Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MTMR9LP Gene

Aliases for MTMR9LP Gene

  • Myotubularin Related Protein 9-Like, Pseudogene 2 3 5
  • Myotubularin Related Protein 9 Pseudogene 3
  • Myotubularin Related Protein 9-Like 2
  • MTMR9L 3

External Ids for MTMR9LP Gene

Previous HGNC Symbols for MTMR9LP Gene

  • MTMR9L

Previous GeneCards Identifiers for MTMR9LP Gene

  • GC01M032698

Summaries for MTMR9LP Gene

GeneCards Summary for MTMR9LP Gene

MTMR9LP (Myotubularin Related Protein 9-Like, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MTMR9LP Gene

Genomics for MTMR9LP Gene

Regulatory Elements for MTMR9LP Gene

Enhancers for MTMR9LP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G032246 2 FANTOM5 Ensembl ENCODE dbSUPER 23.2 -10.8 -10801 11.9 CREB3L1 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MTMR9LP LCK ZBTB8B LRRC37A12P CCDC28B BSDC1 PTP4A2 GC01M032258
GH01G031924 2.1 FANTOM5 Ensembl ENCODE dbSUPER 15.7 +305.9 305878 22.1 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 SNRNP40 ENSG00000229447 TSSK3 LOC105378626 EIF3I MTMR9LP KHDRBS1 HDAC1 ENSG00000224066 ENSG00000203325
GH01G032262 1.8 FANTOM5 Ensembl ENCODE dbSUPER 16.5 -23.7 -23678 4.8 HDGF ZNF493 ZFP64 ZNF121 GATA2 FOS REST ZNF623 ZNF518A MEF2D SNRNP40 EIF3I MTMR9LP ZBTB8B KPNA6 TSSK3 DCDC2B ENSG00000270115 LCK TXLNA
GH01G032988 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11 -749.6 -749569 6.6 HDGF PKNOX1 ARNT ZFP64 SIN3A YBX1 ZNF766 FOS KLF13 DEK RNF19B ZBTB8B EIF3I DCDC2B ENSG00000239670 KPNA6 TSSK3 AK2 AZIN2 MTMR9LP
GH01G032271 1.6 Ensembl ENCODE dbSUPER 11.2 -31.8 -31840 5.1 HDGF CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF263 SP3 SNRNP40 ZBTB8B TSSK3 MTMR9LP ADGRB2 IQCC ENSG00000235790 KPNA6 LRRC37A12P TXLNA
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MTMR9LP on UCSC Golden Path with GeneCards custom track

Promoters for MTMR9LP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004335 710 1601 AGO1 ZFP64 ARID4B SIN3A ZNF48 SLC30A9 GLIS2 FOS SP3 MXD4

Genomic Location for MTMR9LP Gene

Chromosome:
1
Start:
32,231,658 bp from pter
End:
32,241,710 bp from pter
Size:
10,053 bases
Orientation:
Minus strand

Genomic View for MTMR9LP Gene

Genes around MTMR9LP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTMR9LP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTMR9LP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTMR9LP Gene

Proteins for MTMR9LP Gene

Post-translational modifications for MTMR9LP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MTMR9LP Gene

Domains & Families for MTMR9LP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MTMR9LP Gene

Function for MTMR9LP Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MTMR9LP Gene

Localization for MTMR9LP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MTMR9LP Gene

Pathways & Interactions for MTMR9LP Gene

SuperPathways for MTMR9LP Gene

No Data Available

Interacting Proteins for MTMR9LP Gene

Gene Ontology (GO) - Biological Process for MTMR9LP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MTMR9LP Gene

Drugs & Compounds for MTMR9LP Gene

No Compound Related Data Available

Transcripts for MTMR9LP Gene

Unigene Clusters for MTMR9LP Gene

Myotubularin related protein 9-like, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MTMR9LP Gene

No ASD Table

Relevant External Links for MTMR9LP Gene

GeneLoc Exon Structure for
MTMR9LP
ECgene alternative splicing isoforms for
MTMR9LP

Expression for MTMR9LP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MTMR9LP Gene

NURSA nuclear receptor signaling pathways regulating expression of MTMR9LP Gene:

MTMR9LP

SOURCE GeneReport for Unigene cluster for MTMR9LP Gene:

Hs.471067
genes like me logo Genes that share expression patterns with MTMR9LP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MTMR9LP Gene

Orthologs for MTMR9LP Gene

Evolution for MTMR9LP Gene

ENSEMBL:
Gene Tree for MTMR9LP (if available)
TreeFam:
Gene Tree for MTMR9LP (if available)

No data available for Orthologs for MTMR9LP Gene

Paralogs for MTMR9LP Gene

No data available for Paralogs for MTMR9LP Gene

Variants for MTMR9LP Gene

Sequence variations from dbSNP and Humsavar for MTMR9LP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000114166 -- 32,243,448(+) AAAAA(A/G)GCCAA upstream-variant-2KB
rs1001600952 -- 32,241,603(+) AGTGA(A/G)AGACC nc-transcript-variant
rs1001784433 -- 32,235,015(+) GTCAG(C/T)GGCAG nc-transcript-variant
rs1001900008 -- 32,234,650(+) GGGCA(A/C/T)GAGGA intron-variant
rs1001918662 -- 32,236,267(+) GCTGC(A/C)CACAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MTMR9LP Gene

Variant ID Type Subtype PubMed ID
esv2662740 CNV deletion 23128226
nsv300 CNV insertion 18451855

Relevant External Links for MTMR9LP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTMR9LP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MTMR9LP Gene

Disorders for MTMR9LP Gene

Relevant External Links for MTMR9LP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MTMR9LP

No disorders were found for MTMR9LP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MTMR9LP Gene

Publications for MTMR9LP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MTMR9LP Gene

Sources for MTMR9LP Gene

Content
Loading form....