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Aliases for MSL3P1 Gene

Aliases for MSL3P1 Gene

  • Male-Specific Lethal 3 Homolog (Drosophila) Pseudogene 1 2 3 5
  • Male-Specific Lethal-3 Homolog 2 3 4
  • MSL3-Like 2 3 4
  • MSL3L2 3 4
  • Putative Male-Specific Lethal-3 Protein-Like 2 3
  • Male-Specific Lethal-3 Homolog Pseudogene 1 4
  • Male-Specific Lethal 3-Like 2 (Drosophila) 2
  • Male-Specific Lethal 3 Homolog Pseudogene 3
  • Male-Specific Lethal 3-Like 2 3

External Ids for MSL3P1 Gene

Previous HGNC Symbols for MSL3P1 Gene

  • MSL3L2

Previous GeneCards Identifiers for MSL3P1 Gene

  • GC02M234776

Summaries for MSL3P1 Gene

GeneCards Summary for MSL3P1 Gene

MSL3P1 (Male-Specific Lethal 3 Homolog (Drosophila) Pseudogene 1) is a Pseudogene.

UniProtKB/Swiss-Prot for MSL3P1 Gene

  • May be involved in chromatin remodeling and transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSL3P1 Gene

Genomics for MSL3P1 Gene

Regulatory Elements for MSL3P1 Gene

Enhancers for MSL3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F233867 0.2 ENCODE 14 +0.1 53 1.1 ATF1 CREB3L1 ZNF76 SIN3A ZNF2 CREM ZBTB2 SMAD5 HCFC1 ZNF518A MSL3P1 TRPM8 UGT1A4 HJURP ENSG00000279809
GH02F233852 1.1 ENCODE 12.5 +14.7 14667 3.9 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 FOS SP3 NFYC MSL3P1 HJURP PIR47187
GH02F233857 1.3 Ensembl ENCODE 12.4 +10.6 10621 0.9 HDAC1 ATF1 PKNOX1 SIN3A RAD21 GATA2 ZNF143 CEBPB REST SMARCA4 MSL3P1 HJURP ENSG00000279809
GH02F233832 1.3 Ensembl ENCODE 7.8 +35.5 35546 1.0 CTCF ZNF654 HLF MAX SIN3A NR3C1 RAD21 JUND POLR2A SMC3 MROH2A HJURP MSL3P1 PIR47187
GH02F233816 0.2 ENCODE 5.4 +51.0 51014 2.0 ZFHX2 CEBPA HNF4G FEZF1 KDM1A RAD21 MROH2A MSL3P1 PIR47187
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MSL3P1 on UCSC Golden Path with GeneCards custom track

Promoters for MSL3P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000019512 243 1199 ATF1 CREB3L1 ZNF76 SIN3A ZNF2 RCOR1 CREM ZBTB2 SMAD5 HCFC1

Genomic Location for MSL3P1 Gene

Chromosome:
2
Start:
233,865,437 bp from pter
End:
233,868,444 bp from pter
Size:
3,008 bases
Orientation:
Minus strand

Genomic View for MSL3P1 Gene

Genes around MSL3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSL3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSL3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSL3P1 Gene

Proteins for MSL3P1 Gene

  • Protein details for MSL3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C860-MS3L2_HUMAN
    Recommended name:
    Putative male-specific lethal-3 protein-like 2
    Protein Accession:
    P0C860

    Protein attributes for MSL3P1 Gene

    Size:
    447 amino acids
    Molecular mass:
    51070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSL3P1 Gene

Post-translational modifications for MSL3P1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MSL3P1 Gene

Domains & Families for MSL3P1 Gene

Protein Domains for MSL3P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MSL3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0C860

UniProtKB/Swiss-Prot:

MS3L2_HUMAN :
  • Contains 1 chromo domain.
Domain:
  • Contains 1 chromo domain.
  • Contains 1 MRG domain.
genes like me logo Genes that share domains with MSL3P1: view

No data available for Gene Families for MSL3P1 Gene

Function for MSL3P1 Gene

Molecular function for MSL3P1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in chromatin remodeling and transcriptional regulation.

