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Aliases for MSTO2P Gene

Aliases for MSTO2P Gene

  • Misato Family Member 2, Pseudogene 2 3 5
  • Misato Homolog 2 Pseudogene 2 3
  • Misato Homolog 2 (Drosophila) 2
  • MSTO2 3

External Ids for MSTO2P Gene

Previous HGNC Symbols for MSTO2P Gene

  • MSTO2

Previous GeneCards Identifiers for MSTO2P Gene

  • GC01U901840
  • GC01P153981
  • GC01P155583
  • GC01P155587

Summaries for MSTO2P Gene

GeneCards Summary for MSTO2P Gene

MSTO2P (Misato Family Member 2, Pseudogene) is a Pseudogene.

Additional gene information for MSTO2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSTO2P Gene

Genomics for MSTO2P Gene

GeneHancer (GH) Regulatory Elements for MSTO2P Gene

Promoters and enhancers for MSTO2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I155744 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 -0.2 -206 1.7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 POLR2B ZNF213 E2F8 MSTO2P YY1AP1 SYT11 LOC100505728 ENSG00000227673
GH01I155242 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 131.1 -501.5 -501526 2.9 FEZF1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 SP3 GBA KHDC4 GON4L CLK2 ENSG00000271267 MSTO1 MSTO2P RUSC1-AS1 THBS3 SHC1
GH01I155222 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 101.2 -520.0 -520037 5.9 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A MEF2D GBAP1 KHDC4 MSTO1 ENSG00000271267 GON4L MSTO2P CLK2 RUSC1-AS1 LOC101928120 THBS3
GH01I156111 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 41 +375.6 375621 19.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 LMNA GON4L CLK2 RRNAD1 KHDC4 LOC246784 MSTO1 MSTO2P PRCC ISG20L2
GH01I154998 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 35.5 -741.3 -741317 11.3 CLOCK MLX YBX1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 SP3 ZBTB7B GON4L CLK2 UBAP2L KHDC4 ENSG00000271267 RUSC1-AS1 MSTO1 THBS3 MSTO2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MSTO2P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MSTO2P gene promoter:

Genomic Locations for MSTO2P Gene

Genomic Locations for MSTO2P Gene
chr1:155,745,768-155,750,688
(GRCh38/hg38)
Size:
4,921 bases
Orientation:
Plus strand
chr1:155,581,011-155,721,369
(GRCh37/hg19)

Genomic View for MSTO2P Gene

Genes around MSTO2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSTO2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSTO2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSTO2P Gene

Proteins for MSTO2P Gene

Post-translational modifications for MSTO2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSTO2P Gene

Domains & Families for MSTO2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSTO2P Gene

Function for MSTO2P Gene

Phenotypes From GWAS Catalog for MSTO2P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSTO2P Gene

Localization for MSTO2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MSTO2P Gene

Pathways & Interactions for MSTO2P Gene

SuperPathways for MSTO2P Gene

No Data Available

Interacting Proteins for MSTO2P Gene

Gene Ontology (GO) - Biological Process for MSTO2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSTO2P Gene

Drugs & Compounds for MSTO2P Gene

No Compound Related Data Available

Transcripts for MSTO2P Gene

mRNA/cDNA for MSTO2P Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSTO2P Gene

Misato homolog 2 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSTO2P Gene

No ASD Table

Relevant External Links for MSTO2P Gene

GeneLoc Exon Structure for
MSTO2P
ECgene alternative splicing isoforms for
MSTO2P

Expression for MSTO2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MSTO2P Gene

NURSA nuclear receptor signaling pathways regulating expression of MSTO2P Gene:

MSTO2P

SOURCE GeneReport for Unigene cluster for MSTO2P Gene:

Hs.720829
genes like me logo Genes that share expression patterns with MSTO2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MSTO2P Gene

Orthologs for MSTO2P Gene

Evolution for MSTO2P Gene

ENSEMBL:
Gene Tree for MSTO2P (if available)
TreeFam:
Gene Tree for MSTO2P (if available)

No data available for Orthologs for MSTO2P Gene

Paralogs for MSTO2P Gene

No data available for Paralogs for MSTO2P Gene

Variants for MSTO2P Gene

Sequence variations from dbSNP and Humsavar for MSTO2P Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000346562 -- 155,748,837(+) T/C intron_variant
rs1000948681 -- 155,747,369(+) C/G non_coding_transcript_variant
rs1002359761 -- 155,745,681(+) T/A upstream_transcript_variant
rs1002849692 -- 155,751,171(+) G/C downstream_transcript_variant
rs1002959561 -- 155,744,708(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MSTO2P Gene

Variant ID Type Subtype PubMed ID
esv2718418 CNV deletion 23290073
esv2718429 CNV deletion 23290073
esv33869 CNV loss 17666407
esv3890671 CNV gain 25118596
nsv3043 CNV deletion 18451855
nsv3065 CNV deletion 18451855
nsv428246 CNV gain 18775914
nsv436522 CNV deletion 17901297
nsv482134 CNV gain 20164927
nsv547965 CNV gain 21841781
nsv946419 CNV duplication 23825009
nsv946422 CNV duplication 23825009

Additional Variant Information for MSTO2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSTO2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MSTO2P Gene

Disorders for MSTO2P Gene

Additional Disease Information for MSTO2P

No disorders were found for MSTO2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSTO2P Gene

Publications for MSTO2P Gene

  1. An anthropoid-specific segmental duplication on human chromosome 1q22. (PMID: 16545939) Kuryshev VY … Wiemann S (Genomics 2006) 2 3 58
  2. Long non-coding RNA MSTO2P promotes the proliferation and colony formation in gastric cancer by indirectly regulating miR-335 expression. (PMID: 28618927) Li H … Lv L (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2017) 3 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for MSTO2P Gene

Sources for MSTO2P Gene

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