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MUC7 Gene

protein-coding   GIFtS: 56

GC04P071372
mucin 7, secreted
(Previous names: mucin 7, salivary )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases &
Descriptions
for MUC7

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section
Aliases
Apo-MG2 3
DKFZp686J03256 2
FLJ27047 1, 2
MG2 1, 2, 3
MGC34772 2
MUC-7 3
Descriptions
Salivary mucin-7 3
mucin 7, salivary 1, 2
mucin 7, secreted 2
External Ids
HGNC: 75181
Entrez Gene: 45892
UniProtKB: Q8TAX73
Ensembl: ENSG000001711957
Search outside databases for aliases for MUC7 gene

Previous GC identifers: GC04U990038 GC04P071587 GC04P071653 GC04P071518

Summaries
for MUC7

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

 EntrezGene summary for MUC7:
This gene encodes a small salivary mucin, which is thought to play a role in facilitating the
clearance of bacteria in the oral cavity and to aid in mastication, speech, and swallowing. The
central domain of this glycoprotein contains tandem repeats, each composed of 23 amino acids. The
most common allele contains 6 repeats, and some alleles may be associated with susceptibility to
asthma. Alternatively spliced transcript variants with different 5' UTR, but encoding the
same protein, have been found for this gene.

UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7
Function: May function in a protective capacity by promoting the clearance of bacteria in the oral
cavity and aiding in mastication, speech, and swallowing. Binds P.aeruginosa pili

Gene Wiki entry for MUC7

Genomic Location
for MUC7

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

 Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13-q21   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

MUC7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P071372:     (about GC identifiers)

Start:
 71,372,525 bp from pter
End:
 71,383,303 bp from pter
Size:
 10,779 bases
Orientation:
 plus strand
RefSeq DNA sequence:
NC_000004.10  NT_077444.3  

Proteins
for MUC7

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

 UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7 (See protein sequence)
Recommended Name: Mucin-7 precursor  
Size: 377 amino acids; 39171 Da
Subunit: Monomer
Subcellular location: Secreted
Secondary accessions: Q9UCD7 Q9UCD8

Post-translational modifications:

  • N- and O-glycosylated. Contains fucose, mannose, galactose, N-acetylglucosamine and
    N-acetylgalactosamine1


    • REFSEQ proteins (3 alternative transcripts): 
    NP_001138478.1  NP_001138479.1  NP_689504.2  


    ENSEMBL proteins: 
    ENSP00000302021 


    Human Recombinant Proteins 
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (MUC7)
    Human Recombinant Proteins from Abnova (MUC7)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005737 cytoplasm IDA18029348
    GO:0005886 plasma membrane IDA18029348
    About this table

    Antibodies for MUC7: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for MUC7
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (MUC7), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (MUC7)
    Novus Biologicals Antibodies for MUC7

    Assays for MUC7: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    Protein Domains/
    Families
    for MUC7

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q8TAX7

    Gene Function
    for MUC7

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (MUC7)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MUC7)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_152291

                  Applied Biosystems Silencer® siRNAs for MUC7

                  Sigma-Aldrich siRNA for MUC7  
                         Sigma-Aldrich shRNA for MUC7  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for MUC7
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001145006
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001145006
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001145006 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001145007

    UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7
    Function: May function in a protective capacity by promoting the clearance of bacteria in the oral
    cavity and aiding in mastication, speech, and swallowing. Binds P.aeruginosa pili

    Genatlas biochemistry entry for MUC7:
    mucin 7,salivary,expressed only in bladder cancer during the malignant transformation of bladder
    urothelium

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI16203048
    About this table

    Pathways & Interactions
    for MUC7

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  MUC7 


    5/19 Interacting proteins for MUC7 (ENSP000003020213 Q8TAX71) via UniProtKB, MINT, and/or STRING (see all 19 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HTN1P155151STRING (score=.737) EBI-738582, EBI-738638
    AMY1AP047451EBI-738582, EBI-738586
    HTN3P155161EBI-738582, EBI-738783
    PRH1P028101EBI-738582, EBI-738601
    STATHP028081EBI-738582, EBI-738687
    About this table

    Drugs & Compounds
    for MUC7

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for MUC7
    3 Novoseek chemical compound relationships for MUC7 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    proline 10.41 4 9881747 (3)
    leucine 5.18 3 11021659 (2), 11241221 (1)
    threonine 4.15 1 10532235 (1)
    About this table


