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Aliases & Descriptions for MTA2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686F2281 2 MTA1-L1 1 MTA1L1 2 , 3 PID 2 , 3
Descriptions MTA1-L1 protein 3 Metastasis-associated 1-like 1 2 , 3 metastasis -associated gene 1-like 1 2 metastasis associated 1 family, member 2 2 metastasis associated gene family, member 2 1 , 2 metastasis-associated protein 2 2 p53 target protein in deacetylase complex 3
Search outside databases for aliases for MTA2 genePrevious GC identifer: GC11M062136
Summaries for MTA2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MTA2 : This gene encodes a protein that has been identified as a component of NuRD, a nucleosomeremodeling deacetylase complex identified in the nucleus of human cells. It shows a very broadexpression pattern and is strongly expressed in many tissues. It may represent one member of asmall gene family that encode different but related proteins involved either directly orindirectly in transcriptional regulation. Their indirect effects on transcriptional regulation mayinclude chromatin remodeling. It is closely related to another member of this family, a proteinthat has been correlated with the metastatic potential of certain carcinomas. These two proteinsare so closely related that they share the same types of domains. These domains include two DNAbinding domains, a dimerization domain, and a domain commonly found in proteins that methylateDNA. One of the proteins known to be a target protein for this gene product is p53. Deacteylationof p53 is correlated with a loss of growth inhibition in transformed cells supporting a connectionbetween these gene family members and metastasis. [provided by RefSeq] UniProtKB/Swiss-Prot: MTA2_HUMAN, O94776 Function : May be involved in the regulation of gene expression as repressor and activator. Therepression might be related to covalent modification of histone proteins
Gene Wiki entry for MTA2
Genomic Location for MTA2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MTA2 gene Entrez Gene cytogenetic band: 11q12-q13.1 Ensembl cytogenetic band: 11q12.3 HGNC cytogenetic band: 11q12-q13.1 MTA2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M062119:
(about GC identifiers )
Start:
62,117,251 bp from pter
End:
62,125,879 bp from pter
Size:
8,629 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_033903.7 Proteins for MTA2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MTA2_HUMAN, O94776 (See
protein sequence )Recommended Name: Metastasis-associated protein MTA2 Size : 668 amino acids; 75023 Da
Subunit : Component of the nucleosome-remodeling and histone-deacetylase multiprotein complex(NuRD). Interacts with HDAC7, p53/TP53, MINT and MBD3 (By similarity)
Subcellular location : Nucleus (By similarity)
Sequence caution : Sequence=AAH23656.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence.Potential poly-A sequence;
Secondary accessions : Q9UQB5
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_004730.2 ENSEMBL proteins: ENSP00000278823 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for MTA2: Assays for MTA2:
Protein
Domains/ Families for MTA2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O94776 ProtoNet protein and cluster: O94776
3 Blocks protein families : IPB000679 Zn-finger IPB000949 ELM2 domain IPB001025 Bromo adjacent region UniProtKB/Swiss-Prot: MTA2_HUMAN, O94776 Similarity : Contains 1 BAH domainSimilarity : Contains 1 ELM2 domainSimilarity : Contains 1 GATA-type zinc fingerSimilarity : Contains 1 SANT domain
Gene Function for MTA2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004739 Applied Biosystems Silencer ® siRNAs for MTA2 Sigma-Aldrich siRNA for MTA2 Sigma-Aldrich shRNA for MTA2 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004739                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004739                                  untagged cDNA clone in CMV expression vector: NM_004739  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004739 UniProtKB/Swiss-Prot: MTA2_HUMAN, O94776 Function : May be involved in the regulation of gene expression as repressor and activator. Therepression might be related to covalent modification of histone proteins
12 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Mta2) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
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Pathways & Interactions for MTA2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for MTA2 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for MTA2 5/31 Interacting proteins for MTA2 (ENSP00000278823 3 O94776 2 ) via UniProtKB, MINT, and/or STRING (see all 31
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IEA -- GO:0006333 chromatin assembly or disassembly
