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Aliases for MT-ND5 Gene

Aliases for MT-ND5 Gene

  • Mitochondrially Encoded NADH Dehydrogenase 5 2
  • NADH Dehydrogenase Subunit 5 3 4
  • EC 1.6.5.3 4 63
  • MTND5 3 4
  • ND5 3 4
  • NADH Dehydrogenase, Subunit 5 (Complex I) 3
  • NADH-Ubiquinone Oxidoreductase Chain 5 2
  • Complex I ND5 Subunit 2
  • NADH Dehydrogenase 5 2
  • NADH5 4

External Ids for MT-ND5 Gene

Previous HGNC Symbols for MT-ND5 Gene

  • MTND5

Previous GeneCards Identifiers for MT-ND5 Gene

  • GC00U921592

Summaries for MT-ND5 Gene

GeneCards Summary for MT-ND5 Gene

MT-ND5 (Mitochondrially Encoded NADH Dehydrogenase 5) is a Protein Coding gene. Diseases associated with MT-ND5 include melas, mt-nd5-related and merrf syndrome. Among its related pathways are Metabolism and Metabolism.

UniProtKB/Swiss-Prot for MT-ND5 Gene

  • Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MT-ND5 Gene

Genomics for MT-ND5 Gene

Genomic Location for MT-ND5 Gene

Start:
12,337 bp from pter
End:
14,148 bp from pter
Size:
1,812 bases
Orientation:
Plus strand

Genomic View for MT-ND5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:

RefSeq DNA sequence for MT-ND5 Gene

No data available for Regulatory Elements for MT-ND5 Gene

Proteins for MT-ND5 Gene

  • Protein details for MT-ND5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P03915-NU5M_HUMAN
    Recommended name:
    NADH-ubiquinone oxidoreductase chain 5
    Protein Accession:
    P03915
    Secondary Accessions:
    • Q34773
    • Q8WCY3

    Protein attributes for MT-ND5 Gene

    Size:
    603 amino acids
    Molecular mass:
    67027 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MT-ND5 Gene

Proteomics data for MT-ND5 Gene at MOPED

Post-translational modifications for MT-ND5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MT-ND5 Gene

ENSEMBL proteins:
Reactome Protein details:

Domains for MT-ND5 Gene

Gene Families for MT-ND5 Gene

HGNC:
  • comI :Mitochondrial respiratory chain complex / Complex I

Suggested Antigen Peptide Sequences for MT-ND5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P03915

UniProtKB/Swiss-Prot:

NU5M_HUMAN :
  • P03915
Family:
  • Belongs to the complex I subunit 5 family.
genes like me logo Genes that share domains with MT-ND5: view

Function for MT-ND5 Gene

Molecular function for MT-ND5 Gene

UniProtKB/Swiss-Prot CatalyticActivity: NADH + ubiquinone + 5 H(+)(In) = NAD(+) + ubiquinol + 4 H(+)(Out)
UniProtKB/Swiss-Prot Function: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).

Enzyme Numbers (IUBMB) for MT-ND5 Gene

Gene Ontology (GO) - Molecular Function for MT-ND5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008137 NADH dehydrogenase (ubiquinone) activity --
genes like me logo Genes that share ontologies with MT-ND5: view

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for MT-ND5 Gene

Localization for MT-ND5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MT-ND5 Gene

Mitochondrion inner membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MT-ND5 Gene COMPARTMENTS Subcellular localization image for MT-ND5 gene
Compartment Confidence
mitochondrion 5
plasma membrane 3
nucleus 2
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for MT-ND5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005743 mitochondrial inner membrane --
GO:0005747 mitochondrial respiratory chain complex I --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with MT-ND5: view

Pathways for MT-ND5 Gene

genes like me logo Genes that share pathways with MT-ND5: view

Gene Ontology (GO) - Biological Process for MT-ND5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006120 mitochondrial electron transport, NADH to ubiquinone --
GO:0022904 respiratory electron transport chain --
GO:0042773 ATP synthesis coupled electron transport --
GO:0044237 cellular metabolic process --
GO:0044281 small molecule metabolic process --
genes like me logo Genes that share ontologies with MT-ND5: view

