MUC17 Gene
protein-coding GIFtS: 52
GCID: GC07P100663
|
|
mucin 17, cell surface associated
| |
Aliases
for MUC17 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Mucin 17, Cell Surface Associated1 2 | | Mucin-171 | | Small Intestinal Mucin-32 3 | | Secreted Mucin MUC172 | | MUC-172 3 | | Small Intestinal Mucin MUC32 | | MUC-32 3 | | EC 3.1.38 | | MUC32 3 | | EC 6.3.2.88 | | Membrane Mucin MUC172 | | |
Export aliases for MUC17 gene to outside databasesPrevious GC identifers: GC07P099168 GC07P100231 GC07P100235 GC07P100276 GC07P100450 GC07P100022 |
Summaries
for MUC17 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for MUC17:
Membrane mucins, such as MUC17, function in epithelial cells to provide cytoprotection, maintain luminal structure,provide signal transduction, and confer antiadhesive properties upon cancer cells that lose their apical/basalpolarization.(supplied by OMIM, Apr 2004)
UniProtKB/Swiss-Prot: MUC17_HUMAN, Q685J3Function: Probably plays a role in maintaining homeostasis on mucosal surfaces
Gene Wiki entry for MUC17
|
Genomic Views
for MUC17 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MUC17 gene promoter:
NRSF form 1 NF-kappaB NRSF form 2 NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MUC17
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MUC17 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q22.1 Ensembl cytogenetic band: 7q22.1 HGNC cytogenetic band: 7q22MUC17 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P100663: view genomic region
(about GC identifiers)
Start:
|
100,663,353 bp from pter |
End:
|
100,702,140 bp from pter |
Size:
|
38,788 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 100,021,753-100,060,529 |
|
Proteins
for MUC17 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: MUC17_HUMAN, Q685J3 (See
protein sequence)Recommended Name: Mucin-17 precursor Size: 4493 amino acids; 451741 Da
Subunit: Interacts via its C-terminus with PDZK1 and this interaction appears important for proper localization
Subcellular location: Isoform 1: Cell membrane; Single-pass membrane protein
Subcellular location: Isoform 2: Secreted (Probable). Cell membrane
Secondary accessions: O14761 Q685J2 Q8TDH7Alternative splicing: 2 isoforms: Q685J3-1 Q685J3-2 Explore the universe of human proteins at neXtProt for MUC17: NX_Q685J3
Post-translational modifications:
Probably cleaved within the SEA domain1
N-glycosylated. Contains high mannose and complex-type glycans. The forms containing the complex type glycans localizeto the cell surface. Not O-glycosylated1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q685J3
2 DME Specific Peptides for MUC17 (Q685J3)
MUC17 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001035194.1
ENSEMBL proteins: ENSP00000302716 ENSP00000368751 Reactome Protein details: Q685J3
Human Recombinant Protein Products:
Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table
MUC17 for ontologies About GeneDecksing
MUC17 Antibody Products:
Assay Products for MUC17: |
Protein
Domains /
Families
for MUC17 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
MUC17 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q685J3ProtoNet protein and cluster: Q685J3 1 Blocks protein family: IPB000082 SEA domain
UniProtKB/Swiss-Prot: MUC17_HUMAN, Q685J3Similarity: Contains 1 EGF-like domainSimilarity: Contains 1 SEA domain |
Function
for MUC17 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: MUC17_HUMAN, Q685J3Function: Probably plays a role in maintaining homeostasis on mucosal surfacesEnzyme Numbers (IUBMB): EC 3.1.32 EC 6.3.2.82
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MUC17
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MUC17 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
MUC17 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for MUC17:
|
Pathways & Interactions
for MUC17 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Addition of GalNAc to the Tn antigen via an alpha-1,6 linkage forms a Core 7 glycoprotein | | | 2 | Asparagine N-linked glycosylation | |
Pathway sources
See GeneCards unified pathways
Show all pathways
5/8 
Reactome Pathways for MUC17 (see all 8)
MUC17 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MUC17
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/44 Interacting proteins for MUC17 (ENSP000003027164) via UniProtKB, MINT, STRING, and/or I2D (see all 44)About this table
Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0010812 | negative regulation of cell-substrate adhesion |
IEA | -- | | GO:0016266 | O-glycan processing |
TAS | -- | | GO:0019725 | cellular homeostasis |
TAS | 17990980 | | GO:0022408 | negative regulation of cell-cell adhesion |
IEA | -- | | GO:0043687 | post-translational protein modification |
TAS | -- |
MUC17 for ontologies About GeneDecksing
|
Drugs & Compounds
for MUC17 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
MUC17 for compounds About GeneDecksing
 Browse Tocris compounds for MUC17
1 Novoseek chemical compound relationship for MUC17 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| serine |
21.2 |
1 |
11855812 (1) |
Search CenterWatch for drugs/clinical trials and news about MUC17
|
Transcripts
for MUC17 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for MUC17 gene (2 alternative transcripts): NM_001040105.1 NM_001004430.1 Unigene Cluster for MUC17: Mucin 17, cell surface associated Hs.271819 [show with all ESTs]Unigene Representative Sequence: NM_0010401054 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000306151(uc003uxp.1) ENST00000379439(uc010lho.1) ENST00000470303
ENST00000497859
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MUC17
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MUC17
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: MUC17 (NM_001040105) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MUC17 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MUC17 |
Additional cDNA sequence: AF016692.1 AF016693.1 AF016694.1 AF430017.1 AJ606307.1 AK026404.1 BC126315.1 5 DOTS entries: DT.95357674 DT.91743183 DT.92417971 DT.435208 DT.100777667 24/50 AceView cDNA sequences (see all 50): BM819089 BM830704 BM830721 BM769819 BM823632 BM825521 BM987743 BM843401 NM_001004430 BM769898 BM823207 BM768498 BM830760 AI700389 BM823649 BM831173 AJ606307 BM823637 AJ606308 BM831185 BM769398 BM773519 BM826759 BM823592
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for MUC17 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | - | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for MUC17
|
Expression
for MUC17 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| MUC17 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAAAACACCT
About this image
See MUC17 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MUC17
SOURCE GeneReport for Unigene cluster: Hs.271819
UniProtKB/Swiss-Prot: MUC17_HUMAN, Q685J3Tissue specificity: Expressed almost exclusively in the intestine. Expression is especially high in both the duodenumand transverse colon. Expressed in mature absorptive cells of the small intestinal villi. No expression is detected ingoblet cells. Highly expressed in pancreatic adenocarcinoma tissue (at protein level). Expression is not detectable innormal pancreas, in pancreatitis or in cell lines derived from other cancers
SABiosciences Custom PCR Arrays for MUC17
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MUC17
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MUC17 |
Orthologs
for MUC17 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals and fungi.
