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Aliases for MST1 Gene

Aliases for MST1 Gene

  • Macrophage Stimulating 1 2 3
  • HGFL 3 4 6
  • Macrophage-Stimulating Protein 3 4
  • D3F15S2 3 4
  • DNF15S2 3 4
  • MSP 3 4
  • Macrophage Stimulating 1 (Hepatocyte Growth Factor-Like) 3
  • Hepatocyte Growth Factor-Like Protein Homolog 3
  • Hepatocyte Growth Factor-Like Protein 3
  • Macrophage Stimulatory Protein 4
  • Hepatocyte Growth Factor-Like 2
  • EC 3.4.21 63
  • NF15S2 3

External Ids for MST1 Gene

Previous HGNC Symbols for MST1 Gene

  • D3F15S2
  • HGFL
  • DNF15S2

Previous GeneCards Identifiers for MST1 Gene

  • GC03P046385
  • GC03P048678
  • GC03M049575
  • GC03M049681
  • GC03M049696
  • GC03M049730

Summaries for MST1 Gene

Entrez Gene Summary for MST1 Gene

  • The protein encoded by this gene contains four kringle domains and a serine protease domain, similar to that found in hepatic growth factor. Despite the presence of the serine protease domain, the encoded protein may not have any proteolytic activity. The receptor for this protein is RON tyrosine kinase, which upon activation stimulates ciliary motility of ciliated epithelial lung cells. This protein is secreted and cleaved to form an alpha chain and a beta chain bridged by disulfide bonds. [provided by RefSeq, Jan 2010]

GeneCards Summary for MST1 Gene

MST1 (Macrophage Stimulating 1) is a Protein Coding gene. Diseases associated with MST1 include cholangitis, primary sclerosing and t-cell immunodeficiency, recurrent infections, autoimmunity, and cardiac malformations. Among its related pathways are amb2 Integrin signaling and Integrated Pancreatic Cancer Pathway. GO annotations related to this gene include serine-type endopeptidase activity. An important paralog of this gene is PLAT.

Gene Wiki entry for MST1 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MST1 Gene

Genomics for MST1 Gene

Regulatory Elements for MST1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MST1 Gene

Start:
49,683,947 bp from pter
End:
49,689,528 bp from pter
Size:
5,582 bases
Orientation:
Minus strand

Genomic View for MST1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MST1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MST1 Gene

Proteins for MST1 Gene

  • Protein details for MST1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P26927-HGFL_HUMAN
    Recommended name:
    Hepatocyte growth factor-like protein
    Protein Accession:
    P26927
    Secondary Accessions:
    • A6NLA3
    • A8MSX3
    • Q13350
    • Q14870
    • Q6GTN4

    Protein attributes for MST1 Gene

    Size:
    711 amino acids
    Molecular mass:
    80320 Da
    Quaternary structure:
    • Dimer of an alpha chain and a beta chain linked by a disulfide bond. Interacts (via beta chain) with MST1R (via SEMA domain).

    Three dimensional structures from OCA and Proteopedia for MST1 Gene

neXtProt entry for MST1 Gene

Proteomics data for MST1 Gene at MOPED

Selected DME Specific Peptides for MST1 Gene

Post-translational modifications for MST1 Gene

  • Cleaved after Arg-483, probably by HPN/Hepsin, to yield the active form consisting of two disulfide-linked chains
  • Glycosylation at Asn72, Asn296, and Asn615
  • Modification sites at PhosphoSitePlus

Other Protein References for MST1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

Domains for MST1 Gene

Suggested Antigen Peptide Sequences for MST1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P26927

UniProtKB/Swiss-Prot:

HGFL_HUMAN :
  • P26927
Domain:
  • Contains 4 kringle domains.
  • Contains 1 PAN domain.
  • Contains 1 peptidase S1 domain.
Family:
  • Belongs to the peptidase S1 family. Plasminogen subfamily.
genes like me logo Genes that share domains with MST1: view

No data available for Gene Families for MST1 Gene

Function for MST1 Gene

Molecular function for MST1 Gene

GENATLAS Biochemistry: macrophage stimulating,protein 1,paralog to HGF

Enzyme Numbers (IUBMB) for MST1 Gene

Gene Ontology (GO) - Molecular Function for MST1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003824 catalytic activity --
GO:0004252 serine-type endopeptidase activity IEA --
genes like me logo Genes that share ontologies with MST1: view
genes like me logo Genes that share phenotypes with MST1: view

Animal Models for MST1 Gene

MGI Knock Outs for MST1:

Animal Model Products

CRISPR Products

miRNA for MST1 Gene

miRTarBase miRNAs that target MST1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MST1

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targeting and HOMER Transcription for MST1 Gene

Localization for MST1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MST1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MST1 Gene COMPARTMENTS Subcellular localization image for MST1 gene
Compartment Confidence
extracellular 5
cytoskeleton 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MST1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with MST1: view

Pathways for MST1 Gene

genes like me logo Genes that share pathways with MST1: view

Pathways by source for MST1 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • MAP Kinase (MAPK) Signaling Pathway in human,mouse,rat

Gene Ontology (GO) - Biological Process for MST1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0007283 spermatogenesis --
GO:0007566 embryo implantation --
GO:0008150 biological_process ND --
GO:0030317 sperm motility --
genes like me logo Genes that share ontologies with MST1: view

Compounds for MST1 Gene

(10) Novoseek inferred chemical compound relationships for MST1 Gene

Compound -log(P) Hits PubMed IDs
tyrosine 70.8 56
serine 42.1 12
wortmannin 41.3 2
n-formylmethionyl-leucylphenylalanine 32.9 1
chloramphenicol 3.27 1
genes like me logo Genes that share compounds with MST1: view

Transcripts for MST1 Gene

Unigene Clusters for MST1 Gene

Macrophage stimulating 1 (hepatocyte growth factor-like):
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MST1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MST1 Gene

No ASD Table

Relevant External Links for MST1 Gene

GeneLoc Exon Structure for
MST1
ECgene alternative splicing isoforms for
MST1

Expression for MST1 Gene

mRNA expression in normal human tissues for MST1 Gene

mRNA differential expression in normal tissues according to GTEx for MST1 Gene

This gene is overexpressed in Liver (31.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MST1 Gene

SOURCE GeneReport for Unigene cluster for MST1 Gene Hs.349110

genes like me logo Genes that share expressions with MST1: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for MST1 Gene

Orthologs for MST1 Gene

This gene was present in the common ancestor of animals.

