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MSLNL Gene

protein-coding   GIFtS: 30
GCID: GC16M000819

Mesothelin-Like

(Previous name: chromosome 16 open reading frame 37)
(Previous symbol: C16orf37)
  See MSLNL-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
mesothelin-like1 2
C16orf371 2 3
MPFL2 3
Chromosome 16 Open Reading Frame 371
Pre-pro-megakaryocyte-potentiating-factor-like3

External Ids:    HGNC: 141701   Entrez Gene: 4018272   Ensembl: ENSG000001620067   UniProtKB: Q96KJ43   

Export aliases for MSLNL gene to outside databases

Previous GC identifers: GC16M000766 GC16M000741


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MSLNL Gene:
MSLNL (mesothelin-like) is a protein-coding gene. Diseases associated with MSLNL include patellofemoral pain syndrome, and hemarthrosis. An important paralog of this gene is MSLN.

UniProtKB/Swiss-Prot: MSLNL_HUMAN, Q96KJ4
Function: May play a role in cellular adhesion (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MSLNL gene promoter:
         Elk-1   Spz1   POU2F1   POU2F1a   MyoD   Nkx2-5   NF-Y   E47   CBF(2)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMSLNL promoter sequence
   Search Chromatin IP Primers for MSLNL

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MSLNL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.3   Ensembl cytogenetic band:  16p13.3   HGNC cytogenetic band: 16p13.3

MSLNL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MSLNL gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M000819:  view genomic region     (about GC identifiers)

Start:
819,428 bp from pter      End:
833,370 bp from pter
Size:
13,943 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MSLNL_HUMAN, Q96KJ4 (See protein sequence)
Recommended Name: Mesothelin-like protein precursor  
Size: 702 amino acids; 74540 Da
Sequence caution: Sequence=AAK61254.1; Type=Erroneous gene model prediction; Note=The sequence shown is based on
gene prediction by similarity with the mouse ortholog; Sequence=EAW85717.1; Type=Erroneous gene model prediction;
Note=The sequence shown is based on gene prediction by similarity with the mouse ortholog;

Explore the universe of human proteins at neXtProt for MSLNL: NX_Q96KJ4

Explore proteomics data for MSLNL at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn122, Asn307, Asn424
  • Modification sites at PhosphoSitePlus

  • See MSLNL Protein Expression from SPIRE MOPED, PaxDB, and MaxQB


    ENSEMBL proteins: 
     ENSP00000441381   ENSP00000415767   ENSP00000293892  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR026672 Mesothelin-like_protein
     IPR026664 Stereocilin_related
     IPR010335 Mesothelin

    Graphical View of Domain Structure for InterPro Entry Q96KJ4

    ProtoNet protein and cluster: Q96KJ4

    UniProtKB/Swiss-Prot: MSLNL_HUMAN, Q96KJ4
    Similarity: Belongs to the mesothelin family


    Find genes that share domains with MSLNL           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MSLNL_HUMAN, Q96KJ4
    Function: May play a role in cellular adhesion (By similarity)

    Animal Models:

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    MSLNL_HUMAN, Q96KJ4: Membrane; Single-pass type I membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane2
    cytosol1
    extracellular1
    mitochondrion1
    nucleus1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with MSLNL           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MSLNL
    Interactions:

        Search GeneGlobe Interaction Network for MSLNL

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007155cell adhesion IEA--

    Find genes that share ontologies with MSLNL           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Tocris compounds for MSLNL



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for MSLNL gene: 
    NM_001025190.1  

    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000543963 ENST00000537221 ENST00000442466 ENST00000293892(uc002cjz.1)

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    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MSLNL expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    MSLNL Expression
    About this image

    MSLNL Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MSLNL Protein Expression
        Custom PCR Arrays for MSLNL
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MSLNL

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for MSLNL gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia MSLNL6
    mesothelin-like
    38(a)
    1 ↔ 1
    GL343650.1(277458-291313)
            Species with no ortholog for MSLNL

    ENSEMBL Gene Tree for MSLNL (if available)
    TreeFam Gene Tree for MSLNL (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for MSLNL gene
    MSLN2  

    Find genes that share paralogs with MSLNL           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    3 SNPs for MSLNL    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs97465391,2,4
    ----see VAR_0392582 mis40--------
    rs125993631,2,4
    ----see VAR_0392572 mis40--------

    HapMap Linkage Disequilibrium report for MSLNL (819428 - 833370 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for MSLNL (see all 18):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2750233CNV Deletion23290073
    esv2659324CNV Deletion23128226
    esv2422427CNV Duplication17116639
    nsv1702CNV Insertion18451855
    dgv2499n71CNV Loss21882294
    dgv2475n71CNV Loss21882294
    dgv2500n71CNV Loss21882294
    nsv904796CNV Loss21882294
    nsv904797CNV Loss21882294
    nsv817712CNV Loss17921354

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing MSLNL
    DNA2.0 Custom Variant and Variant Library Synthesis for MSLNL

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    2 diseases for MSLNL:    
    About MalaCards
    patellofemoral pain syndrome    hemarthrosis

    2 diseases from the University of Copenhagen DISEASES database for MSLNL:
    Patellofemoral pain syndrome     Hemarthrosis

    Find genes that share disorders with MSLNL           About GenesLikeMe


    Export disorders for MSLNL gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MSLNL gene integrated from 10 sources:
    (articles sorted by number of sources associating them with MSLNL)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PubMed id 11157797)1, 2 Daniels R.J....Higgs D.R. (Hum. Mol. Genet. 2001)
    2. Inactivation of the MSLNL gene encoding mesothelin-like protein during African great ape evolution. (PubMed id 22265842)1 Kim D.W....Hahn Y. (Gene 2012)
    3. Soluble mesothelin, megakaryocyte potentiating factor, and osteopontin as markers of patient response and outcome in mesothelioma. (PubMed id 21841505)1 Hollevoet K....van Meerbeeck J.P. (J Thorac Oncol 2011)
    4. The sequence and analysis of duplication-rich human chromosome 16. (PubMed id 15616553)2 Martin J.... Pennacchio L.A. (Nature 2004)
    5. Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats. (PubMed id 19128473)9 Sathyanarayana B.K....Lee B. (BMC Struct. Biol. 2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 401827 HGNC: 14170 Ensembl:ENSG00000162006 euGenes: HUgn401827 ECgene: MSLNL
    H-InvDB: MSLNL

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MSLNL Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MSLNL gene:
    Search GeneIP for patents involving MSLNL

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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