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mitochondrially encoded tRNA serine 1 (UCN)(Previous name: tRNA serine 1 (UCN) )
(Previous symbol: MTTS1)
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Aliases
for MT-TS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): Mt_tRNA
Quality score for this RNA gene is 3
| Aliases |
|---|
| Mitochondrially Encoded TRNA Serine 1 (UCN)1 | | MTTS11 2 | | TRNS11 2 | | TRNA Serine 1 (UCN)1 | | TRNA1 |
Export aliases for MT-TS1 gene to outside databasesPrevious GC identifer: GC00U921612 |
Summaries
for MT-TS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for MT-TS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for MT-TS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MT-TS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MT-TS1 |
Genomic Location:
Chromosome:MT
Ensembl cytogenetic band: MT HGNC chromosome: mitochondriaGeneLoc information about chromosome MT GeneLoc Exon Structure GeneLoc location for GCMTM007447: view genomic region
(about GC identifiers)
Start:
|
7,446 bp from pter |
End:
|
7,514 bp from pter |
Size:
|
69 bases |
Orientation:
|
minus strand |
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Proteins
for MT-TS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB: --
|
Protein
Domains /
Families
for MT-TS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for MT-TS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for MT-TS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table 
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | tRNA Aminoacylation | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Kegg Pathway (Kegg details for MT-TS1):
MT-TS1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MT-TS1
|
Drugs & Compounds
for MT-TS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MT-TS1
Search CenterWatch for drugs/clinical trials and news about MT-TS1
|
Transcripts
for MT-TS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000387416(Mt_tRNA)
GeneLoc Exon Structure
|
Expression
for MT-TS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for MT-TS1:none
MT-TS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for MT-TS1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MT-TS1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MT-TS1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MT-TS1 |
Orthologs
for MT-TS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for MT-TS1 (if available)
TreeFam Gene Tree for MT-TS1 (if available) |
Paralogs
for MT-TS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for MT-TS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
Human Gene Mutation Database (HGMD): MT-TS1
| SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for MT-TS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
MT-TS1 for disorders About GeneDecksing
OMIM gene information: 590080
OMIM disorders: --
8  diseases for MT-TS1: About MalaCardsnonsyndromic hearing loss and deafness, mitochondrial nonsyndromic hearing loss and deafness monomelic amyotrophy hearing loss
sensorineural hearing loss melas syndrome gastric cancer myopathy
GeneTests: MT-TS1
Nonsyndromic Hearing Loss and Deafness, Mitochondrial
Genetic Association Database (GAD): MT-TS1
Export disorders for MT-TS1 gene to outside databases
|
Publications
for MT-TS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for MT-TS1 gene, integrated from 9 sources (see all 28):
(articles sorted by number of sources associating them with MT-TS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Sequence variations of mitochondrial DNA and individual sensitivity to the ototoxic effect of cisplatin. (PubMed id 12820379)1, 4 Peters U....Lamprecht-Dinnesen A. (2003)
- Fatal neonatal lactic acidosis caused by a novel de no vo mitochondrial G7453A tRNA-Serine ((UCN)) mutation. (PubMed id 22453297)1 Gotz A....Suomalainen A. (2012)
- The search of a genetic basis for noise-induced heari ng loss (NIHL). (PubMed id 20812880)1 Abreu-Silva R.S....Mingroni-Netto R.C. (2010)
- Genotyping with a 198 mutation arrayed primer extensi on array for hereditary hearing loss: assessment of its diagnostic value for me dical practice. (PubMed id 20668687)1 Rodriguez-Paris J....Schrijver I. (2010)
- Extensive screening system using suspension array tec hnology to detect mitochondrial DNA point mutations. (PubMed id 20064630)1 Nishigaki Y....Tanaka M. (2010)
- Role of the mitochondrial mutations, m.827A>G and the novel m.7462C>T, in the origin of hearing loss. (PubMed id 20722495)1 Uehara D.T....Mingroni-Netto R.C. (2010)
- Somatic mutations in mitochondrial genome and their p otential roles in the progression of human gastric cancer. (PubMed id 19527772)1 Hung W.Y....Lee H.C. (2010)
- Comprehensive molecular etiology analysis of nonsyndr omic hearing impairment from typical areas in China. (PubMed id 19744334)1 Yuan Y....Dai P. (2009)
- Screening of the general Polish population for deafness-associated mutations in mitochondrial 12S rRNA and tRNA Ser(UCN) genes. (PubMed id 19371214)1 Rydzanicz M....Szyfter K. (2009)
- Splice variant IVS2-2A>G in the SLC26A5 (Prestin) gene in five Estonian families with hearing loss. (PubMed id 19027966)1 Teek R....Ounap K. (2009)
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External Searches for MT-TS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing MT-TS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing MT-TS1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MT-TS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for MT-TS1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for MT-TS1 gene:
Search GeneIP for patents involving MT-TS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for MT-TS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MT-TS1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MT-TS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MT-TS1 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MT-TS1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MT-TS1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MT-TS1 |
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| | | | Search Tocris compounds for MT-TS1 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for MT-TS1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MT-TS1 |
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