Aliases for MUC6 Gene
Aliases for MUC6 Gene
External Ids for MUC6 Gene
- HGNC: 7517
- Entrez Gene: 4588
- Ensembl: ENSG00000184956
- OMIM: 158374
- UniProtKB: Q6W4X9
Previous GeneCards Identifiers for MUC6 Gene
- GC11U990090
- GC11P000176
- GC11M001008
- GC11M000974
- GC11M000828
Summaries for MUC6 Gene
-
This gene encodes a member of the mucin protein family. Mucins are high molecular weight glycoproteins produced by many epithelial tissues. The protein encoded by this gene is secreted and forms an insoluble mucous barrier that protects the gut lumen. [provided by RefSeq, Dec 2016]
GeneCards Summary for MUC6 Gene
MUC6 (Mucin 6, Oligomeric Mucus/Gel-Forming) is a Protein Coding gene. Diseases associated with MUC6 include Pancreatic Ductal Carcinoma and Small Intestine Cancer. Among its related pathways are Metabolism of proteins and CLEC7A (Dectin-1) signaling. Gene Ontology (GO) annotations related to this gene include extracellular matrix structural constituent. An important paralog of this gene is MUC5B.
UniProtKB/Swiss-Prot for MUC6 Gene
-
May provide a mechanism for modulation of the composition of the protective mucus layer related to acid secretion or the presence of bacteria and noxious agents in the lumen. Plays an important role in the cytoprotection of epithelial surfaces and are used as tumor markers in a variety of cancers. May play a role in epithelial organogenesis.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MUC6 Gene
Genomics for MUC6 Gene
GeneHancer (GH) Regulatory Elements for MUC6 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH11I001036 | Promoter | 0.5 | EPDnew | 550.8 | 0.0 | -31 | 0.1 | MUC6 LOC101927503 | ||
GH11I001039 | Enhancer | 1 | FANTOM5 ENCODE dbSUPER | 35.9 | -3.4 | -3385 | 1.6 | MAZ ZSCAN4 MAX CEBPB MNT GLI4 ZNF184 POLR2A MYNN KDM1A | LOC101927503 MUC6 AP2A2 CD151 GC11P001047 | |
GH11I001043 | Enhancer | 0.5 | FANTOM5 | 44.6 | -7.0 | -7040 | 0.2 | MITF L3MBTL2 MAX MNT MGA | MUC6 AP2A2 GC11P001047 LOC101927503 |
Regulatory Element Products
Genomic Locations for MUC6 Gene
- chr11:1,012,821-1,036,706
- (GRCh38/hg38)
- Size:
- 23,886 bases
- Orientation:
- Minus strand
- chr11:1,012,821-1,036,706
- (GRCh37/hg19)
Genomic View for MUC6 Gene
- Cytogenetic band:
-
- 11p15.5 by Ensembl
- 11p15.5 by Entrez Gene
- 11p15.5 by HGNC


RefSeq DNA sequence for MUC6 Gene
Proteins for MUC6 Gene
-
Protein details for MUC6 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6W4X9-MUC6_HUMAN
- Recommended name:
- Mucin-6
- Protein Accession:
- Q6W4X9
- O15329
- Q14394
- Q2TUQ5
- Q4L207
- Q8N8I1
- Q8NAK1
Protein attributes for MUC6 Gene
- Size:
- 2439 amino acids
- Molecular mass:
- 257051 Da
- Quaternary structure:
-
- Multimer; disulfide-linked.
- SequenceCaution:
-
- Sequence=AK092533; Type=Erroneous termination; Positions=2357; Note=Translated as Glu.; Evidence={ECO:0000305}; Sequence=BAC04860.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Protein Expression for MUC6 Gene
Post-translational modifications for MUC6 Gene
- O-glycosylated.
- Glycosylation at isoforms=268, isoforms=486, isoforms=659, Asn975, Asn1179, and isoforms=2366
Other Protein References for MUC6 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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No data available for DME Specific Peptides for MUC6 Gene
Domains & Families for MUC6 Gene
Gene Families for MUC6 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Predicted secreted proteins
Protein Domains for MUC6 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for MUC6 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for MUC6 Gene
Function for MUC6 Gene
Molecular function for MUC6 Gene
- GENATLAS Biochemistry:
- mucin 6,gastric,belonging to the secreted mucins cluster,aberrantly expressed in colorectal neoplasia
- UniProtKB/Swiss-Prot Function:
- May provide a mechanism for modulation of the composition of the protective mucus layer related to acid secretion or the presence of bacteria and noxious agents in the lumen. Plays an important role in the cytoprotection of epithelial surfaces and are used as tumor markers in a variety of cancers. May play a role in epithelial organogenesis.
