Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MTMR9LP Gene

Aliases for MTMR9LP Gene

  • Myotubularin Related Protein 9-Like, Pseudogene 2 3 5
  • Myotubularin Related Protein 9 Pseudogene 3
  • Myotubularin Related Protein 9-Like 2
  • MTMR9L 3

External Ids for MTMR9LP Gene

Previous HGNC Symbols for MTMR9LP Gene

  • MTMR9L

Previous GeneCards Identifiers for MTMR9LP Gene

  • GC01M032698

Summaries for MTMR9LP Gene

GeneCards Summary for MTMR9LP Gene

MTMR9LP (Myotubularin Related Protein 9-Like, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MTMR9LP Gene

Genomics for MTMR9LP Gene

Regulatory Elements for MTMR9LP Gene

Enhancers for MTMR9LP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F031924 1.3 FANTOM5 ENCODE 29.5 +305.9 305878 22.1 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 SNRNP40 ENSG00000229447 EIF3I TSSK3 MTMR9LP LOC105378626 KPNA6 ENSG00000224066 FAM167B KHDRBS1
GH01F032350 0.8 ENCODE 23.8 -111.0 -111021 4.4 MLX CREB3L1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 EIF3I ENSG00000224066 LOC105378626 TSSK3 MTMR9LP KPNA6 DCDC2B IQCC FAM167B LOC105378629
GH01F033126 1.2 FANTOM5 Ensembl ENCODE 23.7 -886.0 -886005 3.4 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 MTMR9LP EIF3I FAM167B TSSK3 ENSG00000239670 TRIM62 GC01P033127 GC01P033128
GH01F032813 0.8 FANTOM5 ENCODE 23.7 -575.5 -575532 7.3 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 EIF3I MTMR9LP KPNA6 FNDC5 S100PBP TSSK3 FAM167B ENSG00000224066 YARS
GH01F032649 1.2 ENCODE 23.7 -409.5 -409494 3.9 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 MTMR9LP EIF3I ENSG00000224066 FAM167B SYNC RBBP4 GC01M032669
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MTMR9LP on UCSC Golden Path with GeneCards custom track

Promoters for MTMR9LP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000534049 810 1801 CBX3 ZFP64 ARID4B SIN3A ZNF48 ZSCAN9 RAD21 SLC30A9 GLIS2 RCOR1

Genomic Location for MTMR9LP Gene

Chromosome:
1
Start:
32,231,658 bp from pter
End:
32,241,710 bp from pter
Size:
10,053 bases
Orientation:
Minus strand

Genomic View for MTMR9LP Gene

Genes around MTMR9LP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTMR9LP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTMR9LP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTMR9LP Gene

Proteins for MTMR9LP Gene

Post-translational modifications for MTMR9LP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MTMR9LP Gene

Domains & Families for MTMR9LP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MTMR9LP Gene

Function for MTMR9LP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MTMR9LP Gene

Localization for MTMR9LP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MTMR9LP Gene

Pathways & Interactions for MTMR9LP Gene

SuperPathways for MTMR9LP Gene

No Data Available

Interacting Proteins for MTMR9LP Gene

Gene Ontology (GO) - Biological Process for MTMR9LP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MTMR9LP Gene

Transcripts for MTMR9LP Gene

Unigene Clusters for MTMR9LP Gene

Myotubularin related protein 9-like, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MTMR9LP Gene

No ASD Table

Relevant External Links for MTMR9LP Gene

GeneLoc Exon Structure for
MTMR9LP
ECgene alternative splicing isoforms for
MTMR9LP

Expression for MTMR9LP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MTMR9LP Gene

NURSA nuclear receptor signaling pathways regulating expression of MTMR9LP Gene:

MTMR9LP

SOURCE GeneReport for Unigene cluster for MTMR9LP Gene:

Hs.471067
genes like me logo Genes that share expression patterns with MTMR9LP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MTMR9LP Gene

Orthologs for MTMR9LP Gene

Evolution for MTMR9LP Gene

ENSEMBL:
Gene Tree for MTMR9LP (if available)
TreeFam:
Gene Tree for MTMR9LP (if available)

No data available for Orthologs for MTMR9LP Gene

Paralogs for MTMR9LP Gene

No data available for Paralogs for MTMR9LP Gene

Variants for MTMR9LP Gene

Sequence variations from dbSNP and Humsavar for MTMR9LP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111240679 -- 32,238,203(+) CAGAC(C/T)AGCCT intron-variant
rs111731630 -- 32,232,555(+) CGGGA(A/G)AGGGC intron-variant
rs111733850 -- 32,239,991(+) GCCCA(A/G)GGACG nc-transcript-variant
rs111815707 -- 32,243,625(+) CTTGG(A/G)AGGCT upstream-variant-2KB
rs111825471 -- 32,231,976(+) TGAGG(A/G)GGAGG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MTMR9LP Gene

Variant ID Type Subtype PubMed ID
esv2662740 CNV deletion 23128226
nsv300 CNV insertion 18451855

Relevant External Links for MTMR9LP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTMR9LP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MTMR9LP Gene

Disorders for MTMR9LP Gene

Relevant External Links for MTMR9LP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MTMR9LP

No disorders were found for MTMR9LP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MTMR9LP Gene

Publications for MTMR9LP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MTMR9LP Gene

Sources for MTMR9LP Gene

Content
Loading form....