Orthologs for MST1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MST1 35
  • 99.4 (n)
  • 99.31 (a)
MST1 36
  • 88 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MST1 35
  • 81.97 (n)
  • 82.68 (a)
MST1 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MST1 35
  • 86.53 (n)
  • 88.69 (a)
MST1 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mst1 35
  • 81.4 (n)
  • 81.02 (a)
Mst1 16
Mst1 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MST1 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MST1 36
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mst1 35
  • 80.83 (n)
  • 81.02 (a)
chicken
(Gallus gallus)
Aves MST1 35
  • 67.44 (n)
  • 63.85 (a)
MST1 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MST1 36
  • 64 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC54016 35
tropical clawed frog
(Silurana tropicalis)
Amphibia mst1 35
  • 61.72 (n)
  • 60.99 (a)
Str.2230 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10681 35
zebrafish
(Danio rerio)
Actinopterygii mst1 35
  • 59.82 (n)
  • 57.89 (a)
mst1 36
  • 57 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Tequila 36
  • 5 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea svh-1 36
  • 14 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 20 (a)
OneToMany
Species with no ortholog for MST1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MST1 Gene

ENSEMBL:
Gene Tree for MST1 (if available)
TreeFam:
Gene Tree for MST1 (if available)

Paralogs for MST1 Gene

Paralogs for MST1 Gene

Pseudogenes.org Pseudogenes for MST1 Gene

genes like me logo Genes that share paralogs with MST1: view

Variants for MST1 Gene

Sequence variations from dbSNP and Humsavar for MST1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1057287 -- 49,685,314(-) TGCGC(G/T)TGGTT reference, missense, nc-transcript-variant, downstream-variant-500B
rs1057288 -- 49,684,784(-) AGATG(C/G)TGTGT missense, reference, downstream-variant-500B, nc-transcript-variant
rs1057319 -- 49,684,128(-) AATTA(G/T)AATCC missense, reference, stop-lost, nc-transcript-variant
rs1057363 -- 49,684,015(-) CTTGA(C/T)GCCAT utr-variant-3-prime, nc-transcript-variant
rs2087731 -- 49,686,254(-) GAGGA(A/G)GGTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MST1 Gene

Variant ID Type Subtype PubMed ID
nsv508217 CNV Loss 20534489
nsv820990 CNV Duplication 20802225
esv28815 CNV Gain+Loss 19812545
nsv471425 CNV Duplication 19718026
nsv482080 CNV Gain 20164927
nsv822077 CNV Gain 20364138

Relevant External Links for MST1 Gene

HapMap Linkage Disequilibrium report
MST1
Human Gene Mutation Database (HGMD)
MST1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MST1 Gene

Disorders for MST1 Gene

UniProtKB/Swiss-Prot

HGFL_HUMAN
  • Note=MST1 variant Cys-686 may be associated with inflammatory bowel disease (IBD), a chronic, relapsing inflammation of the gastrointestinal tract with a complex etiology. It is unsure whether Cys-689 itself or a variation in linkage disequilibrium with Cys-689 is responsible for the association with IBD. {ECO:0000269 PubMed:19079170, ECO:0000269 PubMed:20228799}.

(12) Novoseek inferred disease relationships for MST1 Gene

Disease -log(P) Hits PubMed IDs
metastasis 33.7 5
lung tumor 25.1 2
tumors 24.9 11
pancreatic cancer 21.1 4
cancer 11.9 3

Relevant External Links for MST1

Genetic Association Database (GAD)
MST1
Human Genome Epidemiology (HuGE) Navigator
MST1
genes like me logo Genes that share disorders with MST1: view

Publications for MST1 Gene

  1. Cloning, sequencing, and expression of human macrophage stimulating protein (MSP, MST1) confirms MSP as a member of the family of kringle proteins and locates the MSP gene on chromosome 3. (PMID: 8393443) Yoshimura T. … Leonard E.J. (J. Biol. Chem. 1993) 2 3 4 23
  2. Macrophage stimulating protein: purification, partial amino acid sequence, and cellular activity. (PMID: 1827141) Skeel A. … Leonard E.J. (J. Exp. Med. 1991) 3 4 23
  3. Gene-centric association mapping of chromosome 3p implicates MST1 in IBD pathogenesis. (PMID: 19079170) Goyette P. … Rioux J.D. (Mucosal Immunol 2008) 3 4 23
  4. Genome-wide association identifies multiple ulcerative colitis susceptibility loci. (PMID: 20228799) McGovern D.P. … Seielstad M. (Nat. Genet. 2010) 3 4 48
  5. Association analysis of 3p21 with Crohn's disease in a New Zealand population. (PMID: 20307617) Morgan A.R. … Ferguson L.R. (Hum. Immunol. 2010) 3 48

Products for MST1 Gene

  • Addgene plasmids for MST1

Sources for MST1 Gene

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