    Transcripts
    for MUC7

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (MUC7)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MUC7)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_152291

                  Sigma-Aldrich siRNA for MUC7  
                         Sigma-Aldrich shRNA for MUC7  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_152291  

    REFSEQ mRNAs for MUC7 gene (3 alternative transcripts): 

    NM_001145006.1   NM_001145007.1   NM_152291.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_152291  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001145006
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001145006
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001145006 

    Additional cDNA sequence: 

    AK093828.1 AK312855.1 BC025688.1 BX537739.1 BX647190.1 BX648903.1 BX648904.1 L13283.1 

    21 DOTS entries:

    DT.101987506  DT.92014457  DT.40120482  DT.101987511  DT.121249392  DT.100735123  DT.121249485  DT.121249312 
    DT.101966218  DT.121249359  DT.121249414  DT.121249429  DT.121249516  DT.121249295  DT.121249389  DT.121249473 
    DT.121249293  DT.121249301  DT.121249430  DT.121249532  DT.121249562 

    24/160 AceView cDNA sequences (see all 160 ):

    BX486980 BX486968 BP333948 BP334119 BP334505 AI203550 NM_152291 BP335067 
    BP334874 BP333703 BX487313 BP333743 BX487563 BP335107 BP335114 BX487203 
    BC025688 BX487368 BP334938 BP335118 BX486966 BP335008 BP333997 BP334625 

    highest scoring ESTs for MUC7:

    L13283 AI203550 BC025688 BI770366 BX114385 BX486946 BX486963 BX486966 BX486968 BX486973 

    Unigene Cluster for MUC7:

    Mucin 7, secreted
    Hs.631946  [show with all ESTs]
    Unigene Representative Sequence: NM_001145006


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for MUC7

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c
    SP1:              -                                             
    SP2:                                                            
    SP3:                                                            
    SP4:                                -     -                     
    SP5:                          -                                 

    About this scheme

    ECgene alternative splicing isoforms for MUC7

    1 Ensembl transcript including schematic representation:
    ENST00000304887  

    Expression
    for MUC7

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    MUC7 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for MUC7

    1 / 2 / 3

    4 probe-sets matching MUC7 gene


    		Affymetrix
    probe-set    		 Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    		31706_at2, 3 U95-A 1 1.00 1.00 0.17 0.11 L13283 1.00 1.00 1.00 1
    91138_at*2, 3 U95-D 1 0.56 1.00 1.00 1.00 R12580 0.20 0.50 0.38 1

    		217059_at2, 3 U133-A 1 1.00 1.00 -- -- L13283 1.00 1.00 1.00 1

    		217059_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  MUC7 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGAAATGTAT

    SOURCE GeneReport for Unigene cluster: Hs.631946

    Expression variation in blood from EXPOLDB for MUC7

    UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7
    Tissue specificity: Expressed in salivary gland tissues and only in those that contain mucous
    acinar cells (e.g. sublingual and submandibular glands) and not in salivary glands containing only
    serous acinar cells (e.g. parotid gland)

    Orthologs
    for MUC7

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section
    Orthologs for MUC7 gene from 2 species
    Organism Gene Locus Description Human
    Similarity    		 NCBI accessions
    chimpanzee
    (Pan troglodytes)    		 MUC71   -- mucin 7, secreted 98.96(n)
    98.02(a)    		 742062  XM_001160534.1  XP_001160534.1 
    cow
    (Bos taurus)    		 MUC71   -- mucin 7, secreted 61.54(n)
    44.23(a)    		 788646  XM_001255642.1  XP_001255643.1 
    About this table        Species with no ortholog for MUC7

    ENSEMBL Gene Tree for MUC7

    Paralogs
    for MUC7

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for MUC7 gene
    C11orf242  

    SNPs/Variants
    for MUC7

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section

    		UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7
    Polymorphism: The most common allele, MUC7*6, contains a tandem repeat domain comprising 6 repeats
    (shown here) each composed of 23 amino acids. These repeats are very similar but not identical. In
    a large cohort of 375 individuals from a variety of ethnic backgrounds, three different alleles
    were detected, MUC7*6 being the most common, in all populations studied, followed by MUC7*5 (5
    repeats), with frequency varying from 0.05 in Africans to 0.22 in East Asians. MUC7*8 (8 repeats),
    a novel rare allele, was identified in 1 Northern European individual


