Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MT-TS2 Gene

Subcategory (RNA class) for MT-TS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MT-TS2 Gene

  • Mitochondrially Encoded TRNA Serine 2 (AGU/C) 2
  • TRNA Serine 2 (AGU/C) 2
  • TRNS2 3
  • MTTS2 3
  • TRNA 3

External Ids for MT-TS2 Gene

Previous HGNC Symbols for MT-TS2 Gene

  • MTTS2

Previous GeneCards Identifiers for MT-TS2 Gene

  • GC00U921613
  • GCMTP012209

Summaries for MT-TS2 Gene

GeneCards Summary for MT-TS2 Gene

MT-TS2 (Mitochondrially Encoded TRNA Serine 2 (AGU/C)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MT-TS2 include melas, mt-ts2-related and diphyllobothriasis. Among its related pathways are tRNA Aminoacylation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT-TS2 Gene

Genomics for MT-TS2 Gene

Genomic Location for MT-TS2 Gene

Chromosome:
MT
Start:
12,207 bp from pter
End:
12,265 bp from pter
Size:
59 bases
Orientation:
Plus strand

Genomic View for MT-TS2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for MT-TS2 Gene

No data available for Regulatory Elements for MT-TS2 Gene

Proteins for MT-TS2 Gene

Post-translational modifications for MT-TS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MT-TS2 Gene

Domains & Families for MT-TS2 Gene

Gene Families for MT-TS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT-TS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MT-TS2 Gene

Function for MT-TS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT-TS2 Gene

Localization for MT-TS2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MT-TS2 Gene COMPARTMENTS Subcellular localization image for MT-TS2 gene
Compartment Confidence
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MT-TS2 Gene

Pathways & Interactions for MT-TS2 Gene

SuperPathways for MT-TS2 Gene

Superpath Contained pathways
1 tRNA Aminoacylation
genes like me logo Genes that share pathways with MT-TS2: view

Pathways by source for MT-TS2 Gene

1 KEGG pathway for MT-TS2 Gene

Interacting Proteins for MT-TS2 Gene

Gene Ontology (GO) - Biological Process for MT-TS2 Gene

None

No data available for SIGNOR curated interactions for MT-TS2 Gene

Drugs & Compounds for MT-TS2 Gene

No Compound Related Data Available

Transcripts for MT-TS2 Gene

mRNA/cDNA for MT-TS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT-TS2 Gene

No ASD Table

Relevant External Links for MT-TS2 Gene

GeneLoc Exon Structure for
MT-TS2
ECgene alternative splicing isoforms for
MT-TS2

Expression for MT-TS2 Gene

mRNA expression in normal human tissues for MT-TS2 Gene

genes like me logo Genes that share expression patterns with MT-TS2: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MT-TS2 Gene

Orthologs for MT-TS2 Gene

Evolution for MT-TS2 Gene

ENSEMBL:
Gene Tree for MT-TS2 (if available)
TreeFam:
Gene Tree for MT-TS2 (if available)

No data available for Orthologs for MT-TS2 Gene

Paralogs for MT-TS2 Gene

No data available for Paralogs for MT-TS2 Gene

Variants for MT-TS2 Gene

Relevant External Links for MT-TS2 Gene

HapMap Linkage Disequilibrium report
MT-TS2
Human Gene Mutation Database (HGMD)
MT-TS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MT-TS2 Gene

Disorders for MT-TS2 Gene

MalaCards: The human disease database

(7) MalaCards diseases for MT-TS2 Gene - From: ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
melas, mt-ts2-related
  • melas, mtts2-related
diphyllobothriasis
  • fish tapeworm
usher syndrome, type 3a
  • usher syndrome type 3
mitochondrial disorders
  • mitochondrial encephalomyopathies
merrf syndrome
  • myoclonus epilepsy and ragged red fibers
- elite association

Relevant External Links for MT-TS2

Genetic Association Database (GAD)
MT-TS2
genes like me logo Genes that share disorders with MT-TS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MT-TS2 Gene

Publications for MT-TS2 Gene

  1. Mutations in the mitochondrial tRNA Ser(AGY) gene are associated with deafness, retinal degeneration, myopathy and epilepsy. (PMID: 22378285) Tuppen H.A. … McFarland R. (Eur. J. Hum. Genet. 2012) 67
  2. MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease. (PMID: 19758471) Bhardwaj A. … Tiwari S. (BMC Bioinformatics 2009) 67
  3. Type 2 diabetes is associated with a common mitochondrial variant: evidence from a population-based case-control study. (PMID: 12045211) Poulton J. … Wareham N.J. (Hum. Mol. Genet. 2002) 67
  4. Mitochondrial Disorders Overview (PMID: 20301403) Pagon R.A. … Stephens K. ( 1993) 67
  5. MELAS (PMID: 20301411) Pagon R.A. … Stephens K. ( 1993) 67

Products for MT-TS2 Gene

Sources for MT-TS2 Gene

Back to Top

Content