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Aliases for MTFR1L Gene

Aliases for MTFR1L Gene

  • Mitochondrial Fission Regulator 1 Like 2 3 5
  • Mitochondrial Fission Regulator 1-Like 2 3
  • FAM54B 3 4
  • Family With Sequence Similarity 54, Member B 2
  • Family With Sequence Similarity 54 Member B 3
  • Protein FAM54B 3
  • HYST1888 3
  • MSTP116 3
  • MST116 3

External Ids for MTFR1L Gene

Previous HGNC Symbols for MTFR1L Gene

  • FAM54B

Previous GeneCards Identifiers for MTFR1L Gene

  • GC01P026147

Summaries for MTFR1L Gene

GeneCards Summary for MTFR1L Gene

MTFR1L (Mitochondrial Fission Regulator 1 Like) is a Protein Coding gene. An important paralog of this gene is MTFR1.

Gene Wiki entry for MTFR1L Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MTFR1L Gene

Genomics for MTFR1L Gene

Regulatory Elements for MTFR1L Gene

Enhancers for MTFR1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F025817 0.4 ENCODE 43.5 +1.4 1392 4.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 MTFR1L SELENON PIGV LOC101928728 LOC646471
GH01F025867 1 ENCODE 41.1 +49.3 49269 1.8 ELF3 SOX5 TBP DRAP1 L3MBTL2 HLF CEBPB RAD21 NR2F2 YY1 MTFR1L EXTL1 MIR3917 STMN1 ENSG00000252190 ENSG00000252691 RNU6-110P ENSG00000236528 PAQR7
GH01F025858 1 FANTOM5 ENCODE 40 +41.9 41929 4.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF416 ZNF143 MTFR1L SELENON ENSG00000207302 ENSG00000231953 ENSG00000261025 RPL39P7 ZNF593 LIN28A FAM110D ENSG00000236528
GH01F025870 1.2 FANTOM5 ENCODE 37 +55.0 54956 6.6 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B FEZF1 DMAP1 YY1 SLC30A9 MTFR1L ENSG00000207302 ENSG00000231953 ENSG00000261025 RPL39P7 LIN28A SELENON CNKSR1 PAQR7 ENSG00000236528
GH01F025885 0.5 ENCODE 31.4 +67.6 67576 2.3 GATAD2A BCOR ZNF362 ZNF384 ZNF121 BCL6 PRDM10 SMAD4 WT1 MTFR1L ENSG00000252190 ENSG00000252691 RNU6-110P EXTL1 SLC30A2 SELENON TRIM63 PAQR7 SNRPFP2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MTFR1L on UCSC Golden Path with GeneCards custom track

Promoters for MTFR1L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001038692 1660 2201 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for MTFR1L Gene

Chromosome:
1
Start:
25,818,640 bp from pter
End:
25,832,942 bp from pter
Size:
14,303 bases
Orientation:
Plus strand

Genomic View for MTFR1L Gene

Genes around MTFR1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MTFR1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MTFR1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MTFR1L Gene

Proteins for MTFR1L Gene

  • Protein details for MTFR1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H019-MFR1L_HUMAN
    Recommended name:
    Mitochondrial fission regulator 1-like
    Protein Accession:
    Q9H019
    Secondary Accessions:
    • A6NCB4
    • B7WNV5
    • D3DPJ4
    • Q63HP1
    • Q7Z2S7
    • Q9NUI7

    Protein attributes for MTFR1L Gene

    Size:
    292 amino acids
    Molecular mass:
    31957 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAQ13638.1; Type=Frameshift; Positions=7, 49; Evidence={ECO:0000305};

    Alternative splice isoforms for MTFR1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MTFR1L Gene

Post-translational modifications for MTFR1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MTFR1L Gene

Domains & Families for MTFR1L Gene

Protein Domains for MTFR1L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MTFR1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H019

UniProtKB/Swiss-Prot:

MFR1L_HUMAN :
  • Belongs to the MTFR1 family.
Family:
  • Belongs to the MTFR1 family.
genes like me logo Genes that share domains with MTFR1L: view

No data available for Gene Families for MTFR1L Gene

Function for MTFR1L Gene

Gene Ontology (GO) - Molecular Function for MTFR1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with MTFR1L: view
genes like me logo Genes that share phenotypes with MTFR1L: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MTFR1L Gene

Localization for MTFR1L Gene

Gene Ontology (GO) - Cellular Components for MTFR1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IBA --
genes like me logo Genes that share ontologies with MTFR1L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for MTFR1L Gene