Phenotypes for MSL3P1 Gene

GenomeRNAi human phenotypes for MSL3P1:
genes like me logo Genes that share phenotypes with MSL3P1: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSL3P1 Gene

Localization for MSL3P1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MSL3P1 Gene

Gene Ontology (GO) - Cellular Components for MSL3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035267 NuA4 histone acetyltransferase complex IBA --
genes like me logo Genes that share ontologies with MSL3P1: view

No data available for Subcellular locations from COMPARTMENTS for MSL3P1 Gene

Pathways & Interactions for MSL3P1 Gene

SuperPathways for MSL3P1 Gene

No Data Available

Interacting Proteins for MSL3P1 Gene

Gene Ontology (GO) - Biological Process for MSL3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006338 chromatin remodeling IBA --
GO:0006342 chromatin silencing IBA --
GO:0006351 transcription, DNA-templated IEA --
GO:0016575 histone deacetylation IBA --
GO:0043967 histone H4 acetylation IBA --
genes like me logo Genes that share ontologies with MSL3P1: view

No data available for Pathways by source and SIGNOR curated interactions for MSL3P1 Gene

Transcripts for MSL3P1 Gene

mRNA/cDNA for MSL3P1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(36) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MSL3P1 Gene

Male-specific lethal 3 homolog (Drosophila) pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSL3P1 Gene

No ASD Table

Relevant External Links for MSL3P1 Gene

GeneLoc Exon Structure for
MSL3P1
ECgene alternative splicing isoforms for
MSL3P1

Expression for MSL3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MSL3P1 Gene

mRNA differential expression in normal tissues according to GTEx for MSL3P1 Gene

This gene is overexpressed in Testis (x12.3).

Protein differential expression in normal tissues from HIPED for MSL3P1 Gene

This gene is overexpressed in Adipocyte (39.4) and Pancreas (29.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for MSL3P1 Gene



Protein tissue co-expression partners for MSL3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MSL3P1 Gene:

MSL3P1

SOURCE GeneReport for Unigene cluster for MSL3P1 Gene:

Hs.355809
genes like me logo Genes that share expression patterns with MSL3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for MSL3P1 Gene

Orthologs for MSL3P1 Gene

Evolution for MSL3P1 Gene

ENSEMBL:
Gene Tree for MSL3P1 (if available)
TreeFam:
Gene Tree for MSL3P1 (if available)

No data available for Orthologs for MSL3P1 Gene

Paralogs for MSL3P1 Gene

(1) SIMAP similar genes for MSL3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MSL3P1: view

No data available for Paralogs for MSL3P1 Gene

Variants for MSL3P1 Gene

Sequence variations from dbSNP and Humsavar for MSL3P1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1051585 -- 233,867,291(-) CNGAC(A/T)GTAGT nc-transcript-variant
rs1051586 -- 233,867,282(-) GTGAA(A/G)ACAAG nc-transcript-variant
rs1051596 -- 233,867,085(-) TGCCA(C/G)ACCAA nc-transcript-variant
rs1051599 -- 233,866,978(-) TGCCA(A/G)CATGA nc-transcript-variant
rs10541114 -- 233,870,282(+) CTTGT(-/TGT)CTTCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MSL3P1 Gene

Variant ID Type Subtype PubMed ID
nsv1013712 CNV loss 25217958
nsv3216 CNV insertion 18451855

Relevant External Links for MSL3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSL3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MSL3P1 Gene

Disorders for MSL3P1 Gene

Relevant External Links for MSL3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSL3P1

No disorders were found for MSL3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSL3P1 Gene

Publications for MSL3P1 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  3. MOF and histone H4 acetylation at lysine 16 are critical for DNA damage response and double-strand break repair. (PMID: 20479123) Sharma G.G. … Pandita T.K. (Mol. Cell. Biol. 2010) 3 64
  4. A human protein complex homologous to the Drosophila MSL complex is responsible for the majority of histone H4 acetylation at lysine 16. (PMID: 16227571) Smith E.R. … Lucchesi J.C. (Mol. Cell. Biol. 2005) 3 64
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64

Products for MSL3P1 Gene

Sources for MSL3P1 Gene

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