Compounds for MT-ND5 Gene

(4) HMDB Compounds for MT-ND5 Gene

Compound Synonyms Cas Number PubMed IDs
NAD
  • 3-Carbamoyl-1-D-ribofuranosylpyridinium hydroxide 5'-ester with adenosine 5'-pyrophosphate
53-84-9
NADH
  • 1,4-Dihydronicotinamide adenine dinucleotide
58-68-4
Ubiquinol 8
  • ubiquinol-8
56275-39-9
Ubiquinone Q1
  • Coenzyme Q
727-81-1

(1) Drugbank Compounds for MT-ND5 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
NADH
  • beta-DPNH
606-68-8 target

(10) Novoseek inferred chemical compound relationships for MT-ND5 Gene

Compound -log(P) Hits PubMed IDs
nadh 78 24
valine 27.1 1
phosphoenolpyruvate 26.1 2
atp 21.5 3
methionine 13.9 2
genes like me logo Genes that share compounds with MT-ND5: view

Transcripts for MT-ND5 Gene

mRNA/cDNA for MT-ND5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MT-ND5 Gene

No ASD Table

Relevant External Links for MT-ND5 Gene

GeneLoc Exon Structure for
MT-ND5
ECgene alternative splicing isoforms for
MT-ND5

Expression for MT-ND5 Gene

mRNA expression in normal human tissues for MT-ND5 Gene

mRNA differential expression in normal tissues according to GTEx for MT-ND5 Gene

This gene is overexpressed in Heart - Left Ventricle (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MT-ND5 Gene

genes like me logo Genes that share expressions with MT-ND5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for MT-ND5 Gene

Orthologs for MT-ND5 Gene

This gene was present in the common ancestor of animals.

Orthologs for MT-ND5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MT-ND5 36
  • 93 (a)
OneToOne
ND5 35
  • 89.41 (n)
  • 92.75 (a)
cow
(Bos Taurus)
Mammalia ND5 35
  • 72.2 (n)
  • 71.06 (a)
ND5 36
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ND5 35
  • 68.99 (n)
  • 67.61 (a)
ND5 36
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia mt-Nd5 16
mt-Nd5 36
  • 63 (a)
OneToOne
ND5 35
  • 66.67 (n)
  • 65.45 (a)
oppossum
(Monodelphis domestica)
Mammalia ND5 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 59 (a)
OneToMany
ND5 36
  • 63 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia ND5 35
  • 67.25 (n)
  • 67.54 (a)
chicken
(Gallus gallus)
Aves MT-ND5 36
  • 56 (a)
OneToOne
ND5 35
  • 64.38 (n)
  • 58.27 (a)
lizard
(Anolis carolinensis)
Reptilia ND5 36
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ND5 35
  • 63.93 (n)
  • 59.69 (a)
zebrafish
(Danio rerio)
Actinopterygii mt-nd5 36
  • 53 (a)
OneToOne
ND5 35
  • 62.73 (n)
  • 60.19 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta ND5 35
  • 47.74 (n)
  • 39.8 (a)
fruit fly
(Drosophila melanogaster)
Insecta mt:ND5 36
  • 34 (a)
OneToOne
ND5 35
  • 46.76 (n)
  • 37.83 (a)
worm
(Caenorhabditis elegans)
Secernentea MTCE.35 36
  • 28 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToOne
Species with no ortholog for MT-ND5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MT-ND5 Gene

ENSEMBL:
Gene Tree for MT-ND5 (if available)
TreeFam:
Gene Tree for MT-ND5 (if available)

Paralogs for MT-ND5 Gene

Selected SIMAP similar genes for MT-ND5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MT-ND5: view

No data available for Paralogs for MT-ND5 Gene

Variants for MT-ND5 Gene

Sequence variations from dbSNP and Humsavar for MT-ND5 Gene

SNP ID Clin Chr MT pos Sequence Context AA Info Type MAF
VAR_004761 Leber hereditary optic neuropathy (LHON)
VAR_004762 Leber hereditary optic neuropathy (LHON)
VAR_008603 -
VAR_008864 -
VAR_008865 -