Orthologs for MUC17 gene from 2/9 species (see all 9) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
zebrafish
(Danio rerio) |
Actinopterygii |
BX085193.16 |
-- |
15(a) |
1 ↔ 1 |
2(47682925-47685999) |
baker's yeast
(Saccharomyces cerevisiae) |
Saccharomycetes |
MUC11 |
Muc1p |
43.11(n)
34.62(a) |
|
854836 NP_012284.3 |
ENSEMBL Gene Tree for MUC17 (if available)
TreeFam Gene Tree for MUC17 (if available) |
Paralogs
for MUC17 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MUC17 gene
- LOC1001315142 MUC162 MUC3A2 MUC122 MUC222
2 SIMAP similar genes for MUC17 using alignment to 3 protein entries: MUC17_HUMAN (see all proteins):MUC3 MUC12
MUC17 for paralogs About GeneDecksing
|
Genomic Variants
for MUC17 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for MUC17 (100663353 - 100702140 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 9 variations for MUC17
9 CNVs: 6562 31382 94756 3692 82119 6563 70016 36584 82117 | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for MUC17 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
MUC17 for disorders About GeneDecksing
OMIM gene information: 608424
OMIM disorders: --
13  diseases for MUC17: About MalaCardsbile reflux biliary papillomatosis pancreatic ductal adenocarcinoma intrahepatic cholangiocarcinoma
cholangiocarcinoma colon cancer adenocarcinoma laryngitis
breast cancer pancreatitis pneumonia cholesterol
carcinoma
7 Novoseek disease relationships for MUC17 gene About this table
Export disorders for MUC17 gene to outside databases
|
Publications
for MUC17 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for MUC17 gene, integrated from 9 sources (see all 34):
(articles sorted by number of sources associating them with MUC17) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- MUC17, a novel membrane-tethered mucin. (PubMed id 11855812)1, 2, 3, 9 Gum J.R. Jr.... Kim Y.S. (2002)
- The C-terminus of the transmembrane mucin MUC17 binds to the scaffold protein PDZK1 that stably localizes it to the enterocyte apical membrane in the small intestine. (PubMed id 17990980)1, 2 Malmberg E.K.... Hansson G.C. (2008)
- Characterization of human mucin MUC17. Complete coding sequence and organization. (PubMed id 16737958)1, 2 Moniaux N.... Batra S.K. (2006)
- N-glycosylation is required for the surface localization of MUC17 mucin. (PubMed id 12888891)1, 2 Ho J.J.L.... Kim Y.S. (2003)
- Molecular cloning of human MUC3 cDNA reveals a novel 59 amino acid tandem repeat region. (PubMed id 9299468)1, 2 Van Klinken B.J.-W.... Einerhand A.W. (1997)
- Human intestinal MUC17 mucin augments intestinal cell restitution and enhances healing of experimental colitis. (PubMed id 20211273)1, 9 Luu Y....Ho S.B. (2010)
- DNA methylation and histone H3-K9 modifications contr ibute to MUC17 expression. (PubMed id 20926598)1 Kitamoto S....Yonezawa S. (2011)
- Muc17 protects intestinal epithelial cells from enter oinvasive E. coli infection by promoting epithelial barrier integrity. (PubMed id 21393431)1 Resta-Lenert S....Ho S.B. (2011)
- Two atypical enteropathogenic Escherichia coli strain s induce the production of secreted and membrane-bound mucins to benefit their own growth at the apical surface of human mucin-secreting intestinal HT29-MTX c ells. (PubMed id 20065027)1 Vieira M.A....LiAcvin-Le Moal V. (2010)
- Expression of intestinal MUC17 membrane-bound mucin i n inflammatory and neoplastic diseases of the colon. (PubMed id 20702471)1 Senapati S....Batra S.K. (2010)
|
External Searches for MUC17 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing MUC17 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing MUC17 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MUC17 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for MUC17 gene:
Search GeneIP for patents involving MUC17
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for MUC17 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MUC17 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MUC17 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MUC17 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MUC17 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MUC17 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MUC17 |
| |
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| |  |  |  |  | | | | |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MUC17 |
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| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MUC17 |
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