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Aliases for MT-TS2 Gene

Subcategory (RNA class) for MT-TS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MT-TS2 Gene

  • Mitochondrially Encoded TRNA Serine 2 (AGU/C) 2 5
  • TRNA Serine 2 (AGU/C) 2
  • TRNS2 3
  • MTTS2 3
  • TRNA 3

External Ids for MT-TS2 Gene

Previous HGNC Symbols for MT-TS2 Gene

  • MTTS2

Previous GeneCards Identifiers for MT-TS2 Gene

  • GC00U921613
  • GCMTP012209

Summaries for MT-TS2 Gene

GeneCards Summary for MT-TS2 Gene

MT-TS2 (Mitochondrially Encoded TRNA Serine 2 (AGU/C)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MT-TS2 include Usher Syndrome and Retinitis Pigmentosa-Deafness Syndrome. Among its related pathways are tRNA Aminoacylation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT-TS2 Gene

Genomics for MT-TS2 Gene

Genomic Location for MT-TS2 Gene

12,207 bp from pter
12,265 bp from pter
59 bases
Plus strand

Genomic View for MT-TS2 Gene

Genes around MT-TS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for MT-TS2 Gene

No data available for Regulatory Elements for MT-TS2 Gene

Proteins for MT-TS2 Gene

Post-translational modifications for MT-TS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MT-TS2 Gene

Domains & Families for MT-TS2 Gene

Gene Families for MT-TS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT-TS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MT-TS2 Gene

Function for MT-TS2 Gene

Human Phenotype Ontology for MT-TS2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT-TS2 Gene

Localization for MT-TS2 Gene

Subcellular locations from

Jensen Localization Image for MT-TS2 Gene COMPARTMENTS Subcellular localization image for MT-TS2 gene
Compartment Confidence
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MT-TS2 Gene

Pathways & Interactions for MT-TS2 Gene

SuperPathways for MT-TS2 Gene

SuperPathway Contained pathways
1 tRNA Aminoacylation
genes like me logo Genes that share pathways with MT-TS2: view

Pathways by source for MT-TS2 Gene

1 KEGG pathway for MT-TS2 Gene

Interacting Proteins for MT-TS2 Gene

Gene Ontology (GO) - Biological Process for MT-TS2 Gene


No data available for SIGNOR curated interactions for MT-TS2 Gene

Transcripts for MT-TS2 Gene

mRNA/cDNA for MT-TS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT-TS2 Gene

No ASD Table

Relevant External Links for MT-TS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MT-TS2 Gene

mRNA expression in normal human tissues for MT-TS2 Gene

genes like me logo Genes that share expression patterns with MT-TS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MT-TS2 Gene

Orthologs for MT-TS2 Gene

Evolution for MT-TS2 Gene

Gene Tree for MT-TS2 (if available)
Gene Tree for MT-TS2 (if available)

No data available for Orthologs for MT-TS2 Gene

Paralogs for MT-TS2 Gene

No data available for Paralogs for MT-TS2 Gene

Variants for MT-TS2 Gene

Relevant External Links for MT-TS2 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MT-TS2 Gene

Disorders for MT-TS2 Gene

MalaCards: The human disease database

(9) MalaCards diseases for MT-TS2 Gene - From: ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
usher syndrome
  • deafness-retinitis pigmentosa syndrome
retinitis pigmentosa-deafness syndrome
  • usher syndrome
usher syndrome, type 3a
  • usher syndrome type 3
melas, mt-ts2-related
  • melas, mtts2-related
merrf/melas overlap syndrome
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for MT-TS2

Genetic Association Database (GAD)
genes like me logo Genes that share disorders with MT-TS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MT-TS2 Gene

Publications for MT-TS2 Gene

  1. Type 2 diabetes is associated with a common mitochondrial variant: evidence from a population-based case-control study. (PMID: 12045211) Poulton J. … Wareham N.J. (Hum. Mol. Genet. 2002) 3 46 64
  2. Mutations in the mitochondrial tRNA Ser(AGY) gene are associated with deafness, retinal degeneration, myopathy and epilepsy. (PMID: 22378285) Tuppen H.A. … McFarland R. (Eur. J. Hum. Genet. 2012) 3 64
  3. MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease. (PMID: 19758471) Bhardwaj A. … Tiwari S. (BMC Bioinformatics 2009) 3 64
  4. Mitochondrial Disorders Overview (PMID: 20301403) Pagon R.A. … Stephens K. ( 1993) 3 64
  5. MELAS (PMID: 20301411) Pagon R.A. … Stephens K. ( 1993) 3 64

Products for MT-TS2 Gene

Sources for MT-TS2 Gene

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