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Aliases for MTMR9LP Gene

Aliases for MTMR9LP Gene

  • Myotubularin Related Protein 9-Like, Pseudogene 2 3 5
  • Myotubularin Related Protein 9 Pseudogene 3
  • Myotubularin Related Protein 9-Like 2
  • MTMR9L 3

External Ids for MTMR9LP Gene

Previous HGNC Symbols for MTMR9LP Gene

  • MTMR9L

Previous GeneCards Identifiers for MTMR9LP Gene

  • GC01M032698

Summaries for MTMR9LP Gene

GeneCards Summary for MTMR9LP Gene

MTMR9LP (Myotubularin Related Protein 9-Like, Pseudogene) is a Pseudogene.

Additional gene information for MTMR9LP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MTMR9LP Gene

Genomics for MTMR9LP Gene

GeneHancer (GH) Regulatory Elements for MTMR9LP Gene

Promoters and enhancers for MTMR9LP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I032239 Promoter/Enhancer 1.4 Ensembl ENCODE 565.8 +0.7 667 3.7 HDGF ZFP64 ARID4B SIN3A YBX1 ZNF48 ZNF280A SLC30A9 GLIS2 FOS MTMR9LP SNRNP40 TSSK3 TXLNA RBBP4 ENSG00000224066 DCDC2B KPNA6 KHDRBS1 TMEM39B
GH01I031924 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.7 +305.9 305877 22.1 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 GC01P031934 PTP4A2 TXLNA SNRNP40 KHDRBS1 RBBP4 ENSG00000229447 TSSK3 ZBTB8A TMEM39B
GH01I032246 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.4 -10.8 -10801 11.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 LCK FAM167B MTMR9LP LRRC37A12P CCDC28B BSDC1 PTP4A2 GC01M032258
GH01I031951 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.2 +285.6 285640 9.1 DMAP1 YBX1 IRF4 YY1 E2F8 ZC3H11A MEF2D GLIS1 RCOR2 NBN SNRNP40 KHDRBS1 TXLNA RBBP4 TSSK3 TMEM39B ENSG00000229447 ZBTB8A IQCC ENSG00000228634
GH01I032262 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -23.7 -23678 4.8 ZNF493 ZNF529 ZFP64 RARA ZNF213 SCRT2 ZNF654 ZNF680 ZBTB11 CEBPB TXLNA RBBP4 SNRNP40 KHDRBS1 TSSK3 TMEM39B ZBTB8A ZNF362 DCDC2B S100PBP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MTMR9LP on UCSC Golden Path with GeneCards custom track

Genomic Locations for MTMR9LP Gene

Genomic Locations for MTMR9LP Gene
chr1:32,231,658-32,241,710
(GRCh38/hg38)
Size:
10,053 bases
Orientation:
Minus strand
chr1:32,697,259-32,707,311
(GRCh37/hg19)

Genomic View for MTMR9LP Gene

Genes around MTMR9LP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTMR9LP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTMR9LP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTMR9LP Gene

Proteins for MTMR9LP Gene

Post-translational modifications for MTMR9LP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MTMR9LP Gene

Domains & Families for MTMR9LP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MTMR9LP Gene

Function for MTMR9LP Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MTMR9LP Gene

Localization for MTMR9LP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MTMR9LP Gene

Pathways & Interactions for MTMR9LP Gene

SuperPathways for MTMR9LP Gene

No Data Available

Interacting Proteins for MTMR9LP Gene

Gene Ontology (GO) - Biological Process for MTMR9LP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MTMR9LP Gene

Drugs & Compounds for MTMR9LP Gene

No Compound Related Data Available

Transcripts for MTMR9LP Gene

Unigene Clusters for MTMR9LP Gene

Myotubularin related protein 9-like, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MTMR9LP Gene

No ASD Table

Relevant External Links for MTMR9LP Gene

GeneLoc Exon Structure for
MTMR9LP
ECgene alternative splicing isoforms for
MTMR9LP

Expression for MTMR9LP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MTMR9LP Gene

NURSA nuclear receptor signaling pathways regulating expression of MTMR9LP Gene:

MTMR9LP

SOURCE GeneReport for Unigene cluster for MTMR9LP Gene:

Hs.471067
genes like me logo Genes that share expression patterns with MTMR9LP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MTMR9LP Gene

Orthologs for MTMR9LP Gene

Evolution for MTMR9LP Gene

ENSEMBL:
Gene Tree for MTMR9LP (if available)
TreeFam:
Gene Tree for MTMR9LP (if available)

No data available for Orthologs for MTMR9LP Gene

Paralogs for MTMR9LP Gene

No data available for Paralogs for MTMR9LP Gene

Variants for MTMR9LP Gene

Sequence variations from dbSNP and Humsavar for MTMR9LP Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000114166 -- 32,243,448(-) A/G upstream_transcript_variant
rs1001600952 -- 32,241,603(-) G/A non_coding_transcript_variant
rs1001784433 -- 32,235,015(-) C/T non_coding_transcript_variant
rs1001900008 -- 32,234,650(-) C/A/T intron_variant
rs1001918662 -- 32,236,267(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MTMR9LP Gene

Variant ID Type Subtype PubMed ID
esv2662740 CNV deletion 23128226
nsv300 CNV insertion 18451855

Additional Variant Information for MTMR9LP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTMR9LP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MTMR9LP Gene

Disorders for MTMR9LP Gene

Additional Disease Information for MTMR9LP

No disorders were found for MTMR9LP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MTMR9LP Gene

Publications for MTMR9LP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MTMR9LP Gene

Sources for MTMR9LP Gene

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