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Aliases for MT-TN Gene

Subcategory (RNA class) for MT-TN Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MT-TN Gene

  • Mitochondrially Encoded TRNA Asparagine 2 5
  • TRNA Asparagine 2
  • TRNA 3
  • TRNN 3
  • MTTN 3

External Ids for MT-TN Gene

Previous HGNC Symbols for MT-TN Gene

  • MTTN

Previous GeneCards Identifiers for MT-TN Gene

  • GC00U921608

Summaries for MT-TN Gene

GeneCards Summary for MT-TN Gene

MT-TN (Mitochondrially Encoded TRNA Asparagine) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MT-TN include Maternally-Inherited Progressive External Ophthalmoplegia and Mitochondrial Complex Iv Deficiency. Among its related pathways are tRNA Aminoacylation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT-TN Gene

Genomics for MT-TN Gene

Genomic Location for MT-TN Gene

Chromosome:
MT
Start:
5,657 bp from pter
End:
5,729 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for MT-TN Gene

Genes around MT-TN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for MT-TN Gene

No data available for Regulatory Elements for MT-TN Gene

Proteins for MT-TN Gene

Post-translational modifications for MT-TN Gene

No Post-translational modifications

No data available for DME Specific Peptides for MT-TN Gene

Domains & Families for MT-TN Gene

Gene Families for MT-TN Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT-TN: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MT-TN Gene

Function for MT-TN Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT-TN Gene

Localization for MT-TN Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MT-TN Gene COMPARTMENTS Subcellular localization image for MT-TN gene
Compartment Confidence
chloroplast 2
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MT-TN Gene

Pathways & Interactions for MT-TN Gene

SuperPathways for MT-TN Gene

Superpath Contained pathways
1 tRNA Aminoacylation
genes like me logo Genes that share pathways with MT-TN: view

Pathways by source for MT-TN Gene

1 KEGG pathway for MT-TN Gene

Interacting Proteins for MT-TN Gene

Gene Ontology (GO) - Biological Process for MT-TN Gene

None

No data available for SIGNOR curated interactions for MT-TN Gene

Drugs & Compounds for MT-TN Gene

No Compound Related Data Available

Transcripts for MT-TN Gene

mRNA/cDNA for MT-TN Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT-TN Gene

No ASD Table

Relevant External Links for MT-TN Gene

GeneLoc Exon Structure for
MT-TN
ECgene alternative splicing isoforms for
MT-TN

Expression for MT-TN Gene

mRNA expression in normal human tissues for MT-TN Gene

genes like me logo Genes that share expression patterns with MT-TN: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MT-TN Gene

Orthologs for MT-TN Gene

Evolution for MT-TN Gene

ENSEMBL:
Gene Tree for MT-TN (if available)
TreeFam:
Gene Tree for MT-TN (if available)

No data available for Orthologs for MT-TN Gene

Paralogs for MT-TN Gene

No data available for Paralogs for MT-TN Gene

Variants for MT-TN Gene

Relevant External Links for MT-TN Gene

Human Gene Mutation Database (HGMD)
MT-TN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MT-TN Gene

Disorders for MT-TN Gene

MalaCards: The human disease database

(3) MalaCards diseases for MT-TN Gene - From: ClinVar and Orphanet

Disorder Aliases PubMed IDs
maternally-inherited progressive external ophthalmoplegia
  • maternally-inherited cpeo
mitochondrial complex iv deficiency
  • cytochrome-c oxidase deficiency disease
mitochondrial complex i deficiency
  • mitochondrial complex 1 deficiency
- elite association - COSMIC cancer census association via MalaCards
Search MT-TN in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with MT-TN: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for MT-TN Gene

Publications for MT-TN Gene

  1. MtSNPscore: a combined evidence approach for assessing cumulative impact of mitochondrial variations in disease. (PMID: 19758471) Bhardwaj A. … Tiwari S. (BMC Bioinformatics 2009) 3 67
  2. Comprehensive analysis of common mitochondrial DNA variants and colorectal cancer risk. (PMID: 19050702) Webb E. … Houlston R.S. (Br. J. Cancer 2008) 3

Products for MT-TN Gene

Sources for MT-TN Gene

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