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MUC16 Gene

protein-coding   GIFtS: 51

GC19M008904
mucin 16, cell surface associated
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CA-125 3
CA125 1, 2, 3
FLJ14303 1, 2
MUC-16 3
Descriptions
CA125 ovarian cancer antigen 2
Ovarian cancer-related tumor marker CA125 3
Ovarian carcinoma antigen CA125 3
mucin 16 2
mucin 16, cell surface associated 2
External Ids
HGNC: 155821
Entrez Gene: 940252
UniProtKB: Q8WXI73
Ensembl: ENSG000001811437
Search outside databases for aliases for MUC16 gene

Previous GC identifers: GC19M009087 GC19M009182 GC19M008805 GC19M008820 GC19U900441

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7
Function: Thought to provide a protective, lubricating barrier against particles and infectious
agents at mucosal surfaces (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.2   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13.2

MUC16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M008904:     (about GC identifiers)

Start:
8,820,520 bp from pter
End:
8,953,018 bp from pter
Size:
132,499 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000019.8  NT_011295.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7 (See protein sequence)
Recommended Name: Mucin-16  
Size: 22152 amino acids; 2353428 Da
Subunit: Binds to MSLN. Binding to MSLN mediates heterotypic cell adhesion. This may contribute to
the metastasis of ovarian cancer to the peritoneum by initiating cell attachment to the
mesothelial epithelium via binding to MSLN
Subcellular location: Cell membrane; Single-pass type I membrane protein. Secreted, extracellular
space. Note=May be liberated into the extracellular space following the phosphorylation of the
intracellular C-terminus which induces the proteolytic cleavage and liberation of the
extracellular domain
Miscellaneous: Antigen that is the basis for a widely used serum assay for the monitoring of
patients with ovarian epithelial cancer. Due to lack of sensitivity for stage I disease and lack
of specificity, it is of little value in the detection of early ovarian cancer. Due to its
similarly elevated levels in some nonmalignant conditions, it is not specific enough to be used
for population screening
Secondary accessions: Q6ZQW5 Q96RK2

Post-translational modifications:

  • Heavily O-glycosylated; expresses both type 1 and type 2 core glycans1
  • Heavily N-glycosylated; expresses primarily high mannose and complex bisecting type N-linked
    glycans1
  • May be phosphorylated. Phosphorylation of the intracellular C-terminal domain may induce
    proteolytic cleavage and the liberation of the extracellular domain into the extracellular space1
  • May contain numerous disulfide bridges. Association of several molecules of the secreted form may
    occur through interchain disulfide bridges providing an extraordinarily large gel-like matrix in
    the extracellular space or in the lumen of secretory ducts1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_078966.2  

    ENSEMBL proteins: 
    ENSP00000370342 ENSP00000381008 ENSP00000333016 ENSP00000370328 


    Human Recombinant Proteins 
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (MUC16)
    Human Recombinant Proteins from Abnova (MUC16)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    4 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005886 plasma membrane IEA--
    GO:0016021 integral to membrane IEA--
    GO:0019898 extrinsic to membrane IDA12766047
    About this table

    Antibodies for MUC16: 
    Invitrogen Antibodies for MUC16
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
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    Antibodies from Abcam (MUC16), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (MUC16)
    Novus Biologicals Antibodies for MUC16

    Assays for MUC16: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR000082 SEA


       GeneDecks  MUC16 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q8WXI7

    ProtoNet protein and cluster: Q8WXI7

    1 Blocks protein family: IPB000082 SEA domain

    UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7
    Domain: Composed of three domains, a Ser-, Thr-rich N-terminal domain, a repeated domain containing
    more than 60 partially conserved tandem repeats of 156 amino acids each (AAs 12061-21862) and a
    C-terminal transmembrane contain domain with a short cytoplasmic tail
    Similarity: Contains 2 ANK repeats
    Similarity: Contains 14 LRR (leucine-rich) repeats
    Similarity: Contains 56 SEA domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Browse Invitrogen for RNAi
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_024690

                  Applied Biosystems Silencer® siRNAs for MUC16

                  Sigma-Aldrich siRNA for MUC16  
                         Browse shRNA at Sigma-Aldrich  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_024690Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_024690

    UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7
    Function: Thought to provide a protective, lubricating barrier against particles and infectious
    agents at mucosal surfaces (By similarity)
    Induction: Up-regulated in ovarian cancer cells

    1 MGI mutant phenotype (inferred from 1 allele(MGI details for Muc16):

    reproductive system

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI14676194
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  MUC16 


    4 Interacting proteins for MUC16 (ENSP000003330163) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MSLNENSP000003723133STRING (score=.878)
    MUC13ENSP000003122353STRING (score=.73)
    MUC15ENSP000003037133STRING (score=.722)
    LGALS1ENSP000002159093STRING (score=.707)
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007155 cell adhesion NAS14676194
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for MUC16
    10/16 Novoseek chemical compound relationships for MUC16 gene (see all 16 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    b 723 50.66 3 1376598 (1), 8980361 (1), 10506443 (1)
    progesterone 35.17 22 8018399 (3), 1580164 (2), 9160304 (2), 15086841 (1) (see all 16)
    gdp 15.39 8 18332454 (3), 15012688 (2)
    sialic acid 8.39 6 8246875 (3), 10609502 (1), 11045795 (1)
    p-007 8.12 1 16828852 (1)
    tyrosine 4.48 4 9276028 (4)
    17-hydroxyprogesterone 4.03 7 8018399 (3), 1580164 (2)
    hematoxylin 1.72 1 18317224 (1)
    fibrinogen 0.00 2 2080860 (1), 16686279 (1)
    estradiol 0.00 7 1580164 (3), 9228498 (1), 18843968 (1), 11917376 (1) (see all 5)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Browse Invitrogen for RNAi
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_024690

                  Sigma-Aldrich siRNA for MUC16  
                         Browse shRNA at Sigma-Aldrich  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_024690  

    REFSEQ mRNAs for MUC16 gene: 

    NM_024690.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_024690  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_024690

    Additional cDNA sequence: 

    AF361486.3 AF414442.2 AK024365.1 AK056791.1 AK128856.1 AK128857.1 

    6 DOTS entries:

    DT.101979541  DT.301887  DT.91683855  DT.101979543  DT.101979542  DT.121611200 

    highest scoring ESTs for MUC16:

    AW992209 BE001831 BF868626 BG949756 AA076250 AA076251 AA425887 AA433988 AA661815 AI276341 

    Unigene Cluster for MUC16:

    Mucin 16, cell surface associated
    Hs.432676  [show with all ESTs]
    Unigene Representative Sequence: AF414442


    GeneLoc Exon Structure

    4 Ensembl transcripts including schematic representations:
    ENST00000380955  ENST00000397910  ENST00000331986  ENST00000380941  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    MUC16 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for MUC16

    1 / 2 / 3

    3 probe-sets matching MUC16 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    49094_at2, 3 U95-B 2 1.00 0.50 1.00 1.00 AI923224 0.60 0.83 0.73 1

    220196_at2, 3 U133-A 2 1.00 0.50 -- -- NM_024690 0.40 1.00 0.76 1

    220196_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --
    GeneDecks  MUC16 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CCTGATCTGC

    SOURCE GeneReport for Unigene cluster: Hs.432676

    UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7
    Tissue specificity: Expressed in corneal and conjunctival epithelia (at protein level).
    Overexpressed in ovarian carcinomas and ovarian low malignant potential (LMP) tumors as compared
    to the expression in normal ovarian tissue and ovarian adenomas

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for MUC16 gene from 4 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    MUC161   -- mucin 16, cell surface associated 77.57(n)
    70.04(a)
    476718  XM_533922.2  XP_533922.2 
    chimpanzee
    (Pan troglodytes)
    MUC161   -- mucin 16, cell surface associated 88.94(n)
    86.32(a)
    744458  XM_001149202.1  XP_001149202.1 
    mouse
    (Mus musculus)
    Muc165 9 mucin 16   -- AK003577 
    chicken
    (Gallus gallus)
    MUC161   -- mucin 16, cell surface associated 56.25(n)
    41.58(a)
    769718  XM_001233005.1  XP_001233006.1 
    About this table        Species with no ortholog for MUC16