Relevant External Links for MT-ND5 Gene

HapMap Linkage Disequilibrium report
MT-ND5
Human Gene Mutation Database (HGMD)
MT-ND5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MT-ND5 Gene

Disorders for MT-ND5 Gene

UniProtKB/Swiss-Prot

NU5M_HUMAN
  • Leber hereditary optic neuropathy (LHON) [MIM:535000]: A maternally inherited disease resulting in acute or subacute loss of central vision, due to optic nerve dysfunction. Cardiac conduction defects and neurological defects have also been described in some patients. LHON results from primary mitochondrial DNA mutations affecting the respiratory chain complexes. {ECO:0000269 PubMed:16240359, ECO:0000269 PubMed:1732158, ECO:0000269 PubMed:1900003, ECO:0000269 PubMed:8213825}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Leigh syndrome (LS) [MIM:256000]: An early-onset progressive neurodegenerative disorder characterized by the presence of focal, bilateral lesions in one or more areas of the central nervous system including the brainstem, thalamus, basal ganglia, cerebellum and spinal cord. Clinical features depend on which areas of the central nervous system are involved and include subacute onset of psychomotor retardation, hypotonia, ataxia, weakness, vision loss, eye movement abnormalities, seizures, and dysphagia. {ECO:0000269 PubMed:11938446, ECO:0000269 PubMed:12796552, ECO:0000269 PubMed:17400793}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Mitochondrial complex I deficiency (MT-C1D) [MIM:252010]: A disorder of the mitochondrial respiratory chain that causes a wide range of clinical manifestations from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease. {ECO:0000269 PubMed:20818383}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Mitochondrial encephalomyopathy with lactic acidosis and stroke-like episodes syndrome (MELAS) [MIM:540000]: Genetically heterogeneous disorder, characterized by episodic vomiting, seizures, and recurrent cerebral insults resembling strokes and causing hemiparesis, hemianopsia, or cortical blindness. {ECO:0000269 PubMed:12509858, ECO:0000269 PubMed:15767514, ECO:0000269 PubMed:17400793, ECO:0000269 PubMed:9299505}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(14) Novoseek inferred disease relationships for MT-ND5 Gene

Disease -log(P) Hits PubMed IDs
leigh syndrome 82.4 5
mitochondrial diseases 79.7 2
lebers hereditary optic neuropathy 78.2 2
mitochondrial encephalomyopathies 74.9 2
acidosis lactic 66.3 2

Relevant External Links for MT-ND5

GeneTests
MT-ND5
GeneReviews
MT-ND5
Genetic Association Database (GAD)
MT-ND5
genes like me logo Genes that share disorders with MT-ND5: view

Publications for MT-ND5 Gene

  1. Mutations in the ND5 subunit of complex I of the mitochondrial DNA are a frequent cause of oxidative phosphorylation disease. (PMID: 17400793) Blok M.J. … Smeets H.J. (J. Med. Genet. 2007) 3 4 23 48
  2. Mitochondrial DNA polymorphisms and risk of Parkinson's disease in Spanish population. (PMID: 15975594) Huerta C. … Alvarez V. (J. Neurol. Sci. 2005) 3 23 48
  3. The role of the ND5 gene in LHON: characterization of a new, heteroplasmic LHON mutation. (PMID: 16240359) Mayorov V. … Brown M.D. (Ann. Neurol. 2005) 3 4 23
  4. Fatal manifestation of a de novo ND5 mutation: Insights into the pathogenetic mechanisms of mtDNA ND5 gene defects. (PMID: 17317336) Zhadanov S.I. … Schurr T.G. (Mitochondrion 2007) 3 23
  5. PGC-1alpha/beta upregulation is associated with improved oxidative phosphorylation in cells harboring nonsense mtDNA mutations. (PMID: 17341490) Srivastava S. … Moraes C.T. (Hum. Mol. Genet. 2007) 3 23

Products for MT-ND5 Gene

Sources for MT-ND5 Gene

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