Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MT-RNR1 Gene

Subcategory (RNA class) for MT-RNR1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MT-RNR1 Gene

  • Mitochondrially Encoded 12S RNA 2
  • 12S RNA 2
  • S-RRNA 3
  • MTRNR1 3
  • RNR1 3

External Ids for MT-RNR1 Gene

Previous HGNC Symbols for MT-RNR1 Gene

  • MTRNR1

Previous GeneCards Identifiers for MT-RNR1 Gene

  • GC00U921594

Summaries for MT-RNR1 Gene

GeneCards Summary for MT-RNR1 Gene

MT-RNR1 (Mitochondrially Encoded 12S RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MT-RNR1 include mt-rnr1-related hearing loss and deafness and mitochondrial non-syndromic sensorineural deafness with susceptibility to aminoglycoside exposure. Among its related pathways are Ribosome biogenesis in eukaryotes and Viral mRNA Translation.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT-RNR1 Gene

Genomics for MT-RNR1 Gene

Genomic Location for MT-RNR1 Gene

Chromosome:
MT
Start:
648 bp from pter
End:
1,601 bp from pter
Size:
954 bases
Orientation:
Plus strand

Genomic View for MT-RNR1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for MT-RNR1 Gene

No data available for Regulatory Elements for MT-RNR1 Gene

Proteins for MT-RNR1 Gene

Post-translational modifications for MT-RNR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MT-RNR1 Gene

Domains & Families for MT-RNR1 Gene

Gene Families for MT-RNR1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MT-RNR1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MT-RNR1 Gene

Function for MT-RNR1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MT-RNR1 Gene

Localization for MT-RNR1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MT-RNR1 Gene COMPARTMENTS Subcellular localization image for MT-RNR1 gene
Compartment Confidence
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MT-RNR1 Gene

Pathways & Interactions for MT-RNR1 Gene

genes like me logo Genes that share pathways with MT-RNR1: view

Pathways by source for MT-RNR1 Gene

2 KEGG pathways for MT-RNR1 Gene
1 GeneGo (Thomson Reuters) pathway for MT-RNR1 Gene

Interacting Proteins for MT-RNR1 Gene

Gene Ontology (GO) - Biological Process for MT-RNR1 Gene

None

No data available for SIGNOR curated interactions for MT-RNR1 Gene

Drugs & Compounds for MT-RNR1 Gene

(1) Drugs for MT-RNR1 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
aminoglycoside antibacterials Pharma 0
genes like me logo Genes that share compounds with MT-RNR1: view

Transcripts for MT-RNR1 Gene

mRNA/cDNA for MT-RNR1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT-RNR1 Gene

No ASD Table

Relevant External Links for MT-RNR1 Gene

GeneLoc Exon Structure for
MT-RNR1
ECgene alternative splicing isoforms for
MT-RNR1

Expression for MT-RNR1 Gene

mRNA expression in normal human tissues for MT-RNR1 Gene

mRNA differential expression in normal tissues according to GTEx for MT-RNR1 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x4.7) and Brain - Amygdala (x4.1).
genes like me logo Genes that share expression patterns with MT-RNR1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MT-RNR1 Gene

Orthologs for MT-RNR1 Gene

Evolution for MT-RNR1 Gene

ENSEMBL:
Gene Tree for MT-RNR1 (if available)
TreeFam:
Gene Tree for MT-RNR1 (if available)

No data available for Orthologs for MT-RNR1 Gene

Paralogs for MT-RNR1 Gene

No data available for Paralogs for MT-RNR1 Gene

Variants for MT-RNR1 Gene

Relevant External Links for MT-RNR1 Gene

HapMap Linkage Disequilibrium report
MT-RNR1
Human Gene Mutation Database (HGMD)
MT-RNR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MT-RNR1 Gene

Disorders for MT-RNR1 Gene

MalaCards: The human disease database

(17) MalaCards diseases for MT-RNR1 Gene - From: ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
mt-rnr1-related hearing loss and deafness
  • aminoglycoside ototoxicity
mitochondrial non-syndromic sensorineural deafness with susceptibility to aminoglycoside exposure
  • mitochondrial isolated neurosensory deafness with susceptibility to aminoglycoside exposure
restrictive cardiomyopathy
  • primary restrictive cardiomyopathy
familial restrictive cardiomyopathy
  • cardiomyopathy, familial restrictive, 1
deafness, mitochondrial, modifier of
  • deafness, streptomycin-induced
- elite association

Relevant External Links for MT-RNR1

Genetic Association Database (GAD)
MT-RNR1
genes like me logo Genes that share disorders with MT-RNR1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MT-RNR1 Gene

Publications for MT-RNR1 Gene

  1. Extensive and rapid screening for major mitochondrial DNA point mutations in patients with hereditary hearing loss. (PMID: 20111055) Kato T. … Tanaka M. (J. Hum. Genet. 2010) 23 67
  2. Investigation of mitochondrial sequence variants associated with aminoglycoside-induced ototoxicity in South African TB patients on aminoglycosides. (PMID: 20171168) Human H. … Bardien S. (Biochem. Biophys. Res. Commun. 2010) 23 67
  3. mip1 containing mutations associated with mitochondrial disease causes mutagenesis and depletion of mtDNA in Saccharomyces cerevisiae. (PMID: 20185557) Stumpf J.D. … Copeland W.C. (Hum. Mol. Genet. 2010) 23 67
  4. Study of modifiers factors associated to mitochondrial mutations in individuals with hearing impairment. (PMID: 19338775) de Moraes V.C. … Sartorato E.L. (Biochem. Biophys. Res. Commun. 2009) 23 67
  5. A rapid method for detection of five known mutations associated with aminoglycoside-induced deafness. (PMID: 19144107) Bardien S. … de Jong G. (BMC Med. Genet. 2009) 23 67

Products for MT-RNR1 Gene

Sources for MT-RNR1 Gene

Back to Top

Content