    ENSEMBL Gene Tree for MUC16
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for MUC16 gene
    ENSG000002146392  MUC42  RBMXL32  MUC172  TPRXL2  MUC122  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section

    UniProtKB/Swiss-Prot: MUC16_HUMAN, Q8WXI7
    Polymorphism: The number of repeats is highly polymorphic


    10/970 NCBI SNPs in MUC16 are shown (see all 970 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 294)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 19 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs18676911,2
    A,C,F,H,O8926632(-) TGTCCA/GTTGGT 1 I/V mis1 ese37Minor allele frequency- G:0.22NA EU EA WA 562
    rs25915931,2
    A,C,F,H,O8936969(+) CCTGCC/TCTGGA 1 G/E mis1 ese37Minor allele frequency- T:0.26EU EA WA NA 558
    rs9535511,2
    A,C,F,H,O8937278(-) AAATAC/TGCCCC 1 T/M mis1 ese313Minor allele frequency- T:0.26EA NA EU WA 1162
    rs15967971,2
    A,C,F,H,O8949017(-) ATCAAA/CCTTAC 1 K/N mis112Minor allele frequency- N:0.00EA NA EU WA 1056
    rs25470721,2
    A,C,F,H,O8937083(+) CTGGTG/ATGACT 1 I/T mis1 ese37Minor allele frequency- A:0.26EU EA WA NA 562
    rs18624621,2
    A,C,F,H,O8938436(+) TCTTTG/AAAACC 1 L/S mis1 ese311Minor allele frequency- A:0.26NA EU EA WA 980
    rs16094581,2
    A,C,F,H,O8945299(-) CATGGA/GCCAGT 1 T/A mis1 ese312Minor allele frequency- G:0.38EU EA WA NA 1042
    rs25470651,2
    A,C,F,H,O8941462(-) GGGGAC/GCAGTC 1 S/T mis112Minor allele frequency- N:0.00EU EA WA NA 1054
    rs25915921,2
    A,C,F,H,O8936346(+) GATAAT/AACTTG 1 F/I mis111Minor allele frequency- A:0.38EU EA WA NA 982
    rs25470741,2
    C,F,H,O8937858(+) GGTTAC/TGTCCA 1 V/I mis1 ese315Minor allele frequency- T:0.26EU EA WA NA 1400
    About this table

    HapMap Linkage Disequilibrium images for MUC16 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 606154

    10/97 Novoseek disease relationships for MUC16 gene (see all 97 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    ovarian cancer 88.38 310 17643440 (6), 16061277 (6), 10475127 (6), 17565840 (5) (see all 99)
    ovarian carcinoma 84.42 84 12404282 (6), 1965803 (4), 12366659 (4), 12821338 (3) (see all 54)
    ovarian tumor benign 83.87 11 1972127 (3), 10985621 (1), 16764622 (1), 12816688 (1) (see all 9)
    recurrent ovarian cancer 79.97 15 15161704 (4), 12795808 (3), 17227902 (2), 1320853 (1) (see all 8)
    ascites 72.66 73 12366659 (6), 17641444 (4), 16515612 (3), 10985621 (2) (see all 45)
    cystadenocarcinoma serous 72.56 12 1506732 (2), 9852392 (2), 8494699 (1), 9329572 (1) (see all 6)
    stage ovarian cancer 69.42 4 10402722 (1), 18414853 (1), 17498784 (1), 19060592 (1)
    meigs syndrome 67.92 6 16515612 (3), 15906965 (2), 10192495 (1)
    tumors 67.35 373 9234924 (6), 16880776 (6), 17113137 (5), 16942793 (5) (see all 99)
    adnexal mass 66.83 4 17335881 (1), 18061248 (1), 17290603 (1), 18177570 (1)
    About this table

    Human Genome Epidemiology Navigator: MUC16 (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/614 PubMed articles for MUC16 gene (see all 614 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 94025 HGNC: 15582 Ensembl:ENSG00000181143 euGenes: HUgn94025 ECgene: MUC16
    H-InvDB: MUC16
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for MUC16 Genetics and Cytogenetics in Oncology and Haematology
    Mucin databasehttp://www.medkem.gu.se/mucinbiology/databases/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for MUC16:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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