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MUC3B Gene

protein-coding   GIFtS: 34
GCID: GC07Pg99966          (predicted)

Mucin 3B, Cell Surface Associated

(Previous name: mucin 3B)
  See MUC3B-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Mucin 3B, Cell Surface Associated1 2     MUC32
Intestinal Mucin-3B2 3     MUC3A2
MUC-3B2 3     Intestinal Mucin MUC3B2
Mucin 3B1     mucin-3B2

External Ids:    HGNC: 133841   Entrez Gene: 578762   OMIM: 6056335   UniProtKB: Q9H1953   

Export aliases for MUC3B gene to outside databases

Previous GC identifers: GC07P099084 GC07P100147 GC07P100160 GC07P100158 GC07P100191 GC07P100332 GC07P100547 GC07U903146 GC07Pg99965


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MUC3B Gene:
MUC3B (mucin 3B, cell surface associated) is a protein-coding gene. Diseases associated with MUC3B include ulcerative colitis, and cystic fibrosis.

UniProtKB/Swiss-Prot: MUC3B_HUMAN, Q9H195
Function: Major glycoprotein component of a variety of mucus gels. Thought to provide a protective, lubricating
barrier against particles and infectious agents at mucosal surfaces (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MUC3B
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MUC3B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MUC3B


Genomic Location:
Chromosome:7   

Entrez Gene cytogenetic band: 7q22   HGNC cytogenetic band: 7q22

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07Pg99966:       (about GC identifiers)

Start:
99,964,572 bp from start of contig CRA_TCAGchr7v2      End:
99,969,297 bp from start of contig CRA_TCAGchr7v2
Size:
4,726 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: MUC3B_HUMAN, Q9H195 (See protein sequence)
Recommended Name: Mucin-3B precursor  
Size: 1237 amino acids; 131402 Da
Secondary accessions: Q6W762 Q7LDU5 Q9GZZ2 Q9UN95

Explore the universe of human proteins at neXtProt for MUC3B: NX_Q9H195

Explore proteomics data for MUC3B at MOPED

Post-translational modifications: 

  • Highly O-glycosylated and probably also N-glycosylated (By similarity)1
  • Modification sites at neXtProt

  • See MUC3B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    Reactome Protein details: Q9H195

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    MUC: Mucins

    3 InterPro protein domains:
     IPR000742 EG-like_dom
     IPR000082 SEA_dom
     IPR013032 EGF-like_CS

    Graphical View of Domain Structure for InterPro Entry Q9H195

    ProtoNet protein and cluster: Q9H195

    1 Blocks protein domain: IPB000082 SEA domain

    UniProtKB/Swiss-Prot: MUC3B_HUMAN, Q9H195
    Similarity: Contains 1 EGF-like domain
    Similarity: Contains 1 SEA domain


    Find genes that share domains with MUC3B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MUC3B_HUMAN, Q9H195
    Function: Major glycoprotein component of a variety of mucus gels. Thought to provide a protective, lubricating
    barrier against particles and infectious agents at mucosal surfaces (By similarity)

    Animal Models:

       genOway: Develop your customized and physiologically relevant rodent model for MUC3B

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    MUC3B_HUMAN, Q9H195: Membrane; Single-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    cytosol1
    lysosome1
    nucleus1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005796Golgi lumen TAS--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with MUC3B           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for MUC3B About    
    See pathways by source

    SuperPathContained pathways About
    1O-linked glycosylation of mucins
    O-linked glycosylation of mucins0.47
    Termination of O-glycan biosynthesis0.38
    2Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
    Post-translational protein modification0.43
    Metabolism of proteins0.30


    Find genes that share SuperPaths with MUC3B           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    2 Reactome Pathways for MUC3B
        O-linked glycosylation of mucins
    Termination of O-glycan biosynthesis


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    Interactions:

        Search GeneGlobe Interaction Network for MUC3B

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016266O-glycan processing TAS--
    GO:0043687post-translational protein modification TAS--
    GO:0044267cellular protein metabolic process TAS--

    Find genes that share ontologies with MUC3B           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for MUC3B

    3 Novoseek inferred chemical compound relationships for MUC3B gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    threonine 55.7 1 7864366 (1)
    oligonucleotide 8.49 1 2254452 (1)
    tyrosine 3.06 1 11289722 (1)



    Find genes that share compounds with MUC3B           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    miRNA
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    3 AceView cDNA sequences:

    BI005786 BF844624 AY307931 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MUC3B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    MUC3B Expression
    About this image

    MUC3B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MUC3B Protein Expression

    UniProtKB/Swiss-Prot: MUC3B_HUMAN, Q9H195
    Tissue specificity: Fetal and adult small intestine and fetal and adult colon

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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      --

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for MUC3B gene
    3 SIMAP similar genes for MUC3B using alignment to 3 protein entries:     MUC3B_HUMAN (see all proteins):
    MUC3A    MUC12    NOTCH2

    Find genes that share paralogs with MUC3B           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    2 SNPs for MUC3B    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0295084
    ----see VAR_0295082 H Y mis40--------
    VAR_0295074
    ----see VAR_0295072 A V mis40--------

    HapMap Linkage Disequilibrium report for MUC3B (99964572 - 99969297 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for MUC3B: --
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing MUC3B
    DNA2.0 Custom Variant and Variant Library Synthesis for MUC3B

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 605633    OMIM disorders: --

    3 diseases for MUC3B:    
    About MalaCards
    ulcerative colitis    cystic fibrosis    colon cancer


    Find genes that share disorders with MUC3B           About GenesLikeMe

    4 Novoseek inferred disease relationships for MUC3B gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    barrett esophagus 50.4 8 16803684 (8)
    colon cancer 49.7 4 8110187 (2), 12198708 (1), 1728605 (1)
    cystic fibrosis 13.2 2 2254452 (1), 8500875 (1)
    adenocarcinoma 12.5 1 1550588 (1)


    Export disorders for MUC3B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MUC3B gene, integrated from 10 sources (see all 39):
    (articles sorted by number of sources associating them with MUC3B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Multiple transcripts of MUC3: evidence for two genes, MUC3A and MUC3B. (PubMed id 10973822)1, 2, 3, 9 Pratt W.S....Swallow D.M. (Biochem. Biophys. Res. Commun. 2000)
    2. Initiation of transcription of the MUC3A human intestinal mucin from a TATA-less promoter and comparison with the MUC3B amino terminus. (PubMed id 12958310)1, 2, 9 Gum J.R. Jr.... Kim Y.S. (J. Biol. Chem. 2003)
    3. Associations of distinct variants of the intestinal mucin gene MUC3A with ulcerative colitis and Crohn's disease. (PubMed id 11289722)1, 2, 9 Kyo K.... Nakamura Y. (J. Hum. Genet. 2001)
    4. The MUC3 gene encodes a transmembrane mucin and is alternatively spliced. (PubMed id 10405327)1, 2 Williams S.J.... McGuckin M.A. (Biochem. Biophys. Res. Commun. 1999)
    5. MUC3 human intestinal mucin. Analysis of gene structure, the carboxyl terminus, and a novel upstream repetitive region. (PubMed id 9334251)1, 2 Gum J.R. Jr.... Kim Y.S. (J. Biol. Chem. 1997)
    6. Expression of mucin 3 and mucin 5AC in arthritic synovial tissue. (PubMed id 18163520)1 Volin M.V....Koch A.E. (Arthritis Rheum. 2008)
    7. The DNA sequence of human chromosome 7. (PubMed id 12853948)1 Hillier L.W.... Wilson R.K. (Nature 2003)
    8. Genomic organization and structure of the 3' region of human MUC3: alternative splicing predicts membrane-bound and soluble forms of the mucin. (PubMed id 10512748)1 Crawley S.C.... Kim Y.S. (Biochem. Biophys. Res. Commun. 1999)
    9. Molecular cloning of cDNAs derived from a novel human intestinal mucin gene. (PubMed id 2393399)1 Gum J.R. Jr.... Kim Y.S. (Biochem. Biophys. Res. Commun. 1990)
    10. Prevalence of and risk factors for Barrett's esophagus with intestinal predominant mucin phenotype. (PubMed id 16803684)9 Amano Y....Kinoshita Y. (Scand. J. Gastroenterol. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 57876 HGNC: 13384 AceView: MUC3B.1 euGenes: HUgn57876 ECgene: MUC3B
    H-InvDB: MUC3B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MUC3B Pharmacogenomics, SNPs, Pathways
    Mucin databasehttp://www.medkem.gu.se/mucinbiology/databases/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MUC3B gene:
    Search GeneIP for patents involving MUC3B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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