- UniProtKB/Swiss-Prot Induction:
- Up-regulated by NFKB1. Repressed by mithramycin A which is an inhibitor of binding of transcription factors.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005201 | extracellular matrix structural constituent | NAS | 7680650 |
Animal Model Products
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miRNA for MUC6 Gene
- miRTarBase miRNAs that target MUC6
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-
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- Mammalian expression: PiggyBac
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- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available MUC6 gene related products
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Cell Line Products
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No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MUC6 Gene
Localization for MUC6 Gene
Subcellular locations from UniProtKB/Swiss-Prot for MUC6 Gene
- Secreted.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005576 | extracellular region | IEA | -- |
GO:0005796 | Golgi lumen | TAS | -- |
GO:0005886 | plasma membrane | TAS | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for MUC6 Gene
Pathways & Interactions for MUC6 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Defective C1GALT1C1 causes Tn polyagglutination syndrome (TNPS) |
.62
|
|
2 | Diseases of glycosylation | ||
3 | Innate Immune System |
.61
|
|
4 | Metabolism of proteins | ||
5 | O-linked glycosylation |
Pathways by source for MUC6 Gene
1 BioSystems pathway for MUC6 Gene
Interacting Proteins for MUC6 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0002223 | stimulatory C-type lectin receptor signaling pathway | TAS | -- |
GO:0016266 | O-glycan processing | TAS | -- |
GO:0030277 | maintenance of gastrointestinal epithelium | IEA,NAS | 7680650 |
No data available for SIGNOR curated interactions for MUC6 Gene
Transcripts for MUC6 Gene
mRNA/cDNA for MUC6 Gene
- (1) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (83) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for MUC6 Gene
CRISPR Products
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Clone Products
- VectorBuilder custom plasmid, inducible vectors for MUC6
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- genomics-online: cdna clones - Search results for available MUC6 gene related products
- orf clones - Search results for available MUC6 gene related products
- Applied Biological Materials Clones for MUC6
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b |
---|---|---|---|---|---|---|---|---|---|---|---|
SP1: | - | ||||||||||
SP2: | - |
Expression for MUC6 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- NULL (Uncategorized)
-
Stomach (Gastrointestinal Tract)
mRNA differential expression in normal tissues according to GTEx for MUC6 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MUC6 Gene
NURSA nuclear receptor signaling pathways regulating expression of MUC6 Gene:
MUC6SOURCE GeneReport for Unigene cluster for MUC6 Gene:
Hs.528432mRNA Expression by UniProt/SwissProt for MUC6 Gene:
Q6W4X9-MUC6_HUMANEvidence on tissue expression from TISSUES for MUC6 Gene
- Stomach(4.8)
- Intestine(3.2)
- Gall bladder(2.8)
- Pancreas(2.5)
- Lung(2.2)
Primer Products
-
OriGene qPCR primer pairs for MUC6
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No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MUC6 Gene
Orthologs for MUC6 Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | MUC6 33 |
|
||
dog (Canis familiaris) |
Mammalia | LOC100856444 33 |
|
||
-- 34 |
|
OneToMany | |||
-- 34 |
|
OneToMany | |||
mouse (Mus musculus) |
Mammalia | Muc6 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Muc6 33 |
|
||
platypus (Ornithorhynchus anatinus) |
Mammalia | MUC6 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | MUC6 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | MUC6 34 |
|
OneToOne | |
lizard (Anolis carolinensis) |
Reptilia | MUC6 34 |
|
OneToOne | |
sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToOne |
- Species where no ortholog for MUC6 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for MUC6 Gene
Variants for MUC6 Gene
Polymorphic Variants from UniProtKB/Swiss-Prot for MUC6 Gene
- MUC6_HUMAN-Q6W4X9
- The number of repeats is highly polymorphic and varies among different alleles. These repeats are very similar but not identical.
SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs148581741 | uncertain-significance, Malignant tumor of prostate | 1,018,419(-) | G/A/T | coding_sequence_variant, missense_variant | |
rs111749447 | benign, not specified | 1,018,168(-) | TCGT/T | coding_sequence_variant, inframe_deletion | |
rs113508205 | not-provided, not provided | 1,016,890(-) | G/A | coding_sequence_variant, missense_variant | |
rs587777897 | not-provided, not provided | 1,018,224(-) | T/A | coding_sequence_variant, missense_variant | |
rs1000002702 | -- | 1,031,379(-) | C/T | intron_variant |
Additional Variant Information for MUC6 Gene
Disorders for MUC6 Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
pancreatic ductal carcinoma |
|
|
small intestine cancer |
|
|
signet ring cell adenocarcinoma |
|
|
cystadenoma |
|
|
pseudomyxoma peritonei |
|
|
Additional Disease Information for MUC6
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for MUC6 Gene
Publications for MUC6 Gene
- Upregulation of MUC6 mucin gene expression by NFkappaB and Sp factors. (PMID: 15979574) Sakai H … Yuasa Y (Biochemical and biophysical research communications 2005) 3 4 22 58
- The complete genomic organization of the human MUC6 and MUC2 mucin genes. (PMID: 15081123) Rousseau K … Toribara NW (Genomics 2004) 3 4 22 58
- Aberrant epithelial expression of trefoil family factor 2 and mucin 6 in Helicobacter pylori infected gastric antrum, incisura, and body and its association with antralisation. (PMID: 15280409) Xia HH … Wong BC (Journal of clinical pathology 2004) 3 4 22 58
- Gastric MUC5AC and MUC6 are large oligomeric mucins that differ in size, glycosylation and tissue distribution. (PMID: 11988092) Nordman H … Carlstedt I (The Biochemical journal 2002) 3 4 22 58
- The carboxyl-terminal sequence of the human secretory mucin, MUC6. Analysis Of the primary amino acid sequence. (PMID: 9195947) Toribara NW … Kim YS (The Journal of biological chemistry 1997) 3 4 22 58
Products for MUC6 Gene
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 38 available MUC6 Antibodies ranked by validation data
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Sources for MUC6 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
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- (63) Novus Biologicals
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- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
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- (90) BioGPS
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- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
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