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Aliases for MYCBP2-AS1 Gene

Subcategory (RNA class) for MYCBP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYCBP2-AS1 Gene

  • MYCBP2 Antisense RNA 1 2 3 5
  • MYCBP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYCBP2-AS1 Gene

Previous GeneCards Identifiers for MYCBP2-AS1 Gene

  • GC00U933125
  • GC13P077650

Summaries for MYCBP2-AS1 Gene

GeneCards Summary for MYCBP2-AS1 Gene

MYCBP2-AS1 (MYCBP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYCBP2-AS1 Gene

Genomics for MYCBP2-AS1 Gene

Regulatory Elements for MYCBP2-AS1 Gene

Enhancers for MYCBP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F077047 0.6 Ensembl ENCODE 11.5 +21.8 21801 2.1 ZNF680 MYCBP2-AS1 CLN5 ENSG00000274898 MYCBP2-AS2
GH13F077025 1 ENCODE 5.9 +0.1 74 3.5 HDGF PKNOX1 ARID4B SIN3A FEZF1 YY1 GLIS2 ELK1 ZNF207 KLF7 FBXL3 MYCBP2-AS2 CLN5 MYCBP2-AS1
GH13F077328 1.1 ENCODE 4.9 +302.9 302946 2.9 PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 MYCBP2-AS1 CLN5 MYCBP2 LOC105370271
GH13F077297 0.8 Ensembl ENCODE 4.9 +272.8 272834 4.4 ZNF316 BHLHE40 FOS MAFK SPI1 MYCBP2 CLN5 MYCBP2-AS1 GC13P077273
GH13F077313 0.5 Ensembl 7 +287.5 287534 1.0 RAD51 CBX5 ZNF7 MYCBP2-AS1 CLN5 MYCBP2 GC13P077273
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MYCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MYCBP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000517950 -467 3401 HDGF PKNOX1 ARID4B SIN3A FEZF1 YY1 GLIS2 ZNF207 KLF7 KLF13

Genomic Location for MYCBP2-AS1 Gene

Chromosome:
13
Start:
77,026,767 bp from pter
End:
77,129,717 bp from pter
Size:
102,951 bases
Orientation:
Plus strand

Genomic View for MYCBP2-AS1 Gene

Genes around MYCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYCBP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYCBP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYCBP2-AS1 Gene

Proteins for MYCBP2-AS1 Gene

Post-translational modifications for MYCBP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYCBP2-AS1 Gene

Domains & Families for MYCBP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYCBP2-AS1 Gene

Function for MYCBP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYCBP2-AS1 Gene

Localization for MYCBP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MYCBP2-AS1 Gene

Pathways & Interactions for MYCBP2-AS1 Gene

SuperPathways for MYCBP2-AS1 Gene

No Data Available

Interacting Proteins for MYCBP2-AS1 Gene

Gene Ontology (GO) - Biological Process for MYCBP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYCBP2-AS1 Gene

Transcripts for MYCBP2-AS1 Gene

mRNA/cDNA for MYCBP2-AS1 Gene

(1) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYCBP2-AS1 Gene

MYCBP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MYCBP2-AS1 Gene

No ASD Table

Relevant External Links for MYCBP2-AS1 Gene

GeneLoc Exon Structure for
MYCBP2-AS1
ECgene alternative splicing isoforms for
MYCBP2-AS1

Expression for MYCBP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MYCBP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for MYCBP2-AS1 Gene:

Hs.569288
genes like me logo Genes that share expression patterns with MYCBP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MYCBP2-AS1 Gene

Orthologs for MYCBP2-AS1 Gene

Evolution for MYCBP2-AS1 Gene

ENSEMBL:
Gene Tree for MYCBP2-AS1 (if available)
TreeFam:
Gene Tree for MYCBP2-AS1 (if available)

No data available for Orthologs for MYCBP2-AS1 Gene

Paralogs for MYCBP2-AS1 Gene

No data available for Paralogs for MYCBP2-AS1 Gene

Variants for MYCBP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYCBP2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111247542 -- 77,078,839(+) CTGCA(C/T)AAATC intron-variant, reference, synonymous-codon
rs111774023 -- 77,087,755(+) TAATT(-/A)AAAAA intron-variant, nc-transcript-variant
rs111969133 -- 77,083,174(+) TTCAC(A/G)TACTC intron-variant, reference, missense
rs112364456 -- 77,081,772(+) AACTT(A/C)CAGTT intron-variant
rs112493272 -- 77,076,515(+) ATTAC(A/G)AATGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MYCBP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759951 CNV loss 17122850
nsv832653 CNV loss 17160897

Relevant External Links for MYCBP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYCBP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYCBP2-AS1 Gene

Disorders for MYCBP2-AS1 Gene

Relevant External Links for MYCBP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYCBP2-AS1

No disorders were found for MYCBP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYCBP2-AS1 Gene

Publications for MYCBP2-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for MYCBP2-AS1 Gene

Sources for MYCBP2-AS1 Gene

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