    10/110 NCBI SNPs in MUC7 are shown (see all 110 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 70)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg    		TypeMoreRecsAllele
    freq    		PopTotal
    sample    		More
    ------------
    rs21306511,2
    		A,C,F,H,O71370884(-) AAAAAT/ATGTCT 1 -- ng514Minor allele frequency- A:0.18EU NA 258
    rs46940671,2
    		A,C,F,H71371756(+) TAATAT/CTGTTA 1 -- ng51 tfbs34Minor allele frequency- C:0.24EU EA WA 408
    rs76547041,2
    		A,C,F,H71370860(+) CATTAG/TTTAGG 1 -- ng5111Minor allele frequency- T:0.10EU EA WA NA 982
    rs76622641,2
    		A,C,F,H71372365(+) GTCAAT/CCTCAG 1 -- ng519Minor allele frequency- C:0.19NA MN EA EU WA 906
    rs44525061,2
    		C,F,H71371674(+) tcctgG/CTAGGA 1 -- ng518Minor allele frequency- C:0.17EU EA WA 836
    rs46295241,2
    		C,F,H71371636(+) acataA/Gcaagt 1 -- ng519Minor allele frequency- G:0.18EU EA MN WA 1066
    rs76958351,2
    		A,F,H71370735(+) AATGCA/GTAAGT 1 -- ng514Minor allele frequency- G:0.02EU EA WA 412
    rs76961711,2
    		A,H71370909(+) TTTTGA/TGGTCA 1 -- ng514Minor allele frequency- T:0.00EU EA WA 420
    rs76965591,2
    		F,H71371097(+) AATTAA/GTATTA 1 -- ng514Minor allele frequency- G:0.02EU EA WA 418
    --
    rs76956481,2
    		A,C71370619(+) gtgacA/Gggttg 1 -- ng51 tfbs30--------
    About this table

    HapMap Linkage Disequilibrium images for MUC7 (up to first 250kb)

    Disorders & Mutations
    for MUC7

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    		 OMIM: 158375   disorders: 600807  

    UniProtKB/Swiss-Prot: MUC7_HUMAN, Q8TAX7

  • MUC7 alleles are associated with susceptibility to asthma [MIM:600807]. The MUC7*5 allele
    is rarer in the atopic asthmatics than in the atopic non-asthmatics. Comparison of all atopic
    individuals with all nonatopic shows no difference, while comparison of all asthmatic individuals
    with all non-asthmatic shows that the asthmatic group has reduced MUC7*5 frequency. The
    significantly lower frequency of the MUC7*5 allele in individuals with atopic asthma was explained
    by the possible association between alleles and different interactions with bacteria, since the
    glycosylated domain is thought to be responsible, at least in part, for the bacterial binding that
    allows bacteria to be cleared from the epithelial surfaces

    • 6 Novoseek disease relationships for MUC7 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    bladder cancer 42.28 5 15036676 (3), 9865718 (1), 12478110 (1)
    bladder tumors 39.02 2 9865718 (1), 12478110 (1)
    metastasis 9.72 1 15036676 (1)
    carcinoma 5.01 2 12478110 (1), 16426915 (1)
    cancer 0.00 4 9829729 (2), 15897748 (1)
    tumors 0.00 9 15036676 (2), 15897748 (1), 16770570 (1), 18696039 (1) (see all 5)
    About this table

    Human Gene Mutation Database: MUC7
    Genetic Association Database: MUC7
    Human Genome Epidemiology Navigator: MUC7 (6 documents)

    Medical News
    for MUC7

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    		   --

    Publications
    for MUC7

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    		10/93 PubMed articles for MUC7 gene (see all 93 ):

    Search for MUC7

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing MUC7

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section
    Entrez Gene: 4589 HGNC: 7518 AceView: MUC7 Ensembl:ENSG00000171195 euGenes: HUgn4589
    ECgene: MUC7 H-InvDB: MUC7

    Other Databases showing MUC7

    (According to HUGE)
    About This Section

    		   --

    Specialized Databases showing MUC7

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    Mucin databasehttp://www.medkem.gu.se/mucinbiology/databases/

    Licensable Technologies
    for MUC7

    (Available from WIS Yeda, Salk, Tufts)
    About This Section

    		  --

    Services
    for MUC7

    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for MUC7:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
    		  Free SNP selection tool



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     Antibodies for MUC7

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