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Aliases for MSX2P1 Gene

Aliases for MSX2P1 Gene

  • Msh Homeobox 2 Pseudogene 1 2 3 5
  • Msh Homeobox Homolog 2 Pseudogene 3
  • Msh Homeobox 2 Pseudogene 2
  • HSHPX5 3
  • MSX2P 3
  • HPX5 3

External Ids for MSX2P1 Gene

Previous HGNC Symbols for MSX2P1 Gene

  • MSX2P

Previous GeneCards Identifiers for MSX2P1 Gene

  • GC17P053592
  • GC17P056235
  • GC17P056236
  • GC17P056239
  • GC17P056245
  • GC17P056252

Summaries for MSX2P1 Gene

GeneCards Summary for MSX2P1 Gene

MSX2P1 (Msh Homeobox 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSX2P1 Gene

Genomics for MSX2P1 Gene

Regulatory Elements for MSX2P1 Gene

Enhancers for MSX2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G057660 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -492.8 -492839 7.5 ATF1 PKNOX1 ARNT CREB3L1 SIN3A TCF12 ZNF766 GATA2 ELK1 FOS VEZF1 SRSF1 COIL MSX2P1 OR4D1 MSI2 DYNLL2 GC17P057670 GC17P057653
GH17G058374 1.6 Ensembl ENCODE dbSUPER 9.4 +223.0 222998 10.4 HNRNPUL1 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 TRIM37 RAD51C RNF43 SUPT4H1 HSF5 LPO EPX MSX2P1 OR4D1 MTMR4
GH17G057832 1.5 Ensembl ENCODE dbSUPER 9.8 -323.7 -323693 2.3 HDGF PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 ZBTB7B ZNF207 ZNF143 FOS CCDC182 DYNLL2 AKAP1 SRSF1 CUEDC1 MSX2P1 OR4D1 ENSG00000265542 GC17M057806
GH17G058184 0.8 ENCODE 11.5 +27.6 27628 0.7 HDAC1 CREB3L1 ZNF133 ZMYM3 MAX FOSL1 ZNF766 ZNF316 SCRT2 FOS MSX2P1 OR4D1 MKS1 LPO SUPT4H1 GC17M057928 EPX
GH17G057834 0.9 ENCODE dbSUPER 9.8 -322.4 -322385 0.2 CTCF ESRRA ZNF687 NFIB SIN3A DPF2 ZBTB7B ZKSCAN1 ZNF579 NONO CCDC182 DYNLL2 AKAP1 SRSF1 CUEDC1 MSX2P1 OR4D1 ENSG00000265542 GC17M057806
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MSX2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MSX2P1 Gene

Chromosome:
17
Start:
58,156,959 bp from pter
End:
58,159,120 bp from pter
Size:
2,162 bases
Orientation:
Plus strand

Genomic View for MSX2P1 Gene

Genes around MSX2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSX2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSX2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSX2P1 Gene

Proteins for MSX2P1 Gene

Post-translational modifications for MSX2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSX2P1 Gene

Domains & Families for MSX2P1 Gene

Gene Families for MSX2P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MSX2P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSX2P1 Gene

Function for MSX2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSX2P1 Gene

Localization for MSX2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSX2P1 Gene

Pathways & Interactions for MSX2P1 Gene

SuperPathways for MSX2P1 Gene

No Data Available

Interacting Proteins for MSX2P1 Gene

Gene Ontology (GO) - Biological Process for MSX2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSX2P1 Gene

Drugs & Compounds for MSX2P1 Gene

No Compound Related Data Available

Transcripts for MSX2P1 Gene

mRNA/cDNA for MSX2P1 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSX2P1 Gene

Msh homeobox 2 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSX2P1 Gene

No ASD Table

Relevant External Links for MSX2P1 Gene

GeneLoc Exon Structure for
MSX2P1
ECgene alternative splicing isoforms for
MSX2P1

Expression for MSX2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MSX2P1 Gene

mRNA differential expression in normal tissues according to GTEx for MSX2P1 Gene

This gene is overexpressed in Whole Blood (x14.6), Spleen (x8.0), and Testis (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of MSX2P1 Gene:

MSX2P1

SOURCE GeneReport for Unigene cluster for MSX2P1 Gene:

Hs.381329
genes like me logo Genes that share expression patterns with MSX2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSX2P1 Gene

Orthologs for MSX2P1 Gene

Evolution for MSX2P1 Gene

ENSEMBL:
Gene Tree for MSX2P1 (if available)
TreeFam:
Gene Tree for MSX2P1 (if available)

No data available for Orthologs for MSX2P1 Gene

Paralogs for MSX2P1 Gene

No data available for Paralogs for MSX2P1 Gene

Variants for MSX2P1 Gene

Sequence variations from dbSNP and Humsavar for MSX2P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000652187 -- 58,157,020(+) AGGCA(C/T)GGCTT nc-transcript-variant
rs1000794425 -- 58,158,786(+) TATTC(G/T)TGAAC nc-transcript-variant
rs1000915551 -- 58,157,236(+) TACTG(C/T)TGCTG nc-transcript-variant
rs1001055668 -- 58,158,557(+) GTGAG(A/G)TAGAA nc-transcript-variant
rs1001564022 -- 58,156,254(+) TTTTT(C/T)TTTTT downstream-variant-500B, upstream-variant-2KB

Relevant External Links for MSX2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSX2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MSX2P1 Gene

Disorders for MSX2P1 Gene

Relevant External Links for MSX2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSX2P1

No disorders were found for MSX2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSX2P1 Gene

Publications for MSX2P1 Gene

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PMID: 7518789) Moretti P. … D'Andrea R. (Gene 1994) 2 3 64
  2. Comprehensive comparative homeobox gene annotation in human and mouse. (PMID: 26412852) Wilming L.G. … Harrow J.L. (Database (Oxford) 2015) 3 64

Products for MSX2P1 Gene

Sources for MSX2P1 Gene

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