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Aliases for MT1IP Gene

Subcategory (RNA class) for MT1IP Gene

lncRNA

Aliases for MT1IP Gene

  • Metallothionein 1I, Pseudogene 2 3
  • Metallothionein 1I (Pseudogene) 3
  • Metallothionein 1I 2
  • Metallothionein E 3
  • RP11-249C24.12 5
  • MT1I 3
  • MT1 3
  • MTE 3

External Ids for MT1IP Gene

ORGUL Members for MT1IP Gene

Previous HGNC Symbols for MT1IP Gene

  • MT1
  • MT1I

Previous GeneCards Identifiers for MT1IP Gene

  • GC16U900670
  • GC16P055268
  • GC16P055269
  • GC16P056709

Summaries for MT1IP Gene

GeneCards Summary for MT1IP Gene

MT1IP (Metallothionein 1I, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT1IP Gene

Genomics for MT1IP Gene

Regulatory Elements for MT1IP Gene

Enhancers for MT1IP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MT1IP on UCSC Golden Path with GeneCards custom track

Promoters for MT1IP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MT1IP on UCSC Golden Path with GeneCards custom track

Genomic Location for MT1IP Gene

Chromosome:
16
Start:
56,676,116 bp from pter
End:
56,677,877 bp from pter
Size:
1,762 bases
Orientation:
Plus strand

Genomic View for MT1IP Gene

Genes around MT1IP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MT1IP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MT1IP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MT1IP Gene

Proteins for MT1IP Gene

  • Protein details for MT1IP Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WTG2
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A087WTG2

    Protein attributes for MT1IP Gene

    Size:
    46 amino acids
    Molecular mass:
    4659 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MT1IP Gene

Proteomics data for MT1IP Gene at MOPED

Post-translational modifications for MT1IP Gene

No Post-translational modifications

Other Protein References for MT1IP Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for MT1IP Gene

Domains & Families for MT1IP Gene

Gene Families for MT1IP Gene

Protein Domains for MT1IP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MT1IP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT1IP: view

No data available for UniProtKB/Swiss-Prot for MT1IP Gene

Function for MT1IP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT1IP Gene

Localization for MT1IP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MT1IP Gene

Pathways & Interactions for MT1IP Gene

SuperPathways for MT1IP Gene

No Data Available

Interacting Proteins for MT1IP Gene

Gene Ontology (GO) - Biological Process for MT1IP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MT1IP Gene

Drugs & Compounds for MT1IP Gene

No Compound Related Data Available

Transcripts for MT1IP Gene

mRNA/cDNA for MT1IP Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT1IP Gene

No ASD Table

Relevant External Links for MT1IP Gene

GeneLoc Exon Structure for
MT1IP
ECgene alternative splicing isoforms for
MT1IP

Expression for MT1IP Gene

SOURCE GeneReport for Unigene cluster for MT1IP Gene Hs.434199

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MT1IP Gene

Orthologs for MT1IP Gene

Evolution for MT1IP Gene

ENSEMBL:
Gene Tree for MT1IP (if available)
TreeFam:
Gene Tree for MT1IP (if available)

No data available for Orthologs for MT1IP Gene

Paralogs for MT1IP Gene

No data available for Paralogs for MT1IP Gene

Variants for MT1IP Gene

Sequence variations from dbSNP and Humsavar for MT1IP Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs61176346 -- 56,675,495(+) CCGGA(A/G)AACTA upstream-variant-2KB
rs4783949 -- 56,677,497(+) AGGCT(C/G)TCACT intron-variant
rs4783950 -- 56,677,646(+) TTCTT(C/T)CCCAG intron-variant
rs61496999 -- 56,674,548(+) TTACA(A/G)AGAAA upstream-variant-2KB
rs4784709 -- 56,677,463(+) GGCTC(A/T)GGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MT1IP Gene

Variant ID Type Subtype PubMed ID
nsv906720 CNV Loss 21882294
dgv480n67 CNV Loss 20364138

Relevant External Links for MT1IP Gene

HapMap Linkage Disequilibrium report
MT1IP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MT1IP Gene

Disorders for MT1IP Gene

Relevant External Links for MT1IP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MT1IP

No disorders were found for MT1IP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MT1IP Gene

Publications for MT1IP Gene

  1. Characterisation of six additional human metallothionein genes. (PMID: 8049263) Stennard F.A. … West A.K. (Biochim. Biophys. Acta 1994) 2 3 67
  2. Human metallothionein genes: structure of the functional locus at 16q13. (PMID: 2286373) West A.K. … Richards R.I. (Genomics 1990) 2 3
  3. Human metallothionein genes are clustered on chromosome 16. (PMID: 6089206) Karin M. … Shows T.B. (Proc. Natl. Acad. Sci. U.S.A. 1984) 2 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for MT1IP Gene

Sources for MT1IP Gene

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