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Aliases for MSTO2P Gene

Aliases for MSTO2P Gene

  • Misato Family Member 2, Pseudogene 2 3 5
  • Misato Homolog 2 Pseudogene 2 3
  • Misato Homolog 2 (Drosophila) 2
  • MSTO2 3

External Ids for MSTO2P Gene

Previous HGNC Symbols for MSTO2P Gene

  • MSTO2

Previous GeneCards Identifiers for MSTO2P Gene

  • GC01U901840
  • GC01P153981
  • GC01P155583
  • GC01P155587

Summaries for MSTO2P Gene

GeneCards Summary for MSTO2P Gene

MSTO2P (Misato Family Member 2, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSTO2P Gene

Genomics for MSTO2P Gene

Regulatory Elements for MSTO2P Gene

Enhancers for MSTO2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G155222 1.5 ENCODE dbSUPER 61 -520.0 -520038 5.9 CREB3L1 ZFP64 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC TBX21 KIAA0907 ENSG00000271267 MSTO2P THBS3 GBAP1 ASH1L LOC101928120 PYGO2 RUSC1-AS1 HCN3
GH01G155242 1.5 ENCODE dbSUPER 59.3 -501.5 -501526 2.9 CREB3L1 FEZF1 YBX1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 TBX21 KIAA0907 ENSG00000271267 RUSC1-AS1 MSTO2P ASH1L THBS3 PYGO2 LOC101928120 GBA BGLAP
GH01G154950 1.6 Ensembl ENCODE dbSUPER 44.1 -791.0 -791040 8.7 FOXA2 PKNOX1 ZFP64 ARID4B SIN3A YY1 FOS ZNF263 NFYC REST KIAA0907 MSTO2P ENSG00000271267 THBS3 ASH1L CHRNB2 RUSC1-AS1 LOC101928120 PYGO2 RPS27
GH01G156689 2 FANTOM5 Ensembl ENCODE dbSUPER 32.9 +946.2 946232 6.0 CREB3L1 MLX ZFP64 DMAP1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 MCM3 KIAA0907 RRNAD1 MSTO2P LOC246784 BGLAP SYT11 LOC105371453 BCAN ISG20L2 HDGF
GH01G156111 1.9 FANTOM5 ENCODE dbSUPER 33.4 +375.6 375622 19.4 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 KIAA0907 MSTO2P ENSG00000271267 RRNAD1 LMNA ASH1L BGLAP LOC246784 SYT11 MEX3A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MSTO2P on UCSC Golden Path with GeneCards custom track

Promoters for MSTO2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014109 -68 1401 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF143

Genomic Location for MSTO2P Gene

Chromosome:
1
Start:
155,745,768 bp from pter
End:
155,750,688 bp from pter
Size:
4,921 bases
Orientation:
Plus strand

Genomic View for MSTO2P Gene

Genes around MSTO2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSTO2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSTO2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSTO2P Gene

Proteins for MSTO2P Gene

Post-translational modifications for MSTO2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSTO2P Gene

Domains & Families for MSTO2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSTO2P Gene

Function for MSTO2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSTO2P Gene

Localization for MSTO2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSTO2P Gene

Pathways & Interactions for MSTO2P Gene

SuperPathways for MSTO2P Gene

No Data Available

Interacting Proteins for MSTO2P Gene

Gene Ontology (GO) - Biological Process for MSTO2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSTO2P Gene

Drugs & Compounds for MSTO2P Gene

No Compound Related Data Available

Transcripts for MSTO2P Gene

mRNA/cDNA for MSTO2P Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSTO2P Gene

Misato homolog 2 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSTO2P Gene

No ASD Table

Relevant External Links for MSTO2P Gene

GeneLoc Exon Structure for
MSTO2P
ECgene alternative splicing isoforms for
MSTO2P

Expression for MSTO2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MSTO2P Gene

NURSA nuclear receptor signaling pathways regulating expression of MSTO2P Gene:

MSTO2P

SOURCE GeneReport for Unigene cluster for MSTO2P Gene:

Hs.720829
genes like me logo Genes that share expression patterns with MSTO2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSTO2P Gene

Orthologs for MSTO2P Gene

Evolution for MSTO2P Gene

ENSEMBL:
Gene Tree for MSTO2P (if available)
TreeFam:
Gene Tree for MSTO2P (if available)

No data available for Orthologs for MSTO2P Gene

Paralogs for MSTO2P Gene

No data available for Paralogs for MSTO2P Gene

Variants for MSTO2P Gene

Sequence variations from dbSNP and Humsavar for MSTO2P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000346562 -- 155,748,837(+) TCATG(C/T)CCTTT intron-variant
rs1000948681 -- 155,747,369(+) CATCC(C/G)CGGAG nc-transcript-variant, upstream-variant-2KB
rs1002359761 -- 155,745,681(+) AAGGA(A/T)CGGCG intron-variant, upstream-variant-2KB
rs1002849692 -- 155,751,171(+) TTATA(C/G)ATAAG intron-variant, downstream-variant-500B
rs1002959561 -- 155,744,708(+) TTTTT(A/T)TTTTA downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MSTO2P Gene

Variant ID Type Subtype PubMed ID
esv2718418 CNV deletion 23290073
esv2718429 CNV deletion 23290073
esv33869 CNV loss 17666407
esv3890671 CNV gain 25118596
nsv3043 CNV deletion 18451855
nsv3065 CNV deletion 18451855
nsv428246 CNV gain 18775914
nsv436522 CNV deletion 17901297
nsv482134 CNV gain 20164927
nsv547965 CNV gain 21841781
nsv946419 CNV duplication 23825009
nsv946422 CNV duplication 23825009

Relevant External Links for MSTO2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSTO2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MSTO2P Gene

Disorders for MSTO2P Gene

Relevant External Links for MSTO2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSTO2P

No disorders were found for MSTO2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSTO2P Gene

Publications for MSTO2P Gene

  1. An anthropoid-specific segmental duplication on human chromosome 1q22. (PMID: 16545939) Kuryshev V.Y. … Wiemann S. (Genomics 2006) 2 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MSTO2P Gene

Sources for MSTO2P Gene

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