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Aliases for MT1IP Gene

Subcategory (RNA class) for MT1IP Gene

lncRNA

Aliases for MT1IP Gene

  • Metallothionein 1I, Pseudogene 2 3
  • MT1I 3 6
  • Metallothionein 1I (Pseudogene) 3
  • Metallothionein 1I 2
  • Metallothionein E 3
  • MT1 3
  • MTE 3

External Ids for MT1IP Gene

ORGUL Members for MT1IP Gene

Previous Symbols for MT1IP Gene

  • MT1
  • MT1I

Summaries for MT1IP Gene

GeneCards Summary for MT1IP Gene

MT1IP (Metallothionein 1I, Pseudogene) is a Pseudogene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT1IP Gene

Genomics for MT1IP Gene

Genomic Location for MT1IP Gene

Start:
56,676,116 bp from pter
End:
56,677,877 bp from pter
Size:
1,762 bases
Orientation:
Plus strand

Genomic View for MT1IP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MT1IP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MT1IP Gene

Regulatory Elements for MT1IP Gene

Proteins for MT1IP Gene

Post-translational modifications for MT1IP Gene

No Post-translational modifications

Other Protein References for MT1IP Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for MT1IP Gene

Domains for MT1IP Gene

Gene Families for MT1IP Gene

HGNC:
  • MT :Metallothioneins
genes like me logo Genes that share domains with MT1IP: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MT1IP Gene

Function for MT1IP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MT1IP Gene

Localization for MT1IP Gene

No data available for Gene Ontology (GO) - Cellular Components for MT1IP Gene

Pathways for MT1IP Gene

SuperPathways for MT1IP Gene

No Data Available

Interacting Proteins for MT1IP Gene

Gene Ontology (GO) - Biological Process for MT1IP Gene

None

No data available for Pathways by source for MT1IP Gene

Transcripts for MT1IP Gene

mRNA/cDNA for MT1IP Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT1IP Gene

No ASD Table

Relevant External Links for MT1IP Gene

GeneLoc Exon Structure for
MT1IP
ECgene alternative splicing isoforms for
MT1IP

Expression for MT1IP Gene

SOURCE GeneReport for Unigene cluster for MT1IP Gene Hs.434199

No Expression Related Data Available

Orthologs for MT1IP Gene

Evolution for MT1IP Gene

ENSEMBL:
Gene Tree for MT1IP (if available)
TreeFam:
Gene Tree for MT1IP (if available)

No data available for Orthologs for MT1IP Gene

Paralogs for MT1IP Gene

No data available for Paralogs for MT1IP Gene

Variants for MT1IP Gene

Sequence variations from dbSNP and Humsavar for MT1IP Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs4783949 -- 56,677,497(+) AGGCT(C/G)TCACT intron-variant
rs4783950 -- 56,677,646(+) TTCTT(C/T)CCCAG intron-variant
rs4784709 -- 56,677,463(+) GGCTC(A/T)GGTGG intron-variant
rs7500704 -- 56,678,218(+) ggcgt(C/T)gggtg downstream-variant-500B
rs8046181 -- 56,675,816(+) CGGGG(C/G)AGGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MT1IP Gene

Variant ID Type Subtype PubMed ID
nsv906720 CNV Loss 21882294
dgv480n67 CNV Loss 20364138

Relevant External Links for MT1IP Gene

HapMap Linkage Disequilibrium report
MT1IP

Disorders for MT1IP Gene

No disorders were found for MT1IP Gene.

No data available for UniProtKB/Swiss-Prot for MT1IP Gene

Publications for MT1IP Gene

  1. Human metallothionein genes: structure of the functional locus at 16q13. (PMID: 2286373) West A.K. … Richards R.I. (Genomics 1990) 2 3
  2. Human metallothionein genes are clustered on chromosome 16. (PMID: 6089206) Karin M. … Shows T.B. (Proc. Natl. Acad. Sci. U.S.A. 1984) 2 3
  3. Characterisation of six additional human metallothionein genes. (PMID: 8049263) Stennard F.A. … West A.K. (Biochim. Biophys. Acta 1994) 2 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for MT1IP Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MT1IP
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MT1IP
    • Block miRNA regulation of MT1IP using miScript Target Protectors

    Sources for MT1IP Gene

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