Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MSX2P1 Gene

Aliases for MSX2P1 Gene

  • Msh Homeobox 2 Pseudogene 1 2 3 5
  • Msh Homeobox Homolog 2 Pseudogene 3
  • Msh Homeobox 2 Pseudogene 2
  • HSHPX5 3
  • MSX2P 3
  • HPX5 3

External Ids for MSX2P1 Gene

Previous HGNC Symbols for MSX2P1 Gene

  • MSX2P

Previous GeneCards Identifiers for MSX2P1 Gene

  • GC17P053592
  • GC17P056235
  • GC17P056236
  • GC17P056239
  • GC17P056245
  • GC17P056252

Summaries for MSX2P1 Gene

GeneCards Summary for MSX2P1 Gene

MSX2P1 (Msh Homeobox 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSX2P1 Gene

Genomics for MSX2P1 Gene

Regulatory Elements for MSX2P1 Gene

Promoters for MSX2P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MSX2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MSX2P1 Gene

Chromosome:
17
Start:
58,156,959 bp from pter
End:
58,159,120 bp from pter
Size:
2,162 bases
Orientation:
Plus strand

Genomic View for MSX2P1 Gene

Genes around MSX2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSX2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSX2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSX2P1 Gene

Proteins for MSX2P1 Gene

Post-translational modifications for MSX2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSX2P1 Gene

Domains & Families for MSX2P1 Gene

Gene Families for MSX2P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MSX2P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSX2P1 Gene

Function for MSX2P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSX2P1 Gene

Localization for MSX2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSX2P1 Gene

Pathways & Interactions for MSX2P1 Gene

SuperPathways for MSX2P1 Gene

No Data Available

Interacting Proteins for MSX2P1 Gene

Gene Ontology (GO) - Biological Process for MSX2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSX2P1 Gene

Drugs & Compounds for MSX2P1 Gene

No Compound Related Data Available

Transcripts for MSX2P1 Gene

mRNA/cDNA for MSX2P1 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSX2P1 Gene

Msh homeobox 2 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSX2P1 Gene

No ASD Table

Relevant External Links for MSX2P1 Gene

GeneLoc Exon Structure for
MSX2P1
ECgene alternative splicing isoforms for
MSX2P1

Expression for MSX2P1 Gene

mRNA expression in normal human tissues for MSX2P1 Gene

mRNA differential expression in normal tissues according to GTEx for MSX2P1 Gene

This gene is overexpressed in Whole Blood (x14.6), Spleen (x8.0), and Testis (x4.0).

SOURCE GeneReport for Unigene cluster for MSX2P1 Gene Hs.381329

genes like me logo Genes that share expression patterns with MSX2P1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MSX2P1 Gene

Orthologs for MSX2P1 Gene

Evolution for MSX2P1 Gene

ENSEMBL:
Gene Tree for MSX2P1 (if available)
TreeFam:
Gene Tree for MSX2P1 (if available)

No data available for Orthologs for MSX2P1 Gene

Paralogs for MSX2P1 Gene

No data available for Paralogs for MSX2P1 Gene

Variants for MSX2P1 Gene

Sequence variations from dbSNP and Humsavar for MSX2P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1987665 -- 58,157,961(+) CTGAA(A/G)TTTGT nc-transcript-variant
rs2159444 -- 58,159,218(+) CTTCA(C/T)ATTGT downstream-variant-500B
rs2159445 -- 58,159,289(+) GTTCA(A/G)TGTGA downstream-variant-500B
rs3760172 -- 58,158,107(-) TTTAC(A/T)TCTAC nc-transcript-variant
rs3863503 -- 58,157,743(+) GCTTC(A/C)CATCC nc-transcript-variant

Relevant External Links for MSX2P1 Gene

HapMap Linkage Disequilibrium report
MSX2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MSX2P1 Gene

Disorders for MSX2P1 Gene

Relevant External Links for MSX2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSX2P1

No disorders were found for MSX2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSX2P1 Gene

Publications for MSX2P1 Gene

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PMID: 7518789) Moretti P. … D'Andrea R. (Gene 1994) 2 3 67

Products for MSX2P1 Gene

Sources for MSX2P1 Gene

Back to Top

Content