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Aliases for MSTO2P Gene

Aliases for MSTO2P Gene

  • Misato Family Member 2, Pseudogene 2 3 5
  • Misato Homolog 2 Pseudogene 2 3
  • Misato Homolog 2 (Drosophila) 2
  • MSTO2 3

External Ids for MSTO2P Gene

Previous HGNC Symbols for MSTO2P Gene

  • MSTO2

Previous GeneCards Identifiers for MSTO2P Gene

  • GC01U901840
  • GC01P153981
  • GC01P155583
  • GC01P155587

Summaries for MSTO2P Gene

GeneCards Summary for MSTO2P Gene

MSTO2P (Misato Family Member 2, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSTO2P Gene

Genomics for MSTO2P Gene

Regulatory Elements for MSTO2P Gene

Enhancers for MSTO2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F155242 1.2 ENCODE 76 -501.5 -501526 2.9 CREB3L1 YBX1 FEZF1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 TBX21 KIAA0907 ENSG00000271267 MSTO2P RUSC1-AS1 THBS3 ASH1L PYGO2 LOC101928120 KRTCAP2 GBA
GH01F154950 1.1 ENCODE 64.1 -791.0 -791040 8.7 PKNOX1 ZFP64 ARID4B SIN3A FOS ZNF263 NFYC REST KAT8 SMARCA4 KIAA0907 ENSG00000271267 MSTO2P THBS3 LOC101928120 PYGO2 RUSC1-AS1 ASH1L-AS1 ASH1L CHRNB2
GH01F155222 1.2 ENCODE 57.7 -520.0 -520038 5.9 CREB3L1 ZFP64 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC TBX21 KIAA0907 ENSG00000271267 MSTO2P THBS3 LOC101928120 PYGO2 GBAP1 ASH1L DPM3 RUSC1-AS1
GH01F155253 1.2 ENCODE 46.8 -490.4 -490423 3.6 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 KIAA0907 ENSG00000271267 THBS3 MSTO2P RUSC1-AS1 GBA KRTCAP2 LOC101928120 DPM3 PYGO2
GH01F155856 1.5 FANTOM5 ENCODE 36.9 +113.2 113182 5.7 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 RRNAD1 KIAA0907 ENSG00000271267 MSTO2P THBS3 ASH1L-AS1 LOC101928120 PYGO2 KRTCAP2 DCST1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MSTO2P on UCSC Golden Path with GeneCards custom track

Promoters for MSTO2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000286154 -68 1801 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF143 ZNF207 SP3

Genomic Location for MSTO2P Gene

Chromosome:
1
Start:
155,745,768 bp from pter
End:
155,750,688 bp from pter
Size:
4,921 bases
Orientation:
Plus strand

Genomic View for MSTO2P Gene

Genes around MSTO2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSTO2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSTO2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSTO2P Gene

Proteins for MSTO2P Gene

Post-translational modifications for MSTO2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MSTO2P Gene

Domains & Families for MSTO2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSTO2P Gene

Function for MSTO2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSTO2P Gene

Localization for MSTO2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSTO2P Gene

Pathways & Interactions for MSTO2P Gene

SuperPathways for MSTO2P Gene

No Data Available

Interacting Proteins for MSTO2P Gene

Gene Ontology (GO) - Biological Process for MSTO2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSTO2P Gene

Transcripts for MSTO2P Gene

mRNA/cDNA for MSTO2P Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSTO2P Gene

Misato homolog 2 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSTO2P Gene

No ASD Table

Relevant External Links for MSTO2P Gene

GeneLoc Exon Structure for
MSTO2P
ECgene alternative splicing isoforms for
MSTO2P

Expression for MSTO2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MSTO2P Gene

NURSA nuclear receptor signaling pathways regulating expression of MSTO2P Gene:

MSTO2P

SOURCE GeneReport for Unigene cluster for MSTO2P Gene:

Hs.720829
genes like me logo Genes that share expression patterns with MSTO2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MSTO2P Gene

Orthologs for MSTO2P Gene

Evolution for MSTO2P Gene

ENSEMBL:
Gene Tree for MSTO2P (if available)
TreeFam:
Gene Tree for MSTO2P (if available)

No data available for Orthologs for MSTO2P Gene

Paralogs for MSTO2P Gene

No data available for Paralogs for MSTO2P Gene

Variants for MSTO2P Gene

Sequence variations from dbSNP and Humsavar for MSTO2P Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10908481 -- 155,743,859(+) tgtat(G/T)catta upstream-variant-2KB
rs10908482 -- 155,744,082(+) acttt(C/T)ggagg upstream-variant-2KB
rs112418368 -- 155,749,370(+) ATGCA(C/T)GTACC intron-variant, nc-transcript-variant, downstream-variant-500B
rs11264409 -- 155,745,850(+) GGGAG(A/G)TGCTC intron-variant, nc-transcript-variant
rs112719617 -- 155,746,053(+) GAGAG(A/C)TGTGC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MSTO2P Gene

Variant ID Type Subtype PubMed ID
nsv946422 CNV duplication 23825009
nsv946419 CNV duplication 23825009
nsv547965 CNV gain 21841781
nsv482134 CNV gain 20164927
nsv436522 CNV deletion 17901297
nsv428246 CNV gain 18775914
nsv3065 CNV deletion 18451855
nsv3043 CNV deletion 18451855
esv3890671 CNV gain 25118596
esv33869 CNV loss 17666407
esv2718429 CNV deletion 23290073
esv2718418 CNV deletion 23290073

Relevant External Links for MSTO2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSTO2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MSTO2P Gene

Disorders for MSTO2P Gene

Relevant External Links for MSTO2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSTO2P

No disorders were found for MSTO2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSTO2P Gene

Publications for MSTO2P Gene

  1. An anthropoid-specific segmental duplication on human chromosome 1q22. (PMID: 16545939) Kuryshev V.Y. … Wiemann S. (Genomics 2006) 2 3 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MSTO2P Gene

Sources for MSTO2P Gene

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