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Aliases for MT1IP Gene

Subcategory (RNA class) for MT1IP Gene

lncRNA

Aliases for MT1IP Gene

  • Metallothionein 1I, Pseudogene 2 3
  • Metallothionein 1I 2
  • Metallothionein E 3
  • RP11-249C24.12 5
  • MT1I 3
  • MT1 3
  • MTE 3

External Ids for MT1IP Gene

ORGUL Members for MT1IP Gene

Previous HGNC Symbols for MT1IP Gene

  • MT1
  • MT1I

Previous GeneCards Identifiers for MT1IP Gene

  • GC16U900670
  • GC16P055268
  • GC16P055269
  • GC16P056709

Summaries for MT1IP Gene

GeneCards Summary for MT1IP Gene

MT1IP (Metallothionein 1I, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT1IP Gene

Genomics for MT1IP Gene

Regulatory Elements for MT1IP Gene

Enhancers for MT1IP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F056679 0.5 Ensembl 0.8 +3.8 3785 0.2 CEBPA SCRT2 CEBPB MT1IP MT1X
GH16F056675 0.5 ENCODE 0.8 -0.3 -305 1.0 ZNF692 POLR2A NRF1 THRB MT1X MT1IP MT1H
GH16F056681 1 ENCODE 0.4 +6.3 6304 3.2 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ETS1 YY1 ZNF121 ZNF143 MT1X CES1P2 MT1IP
GH16F056680 0.4 ENCODE 0.8 +4.0 3958 0.1 SCRT2 CEBPB MT1IP MT1X
GH16F056677 0.4 ENCODE 0.8 +1.8 1750 0.9 ZNF7 MT1X MT1IP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MT1IP on UCSC Golden Path with GeneCards custom track

Promoters for MT1IP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001801716 184 200

Genomic Location for MT1IP Gene

Chromosome:
16
Start:
56,676,116 bp from pter
End:
56,677,877 bp from pter
Size:
1,762 bases
Orientation:
Plus strand

Genomic View for MT1IP Gene

Genes around MT1IP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MT1IP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MT1IP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MT1IP Gene

Proteins for MT1IP Gene

  • Protein details for MT1IP Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WTG2
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A087WTG2

    Protein attributes for MT1IP Gene

    Size:
    46 amino acids
    Molecular mass:
    4659 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MT1IP Gene

Post-translational modifications for MT1IP Gene

No Post-translational modifications

Other Protein References for MT1IP Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for MT1IP Gene

Domains & Families for MT1IP Gene

Gene Families for MT1IP Gene

Protein Domains for MT1IP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MT1IP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT1IP: view

No data available for UniProtKB/Swiss-Prot for MT1IP Gene

Function for MT1IP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT1IP Gene

Localization for MT1IP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MT1IP Gene

Pathways & Interactions for MT1IP Gene

SuperPathways for MT1IP Gene

No Data Available

Interacting Proteins for MT1IP Gene

Gene Ontology (GO) - Biological Process for MT1IP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MT1IP Gene

Transcripts for MT1IP Gene

mRNA/cDNA for MT1IP Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT1IP Gene

No ASD Table

Relevant External Links for MT1IP Gene

GeneLoc Exon Structure for
MT1IP
ECgene alternative splicing isoforms for
MT1IP

Expression for MT1IP Gene

NURSA nuclear receptor signaling pathways regulating expression of MT1IP Gene:

MT1IP

SOURCE GeneReport for Unigene cluster for MT1IP Gene:

Hs.434199
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MT1IP Gene

Orthologs for MT1IP Gene

Evolution for MT1IP Gene

ENSEMBL:
Gene Tree for MT1IP (if available)
TreeFam:
Gene Tree for MT1IP (if available)

No data available for Orthologs for MT1IP Gene

Paralogs for MT1IP Gene

No data available for Paralogs for MT1IP Gene

Variants for MT1IP Gene

Sequence variations from dbSNP and Humsavar for MT1IP Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs112557117 -- 56,675,244(+) GTGGT(A/C)TCTTC upstream-variant-2KB
rs112597272 -- 56,678,138(+) AAGGC(C/G)AGAAG downstream-variant-500B
rs112714354 -- 56,678,217(+) TGGCG(C/T)CGGGT downstream-variant-500B
rs113036126 -- 56,677,427(+) CCCAG(G/T)CACTG intron-variant
rs113398271 -- 56,675,669(+) GGGAG(-/AAGCAA)AAGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MT1IP Gene

Variant ID Type Subtype PubMed ID
dgv2989n100 CNV gain 25217958
dgv524e214 CNV gain 21293372
nsv1058153 CNV gain 25217958

Relevant External Links for MT1IP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MT1IP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MT1IP Gene

Disorders for MT1IP Gene

Relevant External Links for MT1IP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MT1IP

No disorders were found for MT1IP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MT1IP Gene

Publications for MT1IP Gene

  1. Characterisation of six additional human metallothionein genes. (PMID: 8049263) Stennard F.A. … West A.K. (Biochim. Biophys. Acta 1994) 2 3 64
  2. Human metallothionein genes: structure of the functional locus at 16q13. (PMID: 2286373) West A.K. … Richards R.I. (Genomics 1990) 2 3 64
  3. Human metallothionein genes are clustered on chromosome 16. (PMID: 6089206) Karin M. … Shows T.B. (Proc. Natl. Acad. Sci. U.S.A. 1984) 2 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MT1IP Gene

Sources for MT1IP Gene

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