Pathways & Interactions for MTFR1L Gene

SuperPathways for MTFR1L Gene

No Data Available

Gene Ontology (GO) - Biological Process for MTFR1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000266 mitochondrial fission IBA --
GO:0009060 aerobic respiration IBA --
genes like me logo Genes that share ontologies with MTFR1L: view

No data available for Pathways by source and SIGNOR curated interactions for MTFR1L Gene

Transcripts for MTFR1L Gene

Unigene Clusters for MTFR1L Gene

Mitochondrial fission regulator 1-like:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MTFR1L Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b · 11c ^ 12a · 12b ^ 13a · 13b ·
SP1: - - - - - - -
SP2: - - -
SP3: - - - - - - - -
SP4: - - - - - - - - -
SP5: - - - - - -
SP6: - - - - - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - -
SP9: - -
SP10: - -
SP11: - -
SP12: - - - - - - - - - - -
SP13: - - - - - - - - - - - - -
SP14:

ExUns: 13c · 13d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:

Relevant External Links for MTFR1L Gene

GeneLoc Exon Structure for
MTFR1L
ECgene alternative splicing isoforms for
MTFR1L

Expression for MTFR1L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MTFR1L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for MTFR1L Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.0), Colon (7.2), and Placenta (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MTFR1L Gene



Protein tissue co-expression partners for MTFR1L Gene

NURSA nuclear receptor signaling pathways regulating expression of MTFR1L Gene:

MTFR1L

SOURCE GeneReport for Unigene cluster for MTFR1L Gene:

Hs.149305
genes like me logo Genes that share expression patterns with MTFR1L: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MTFR1L Gene

Orthologs for MTFR1L Gene

This gene was present in the common ancestor of chordates.

Orthologs for MTFR1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM54B 34 35
  • 99.89 (n)
cow
(Bos Taurus)
Mammalia MTFR1L 34 35
  • 93.54 (n)
dog
(Canis familiaris)
Mammalia MTFR1L 34 35
  • 93.04 (n)
rat
(Rattus norvegicus)
Mammalia Mtfr1l 34
  • 91.12 (n)
oppossum
(Monodelphis domestica)
Mammalia MTFR1L 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mtfr1l 34 16 35
  • 89.85 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MTFR1L 35
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves MTFR1L 35
  • 78 (a)
OneToOne
FAM54B 34
  • 73.5 (n)
lizard
(Anolis carolinensis)
Reptilia MTFR1L 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mtfr1l 34
  • 61.09 (n)
zebrafish
(Danio rerio)
Actinopterygii mtfr1l 34 35
  • 60.17 (n)
wufi39f11 34
Species where no ortholog for MTFR1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MTFR1L Gene

ENSEMBL:
Gene Tree for MTFR1L (if available)
TreeFam:
Gene Tree for MTFR1L (if available)

Paralogs for MTFR1L Gene

Paralogs for MTFR1L Gene

genes like me logo Genes that share paralogs with MTFR1L: view

Variants for MTFR1L Gene

Sequence variations from dbSNP and Humsavar for MTFR1L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1044183 -- 25,818,054(+) TGGAA(A/T)ATGAT upstream-variant-2KB, utr-variant-3-prime
rs1044488 -- 25,832,743(+) GGAAA(A/G)AGAGA intron-variant, utr-variant-3-prime
rs1044494 -- 25,832,745(+) AAAGA(A/G)AGAGG intron-variant, utr-variant-3-prime
rs1044496 -- 25,832,747(+) AGAGA(A/G)AGGAG intron-variant, utr-variant-3-prime
rs1044508 -- 25,832,778(+) TCTTT(C/T)TTCCA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MTFR1L Gene

Variant ID Type Subtype PubMed ID
esv1998326 CNV deletion 18987734
esv2671091 CNV deletion 23128226
nsv460884 CNV loss 19166990
nsv545883 CNV loss 21841781
nsv7490 CNV deletion 18451855
nsv834491 CNV loss 17160897

Variation tolerance for MTFR1L Gene

Residual Variation Intolerance Score: 71.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.60; 56.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MTFR1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MTFR1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MTFR1L Gene

Disorders for MTFR1L Gene

Relevant External Links for MTFR1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MTFR1L

No disorders were found for MTFR1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MTFR1L Gene

Publications for MTFR1L Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PMID: 15221005) Yamada S. … Nakagawara A. (Oncogene 2004) 3 4 64
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3 64
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3 64
  5. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X. … Vidal M. (Cell 2016) 3 64

Products for MTFR1L Gene

Sources for MTFR1L Gene

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