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Aliases for MXRA5 Gene

Aliases for MXRA5 Gene

  • Matrix-Remodelling Associated 5 2 3
  • Adlican 2 3 4
  • Adhesion Protein With Leucine-Rich Repeats And Immunoglobulin Domains Related To Perlecan 3 4
  • Matrix-Remodeling-Associated Protein 5 3

External Ids for MXRA5 Gene

Previous GeneCards Identifiers for MXRA5 Gene

  • GC00U990747
  • GC0XM003220
  • GC0XM001169

Summaries for MXRA5 Gene

Entrez Gene Summary for MXRA5 Gene

  • This gene encodes one of the matrix-remodelling associated proteins. This protein contains 7 leucine-rich repeats and 12 immunoglobulin-like C2-type domains related to perlecan. This gene has a pseudogene on chromosome Y. [provided by RefSeq, Mar 2010]

GeneCards Summary for MXRA5 Gene

MXRA5 (Matrix-Remodelling Associated 5) is a Protein Coding gene. Diseases associated with MXRA5 include lung cancer. An important paralog of this gene is IGSF10.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MXRA5 Gene

Genomics for MXRA5 Gene

Genomic Location for MXRA5 Gene

Start:
3,308,565 bp from pter
End:
3,347,092 bp from pter
Size:
38,528 bases
Orientation:
Minus strand

Genomic View for MXRA5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MXRA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MXRA5 Gene

No data available for Regulatory Elements for MXRA5 Gene

Proteins for MXRA5 Gene

  • Protein details for MXRA5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NR99-MXRA5_HUMAN
    Recommended name:
    Matrix-remodeling-associated protein 5
    Protein Accession:
    Q9NR99
    Secondary Accessions:
    • Q6P1M7
    • Q9Y3Y8

    Protein attributes for MXRA5 Gene

    Size:
    2828 amino acids
    Molecular mass:
    312150 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH11846.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH64986.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH80586.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for MXRA5 Gene

Proteomics data for MXRA5 Gene at MOPED

Post-translational modifications for MXRA5 Gene

  • Glycosylation at Asn287, Asn321, Asn633, Ser1046, Ser1047, Ser1049, Thr1050, Thr1332, Asn1403, Ser1583, Asn1735, Ser1844, Asn2007, Asn2056, and Asn2693
  • Modification sites at PhosphoSitePlus

Other Protein References for MXRA5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MXRA5 Gene

Domains for MXRA5 Gene

Gene Families for MXRA5 Gene

HGNC:
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing
  • ISET :Immunoglobulin superfamily / I-set domain containing

Suggested Antigen Peptide Sequences for MXRA5 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NR99

UniProtKB/Swiss-Prot:

MXRA5_HUMAN :
  • Q9NR99
Domain:
  • Contains 12 Ig-like C2-type (immunoglobulin-like) domains.
  • Contains 1 LRRCT domain.
  • Contains 1 LRRNT domain.
Similarity:
  • Contains 7 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with MXRA5: view

Function for MXRA5 Gene

Gene Ontology (GO) - Molecular Function for MXRA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with MXRA5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MXRA5 Gene

Localization for MXRA5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MXRA5 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MXRA5 Gene COMPARTMENTS Subcellular localization image for MXRA5 gene
Compartment Confidence
extracellular 3
plasma membrane 3
cytosol 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for MXRA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with MXRA5: view

Pathways for MXRA5 Gene

SuperPathways for MXRA5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MXRA5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with MXRA5: view

No data available for Pathways by source for MXRA5 Gene

Transcripts for MXRA5 Gene

mRNA/cDNA for MXRA5 Gene

Unigene Clusters for MXRA5 Gene

Matrix-remodelling associated 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MXRA5 Gene

No ASD Table

Relevant External Links for MXRA5 Gene

GeneLoc Exon Structure for
MXRA5
ECgene alternative splicing isoforms for
MXRA5

Expression for MXRA5 Gene

mRNA expression in normal human tissues for MXRA5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MXRA5 Gene

