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Aliases for MSH5-SAPCD1 Gene

Subcategory (RNA class) for MSH5-SAPCD1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for MSH5-SAPCD1 Gene

  • MSH5-SAPCD1 Readthrough (NMD Candidate) 2 3 5
  • MSH5-C6orf26 Readthrough (Non-Protein Coding) 2 3
  • MSH5-SAPCD1 Readthrough (Non-Protein Coding) 3
  • MSH5-C6orf26 3

External Ids for MSH5-SAPCD1 Gene

Previous HGNC Symbols for MSH5-SAPCD1 Gene

  • MSH5-C6orf26

Previous GeneCards Identifiers for MSH5-SAPCD1 Gene

  • GC06P031708
  • GC06P031714
  • GC06P031729
  • GC06P031764

Summaries for MSH5-SAPCD1 Gene

Entrez Gene Summary for MSH5-SAPCD1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring mutS homolog 5 (MSH5) and chromosome 6 open reading frame 26 (C6orf26) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]

GeneCards Summary for MSH5-SAPCD1 Gene

MSH5-SAPCD1 (MSH5-SAPCD1 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. Among its related pathways are Ovarian Infertility Genes. GO annotations related to this gene include mismatched DNA binding. An important paralog of this gene is MSH5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSH5-SAPCD1 Gene

Genomics for MSH5-SAPCD1 Gene

Genomic Location for MSH5-SAPCD1 Gene

Chromosome:
6
Start:
31,739,948 bp from pter
End:
31,764,851 bp from pter
Size:
24,904 bases
Orientation:
Plus strand

Genomic View for MSH5-SAPCD1 Gene

Genes around MSH5-SAPCD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSH5-SAPCD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSH5-SAPCD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for MSH5-SAPCD1 Gene

Proteins for MSH5-SAPCD1 Gene

  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024RCV8
    Recommended name:
    MutS homolog 5 (E. coli), isoform CRA_b
    Protein Accession:
    A0A024RCV8

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    851 amino acids
    Molecular mass:
    94719 Da
    Quaternary structure:
    No Data Available
  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0G2JJ70
    Recommended name:
    MutS protein homolog 5
    Protein Accession:
    A0A0G2JJ70

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    496 amino acids
    Molecular mass:
    54659 Da
    Quaternary structure:
    No Data Available
  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YEB2
    Recommended name:
    Protein MSH5-SAPCD1
    Protein Accession:
    H0YEB2

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    29 amino acids
    Molecular mass:
    3229 Da
    Quaternary structure:
    No Data Available
  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YF11
    Recommended name:
    Protein MSH5-SAPCD1
    Protein Accession:
    H0YF11

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28741 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSH5-SAPCD1 Gene

Proteomics data for MSH5-SAPCD1 Gene at MOPED

Post-translational modifications for MSH5-SAPCD1 Gene

No Post-translational modifications

Other Protein References for MSH5-SAPCD1 Gene

No data available for DME Specific Peptides for MSH5-SAPCD1 Gene

Domains & Families for MSH5-SAPCD1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MSH5-SAPCD1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSH5-SAPCD1 Gene

Function for MSH5-SAPCD1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MSH5-SAPCD1 Gene

Localization for MSH5-SAPCD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSH5-SAPCD1 Gene

Pathways & Interactions for MSH5-SAPCD1 Gene

SuperPathways for MSH5-SAPCD1 Gene

Superpath Contained pathways
1 Ovarian Infertility Genes
genes like me logo Genes that share pathways with MSH5-SAPCD1: view

Pathways by source for MSH5-SAPCD1 Gene

1 BioSystems pathway for MSH5-SAPCD1 Gene

Interacting Proteins for MSH5-SAPCD1 Gene

Gene Ontology (GO) - Biological Process for MSH5-SAPCD1 Gene

None

No data available for SIGNOR curated interactions for MSH5-SAPCD1 Gene

Drugs & Compounds for MSH5-SAPCD1 Gene

No Compound Related Data Available

Transcripts for MSH5-SAPCD1 Gene

mRNA/cDNA for MSH5-SAPCD1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MSH5-SAPCD1 Gene

No ASD Table

Relevant External Links for MSH5-SAPCD1 Gene

GeneLoc Exon Structure for
MSH5-SAPCD1
ECgene alternative splicing isoforms for
MSH5-SAPCD1

Expression for MSH5-SAPCD1 Gene

mRNA expression in normal human tissues for MSH5-SAPCD1 Gene

genes like me logo Genes that share expression patterns with MSH5-SAPCD1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MSH5-SAPCD1 Gene

Orthologs for MSH5-SAPCD1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MSH5-SAPCD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MSH5 36
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia MSH5 36
  • 87 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 78 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Msh5 36
  • 89 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
ManyToMany
-- 36
  • 60 (a)
ManyToMany
-- 36
  • 64 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 66 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii MSH5 36
  • 53 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea msh-5 36
  • 17 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MSH5 36
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToMany
Species with no ortholog for MSH5-SAPCD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for MSH5-SAPCD1 Gene

ENSEMBL:
Gene Tree for MSH5-SAPCD1 (if available)
TreeFam:
Gene Tree for MSH5-SAPCD1 (if available)

Paralogs for MSH5-SAPCD1 Gene

Paralogs for MSH5-SAPCD1 Gene

(4) SIMAP similar genes for MSH5-SAPCD1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with MSH5-SAPCD1: view

Variants for MSH5-SAPCD1 Gene

Relevant External Links for MSH5-SAPCD1 Gene

HapMap Linkage Disequilibrium report
MSH5-SAPCD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MSH5-SAPCD1 Gene

Disorders for MSH5-SAPCD1 Gene

Relevant External Links for MSH5-SAPCD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSH5-SAPCD1

No disorders were found for MSH5-SAPCD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSH5-SAPCD1 Gene

Publications for MSH5-SAPCD1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 67
  2. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) Harley J.B. … Kelly J.A. (Nat. Genet. 2008) 3
  3. Localization of eight additional genes in the human major histocompatibility complex, including the gene encoding the casein kinase II beta subunit (CSNK2B). (PMID: 8812450) Albertella M.R. … Campbell R.D. (Genomics 1996) 3
  4. Identification of multiple HTF-island associated genes in the human major histocompatibility complex class III region. (PMID: 2477242) Sargent C.A. … Campbell R.D. (EMBO J. 1989) 3

Products for MSH5-SAPCD1 Gene

Sources for MSH5-SAPCD1 Gene

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