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Aliases for MYCBP2-AS1 Gene

Subcategory (RNA class) for MYCBP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MYCBP2-AS1 Gene

  • MYCBP2 Antisense RNA 1 2 3 5
  • MYCBP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MYCBP2-AS1 Gene

Previous GeneCards Identifiers for MYCBP2-AS1 Gene

  • GC00U933125
  • GC13P077650

Summaries for MYCBP2-AS1 Gene

GeneCards Summary for MYCBP2-AS1 Gene

MYCBP2-AS1 (MYCBP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MYCBP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MYCBP2-AS1 Gene

Genomics for MYCBP2-AS1 Gene

Regulatory Elements for MYCBP2-AS1 Gene

Enhancers for MYCBP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H077047 0.7 Ensembl ENCODE 11.5 +21.7 21662 1 ZNF680 ATF2 EZH2 MYCBP2-AS1 CLN5 ENSG00000274898 MYCBP2-AS2
GH13H077328 1.6 Ensembl ENCODE dbSUPER 4.9 +302.9 302946 2 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 MYCBP2-AS1 CLN5 MYCBP2 LOC105370271
GH13H077025 1 ENCODE 5.9 +0.1 74 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 GLIS2 FBXL3 MYCBP2-AS2 CLN5 MYCBP2-AS1
GH13H077297 0.9 Ensembl ENCODE dbSUPER 4.9 +271.6 271576 1 IKZF2 SPI1 MYCBP2 CLN5 MYCBP2-AS1 GC13P077273
GH13H077049 0.2 Ensembl 11.5 +22.9 22934 0 MYCBP2-AS1 ENSG00000274898 MYCBP2-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MYCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MYCBP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000064006 33 2401 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 GLIS2

Genomic Location for MYCBP2-AS1 Gene

Chromosome:
13
Start:
77,026,767 bp from pter
End:
77,129,717 bp from pter
Size:
102,951 bases
Orientation:
Plus strand

Genomic View for MYCBP2-AS1 Gene

Genes around MYCBP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MYCBP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MYCBP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MYCBP2-AS1 Gene

Proteins for MYCBP2-AS1 Gene

Post-translational modifications for MYCBP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MYCBP2-AS1 Gene

Domains & Families for MYCBP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MYCBP2-AS1 Gene

Function for MYCBP2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MYCBP2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MYCBP2-AS1 Gene

Localization for MYCBP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MYCBP2-AS1 Gene

Pathways & Interactions for MYCBP2-AS1 Gene

SuperPathways for MYCBP2-AS1 Gene

No Data Available

Interacting Proteins for MYCBP2-AS1 Gene

Gene Ontology (GO) - Biological Process for MYCBP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MYCBP2-AS1 Gene

Drugs & Compounds for MYCBP2-AS1 Gene

No Compound Related Data Available

Transcripts for MYCBP2-AS1 Gene

mRNA/cDNA for MYCBP2-AS1 Gene

(1) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MYCBP2-AS1 Gene

MYCBP2 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MYCBP2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MYCBP2-AS1 Gene

No ASD Table

Relevant External Links for MYCBP2-AS1 Gene

GeneLoc Exon Structure for
MYCBP2-AS1
ECgene alternative splicing isoforms for
MYCBP2-AS1

Expression for MYCBP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MYCBP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for MYCBP2-AS1 Gene:

Hs.569288
genes like me logo Genes that share expression patterns with MYCBP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MYCBP2-AS1 Gene

Orthologs for MYCBP2-AS1 Gene

Evolution for MYCBP2-AS1 Gene

ENSEMBL:
Gene Tree for MYCBP2-AS1 (if available)
TreeFam:
Gene Tree for MYCBP2-AS1 (if available)

No data available for Orthologs for MYCBP2-AS1 Gene

Paralogs for MYCBP2-AS1 Gene

No data available for Paralogs for MYCBP2-AS1 Gene

Variants for MYCBP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for MYCBP2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000179072 -- 77,074,360(+) TAACA(C/T)TTCTA intron-variant, upstream-variant-2KB
rs1000443632 -- 77,079,001(+) TATGG(A/T)CCTTC intron-variant
rs1000456937 -- 77,081,397(+) AGCTA(A/G)AGAGC intron-variant
rs1000622555 -- 77,077,783(+) TTTTT(G/T)GTGCA intron-variant
rs1000916342 -- 77,085,209(+) CTCAT(C/T)TGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MYCBP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759951 CNV loss 17122850
nsv832653 CNV loss 17160897

Relevant External Links for MYCBP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MYCBP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MYCBP2-AS1 Gene

Disorders for MYCBP2-AS1 Gene

Relevant External Links for MYCBP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MYCBP2-AS1

No disorders were found for MYCBP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MYCBP2-AS1 Gene

Publications for MYCBP2-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 60

Products for MYCBP2-AS1 Gene

Sources for MYCBP2-AS1 Gene

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