SOURCE GeneReport for Unigene cluster for MXRA5 Gene Hs.369422

genes like me logo Genes that share expressions with MXRA5: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MXRA5 Gene

Orthologs for MXRA5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MXRA5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
OneToMany
-- 36
  • 92 (a)
OneToMany
LOC473896 35
  • 95.45 (n)
  • 91.47 (a)
cow
(Bos Taurus)
Mammalia MXRA5 35
  • 74.28 (n)
  • 69.59 (a)
MXRA5 36
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MXRA5 35
  • 78.71 (n)
  • 75.6 (a)
MXRA5 36
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MXRA5 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MXRA5 36
  • 50 (a)
OneToOne
chicken
(Gallus gallus)
Aves MXRA5 35
  • 61.25 (n)
  • 56.61 (a)
MXRA5 36
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MXRA5 36
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii LOC100151112 35
  • 55.8 (n)
  • 50.86 (a)
MXRA5 (3 of 3) 36
  • 35 (a)
OneToMany
mxra5a 36
  • 39 (a)
OneToMany
mxra5b 36
  • 39 (a)
OneToMany
Species with no ortholog for MXRA5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MXRA5 Gene

ENSEMBL:
Gene Tree for MXRA5 (if available)
TreeFam:
Gene Tree for MXRA5 (if available)

Paralogs for MXRA5 Gene

Paralogs for MXRA5 Gene

Selected SIMAP similar genes for MXRA5 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for MXRA5 Gene

genes like me logo Genes that share paralogs with MXRA5: view

Variants for MXRA5 Gene

Sequence variations from dbSNP and Humsavar for MXRA5 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs739951 -- 3,347,102(+) GTGCA(A/G)GCAGG upstream-variant-2KB
rs757446 -- 3,327,721(+) cagaa(A/G)ctcca intron-variant
rs806627 -- 3,332,308(+) TGGCC(C/G)ATCTC intron-variant
rs809864 -- 3,344,529(+) CAATA(A/C)ACAGG intron-variant
rs929307 -- 3,343,093(+) AATGA(A/C)ACCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MXRA5 Gene

Variant ID Type Subtype PubMed ID
esv33979 CNV Gain+Loss 17666407
esv1014244 CNV Insertion 17803354
esv2665216 CNV Deletion 23128226

Relevant External Links for MXRA5 Gene

HapMap Linkage Disequilibrium report
MXRA5
Human Gene Mutation Database (HGMD)
MXRA5
Locus Specific Mutation Databases (LSDB)
MXRA5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MXRA5 Gene

Disorders for MXRA5 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for MXRA5 Gene including...

Search for MXRA5 Gene in MalaCards »

UniProtKB/Swiss-Prot

MXRA5_HUMAN
  • Lung cancer (LNCR) [MIM:211980]: A common malignancy affecting tissues of the lung. The most common form of lung cancer is non-small cell lung cancer (NSCLC) that can be divided into 3 major histologic subtypes: squamous cell carcinoma, adenocarcinoma, and large cell lung cancer. NSCLC is often diagnosed at an advanced stage and has a poor prognosis. {ECO:0000269 PubMed:22696596}. Note=The disease may be caused by mutations affecting the gene represented in this entry.
genes like me logo Genes that share disorders with MXRA5: view

Publications for MXRA5 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Cloning of differentially expressed genes in skin fibroblasts from centenarians. (PMID: 15609104) Chondrogianni N. … Gonos E.S. (Biogerontology 2004) 3 4
  3. Exome sequencing identifies MXRA5 as a novel cancer gene frequently mutated in non-small cell lung carcinoma from Chinese patients. (PMID: 22696596) Xiong D. … You M. (Carcinogenesis 2012) 3 4
  4. Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon. (PMID: 12101425) Zou T.T. … Meltzer S.J. (Oncogene 2002) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for MXRA5 Gene

Sources for MXRA5 Gene

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