TAS 10444591 GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0045944 positive regulation of transcription from RNA polymerase II promoter
IEA --
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Drugs & Compounds for MTA2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MTA2
Transcripts for MTA2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004739 Sigma-Aldrich siRNA for MTA2 Sigma-Aldrich shRNA for MTA2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004739
REFSEQ mRNAs for MTA2 gene: NM_004739.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004739
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004739                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004739                                  untagged cDNA clone in CMV expression vector: NM_004739  
Additional cDNA sequence: AB016591.1 AF295807.1 AK301569.1 BC023656.2 BC053650.1 CR601321.1 CR749481.1
12 DOTS entries : DT.40120984 DT.100816505 DT.100023584 DT.97861405 DT.120740843 DT.91748966 DT.100699305 DT.99975877 DT.120740817 DT.91748286 DT.91981747 DT.99930197
19 AceView cDNA sequences :BM563145 BG765875 AL580744 CK819574 BM129842 BG765494 BM129583 BE148666 BM748993 BF921441 BX473072 BF933478 BQ354007 BF897932 BF990046 BI761567 AW605885 BM129316 AA861111
highest scoring ESTs for MTA2 :AB016591 AF295807 AL561056 AL580744 BC023656 BC053650 BG682762 BX340764 BX403752 BX406524
Unigene Cluster for MTA2: Metastasis associated 1 family, member 2 Hs.173043 [show with all ESTs ] Unigene Representative Sequence: NM_004739 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for MTA2 (see all 9
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ SP1 :                                                     SP2 :                                                     SP3 :     -     -           -                                   SP4 :     -     -                                             SP5 :         -                                            
ExUns: 20a · 20b ^ 21 SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for MTA2 1 Ensembl transcript including schematic representation : ENST00000278823
Expression for MTA2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MTA2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MTA2 1 / 2 / 3
2 probe-sets matching MTA2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGGGAACCTASOURCE GeneReport for Unigene cluster: Hs.173043 Expression variation in blood from EXPOLDB for MTA2
UniProtKB/Swiss-Prot: MTA2_HUMAN, O94776 Tissue specificity : Widely expressed
Orthologs for MTA2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MTA2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for MTA2 ENSEMBL Gene Tree for MTA2 Paralogs for MTA2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for MTA2 gene MTA3 2 MTA1 2
SNPs/Variants for MTA2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for MTA2 (up to first 250kb)
Disorders & Mutations for MTA2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603947 3 Novoseek disease relationships for MTA2 gene
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Medical News for MTA2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for MTA2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/39 PubMed articles for MTA2 gene (see all 39
): Molecular cloning, mapping and characterization of a novel human gene, MTA1-L1. showing homology to a metastasis-associated gene, MTA1. (PubMed id 9929979) 1, 2, 3, 4 Futamura M....Tokino T. (1999) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Sharp, an inducible cofactor that integrates nuclear receptor repression and activation. (PubMed id 11331609) 3, 4 Shi Y....Evans R.M. (2001) Deacetylation of p53 modulates its effect on cell growth and apoptosis. (PubMed id 11099047) 3, 4 Luo J.... Gu W. (2000) The metastasis-associated proteins 1 and 2 form distinct protein complexes with histone deacetylase activity. (PubMed id 12920132) 1, 3 Yao Y.-L. and Yang W.-M. (2003) The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2. (PubMed id 12124384) 1, 3 Saito M. and Ishikawa F. (2002) Molecular association between ATR and two components of the nucleosome remodeling and deacetylating complex, HDAC2 and CHD4. (PubMed id 10545197) 1, 3 Schmidt D.R. and Schreiber S.L. (1999) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 4 Cantin G.T....Yates J.R. III (2008) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 4 Daub H.... Mann M. (2008)
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Genome Databases showing MTA2
(According to
Entrez Gene ,
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing MTA2
(According to HUGE )
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Specialized Databases showing MTA2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for MTA2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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