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Aliases for MT1JP Gene

Aliases for MT1JP Gene

  • Metallothionein 1J, Pseudogene 2 3 5
  • Metallothionein 1N, Pseudogene 2 3
  • Metallothionein 1M Pseudogene 3
  • Metallothionein 1J 2
  • Metallothionein B 3
  • MT1NP 3
  • MT1J 3
  • MT1 3
  • MTB 3

External Ids for MT1JP Gene

Previous HGNC Symbols for MT1JP Gene

  • MT1
  • MT1NP
  • MT1J

Previous GeneCards Identifiers for MT1JP Gene

  • GC16P055228
  • GC16P056669

Summaries for MT1JP Gene

GeneCards Summary for MT1JP Gene

MT1JP (Metallothionein 1J, Pseudogene) is a Pseudogene. Among its related pathways are Copper homeostasis.

Additional gene information for MT1JP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT1JP Gene

Genomics for MT1JP Gene

Regulatory Elements for MT1JP Gene

Enhancers for MT1JP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H056637 0.7 ENCODE 0.7 +2.8 2786 1 DRAP1 FOXA2 SAP130 SUZ12 TAF1 MAX RARA YY1 POLR2A NR2F6 MT1A MT1E MT1JP
GH16H056631 0.5 ENCODE 0.7 -3.3 -3266 1 SUZ12 MXD3 EZH2 YY1 MT1L MT1E CCL17 MT1JP MT1M
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MT1JP on UCSC Golden Path with GeneCards custom track

Genomic Location for MT1JP Gene

Chromosome:
16
Start:
56,635,739 bp from pter
End:
56,637,086 bp from pter
Size:
1,348 bases
Orientation:
Plus strand

Genomic View for MT1JP Gene

Genes around MT1JP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MT1JP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MT1JP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MT1JP Gene

Proteins for MT1JP Gene

Post-translational modifications for MT1JP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MT1JP Gene

Domains & Families for MT1JP Gene

Suggested Antigen Peptide Sequences for MT1JP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT1JP: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MT1JP Gene

Function for MT1JP Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MT1JP
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT1JP Gene

Localization for MT1JP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MT1JP Gene

Pathways & Interactions for MT1JP Gene

SuperPathways for MT1JP Gene

SuperPathway Contained pathways
1 Copper homeostasis
genes like me logo Genes that share pathways with MT1JP: view

Pathways by source for MT1JP Gene

1 BioSystems pathway for MT1JP Gene

Interacting Proteins for MT1JP Gene

Gene Ontology (GO) - Biological Process for MT1JP Gene

None

No data available for SIGNOR curated interactions for MT1JP Gene

Drugs & Compounds for MT1JP Gene

No Compound Related Data Available

Transcripts for MT1JP Gene

mRNA/cDNA for MT1JP Gene

Unigene Clusters for MT1JP Gene

Metallothionein 1J, pseudogene:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MT1JP
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MT1JP Gene

No ASD Table

Relevant External Links for MT1JP Gene

GeneLoc Exon Structure for
MT1JP
ECgene alternative splicing isoforms for
MT1JP

Expression for MT1JP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MT1JP Gene

mRNA differential expression in normal tissues according to GTEx for MT1JP Gene

This gene is overexpressed in Liver (x10.9), Adipose - Visceral (Omentum) (x6.4), and Fallopian Tube (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of MT1JP Gene:

MT1JP

SOURCE GeneReport for Unigene cluster for MT1JP Gene:

Hs.736648
genes like me logo Genes that share expression patterns with MT1JP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MT1JP Gene

Orthologs for MT1JP Gene

Evolution for MT1JP Gene

ENSEMBL:
Gene Tree for MT1JP (if available)
TreeFam:
Gene Tree for MT1JP (if available)

No data available for Orthologs for MT1JP Gene

Paralogs for MT1JP Gene

No data available for Paralogs for MT1JP Gene

Variants for MT1JP Gene

Sequence variations from dbSNP and Humsavar for MT1JP Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1041297085 -- 56,635,268(+) GCGGG(G/T)GCTCT upstream-variant-2KB
rs11076159 -- 56,636,915(+) AGGGA(A/C/T)GTCGG nc-transcript-variant, upstream-variant-2KB
rs111226954 -- 56,636,864(+) CTTCT(A/G)CTGCC nc-transcript-variant, upstream-variant-2KB
rs113512917 -- 56,635,536(+) GCCCC(C/T)CACGC upstream-variant-2KB
rs113642275 -- 56,635,205(+) GACCG(C/T)GGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MT1JP Gene

Variant ID Type Subtype PubMed ID
dgv2988n100 CNV gain 25217958
dgv2989n100 CNV gain 25217958
dgv524e214 CNV gain 21293372
esv2669588 CNV deletion 23128226
esv3582251 CNV loss 25503493
esv3638704 CNV loss 21293372
nsv978154 CNV duplication 23825009

Relevant External Links for MT1JP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MT1JP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MT1JP Gene

Disorders for MT1JP Gene

Relevant External Links for MT1JP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MT1JP

No disorders were found for MT1JP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MT1JP Gene

Publications for MT1JP Gene

  1. Characterisation of six additional human metallothionein genes. (PMID: 8049263) Stennard FA … West AK (Biochimica et biophysica acta 1994) 2 3 22 60
  2. LncRNA MT1JP functions as a tumor suppressor by interacting with TIAR to modulate the p53 pathway. (PMID: 26909858) Liu L … Chen R (Oncotarget 2016) 2 3 60
  3. Human metallothionein genes: structure of the functional locus at 16q13. (PMID: 2286373) West AK … Richards RI (Genomics 1990) 2 3 60
  4. Heavy metal and growth hormone pathways in metallothionein regulation in fish RTH-149 cell line. (PMID: 19154796) Vergani L … Gallo G (Comparative biochemistry and physiology. Toxicology & pharmacology : CBP 2009) 22 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for MT1JP Gene

Sources for MT1JP Gene

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