |
8454274 (2) |
| retinoblastoma |
66.74 |
36 |
18538370 (6), 12232763 (3), 8343223 (2), 1865909 (2) (see all 20) |
| cerebral primitive neuroectodermal tumor |
66.24 |
1 |
7889335 (1) |
| medulloblastoma |
64.80 |
15 |
2048223 (3), 18286303 (2), 16156230 (2), 15198123 (2) (see all 10) |
| rhabdomyosarcoma alveolar |
62.02 |
3 |
12880971 (1), 9872655 (1), 2323837 (1) |
| primitive neuroectodermal tumor pnet |
58.88 |
1 |
7889335 (1) |
About this table
Human Gene Mutation Database: MYCN Genetic Association Database: MYCN Tumor Gene Database: MYCN
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Medical News for MYCN(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for MYCN (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/488 PubMed articles for MYCN gene (see all 488
):- Specific phosphorylation of the acidic central region of the N-myc protein by casein kinase II. (PubMed id 1425701)1, 3, 4 Hagiwara T....Taya Y. (1992)
- The HECT-domain ubiquitin ligase Huwe1 controls neural differentiation and proliferation by destabilizing the N-Myc oncoprotein. (PubMed id 18488021)3, 4 Zhao X....Lasorella A. (2008)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Sequence of a germ-line N-myc gene and amplification as a mechanism of activation. (PubMed id 2834684)3, 4 Ibson J.M. and Rabbitts P.H. (1988)
- Alternative processing of RNA transcribed from NMYC. (PubMed id 3437890)3, 4 Stanton L.W. and Bishop J.M. (1987)
- Identification and characterization of the protein encoded by the human N-myc oncogene. (PubMed id 3008339)3, 4 Slamon D.J....Souza L.M. (1986)
- Nucleotide sequence of the human N-myc gene. (PubMed id 2869488)3, 4 Stanton L.W.... Bishop J.M. (1986)
- Human N-myc is closely related in organization and nucleotide sequence to c-myc. (PubMed id 3510398)3, 4 Kohl N.E....Alt F.W. (1986)
- Nucleotide sequence of the 3' exon of the human N-myc gene. (PubMed id 2987858)3, 4 Michitsch R.W. and Melera P.W. (1985)
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Search for MYCN
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing MYCN
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing MYCN
(According to HUGE)
About This Section
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Specialized Databases showing MYCN(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
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| Services for MYCN(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for MYCN:

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| Antibodies & Assays for MYCN  |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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