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Aliases for MSH5-SAPCD1 Gene

Subcategory (RNA class) for MSH5-SAPCD1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for MSH5-SAPCD1 Gene

  • MSH5-SAPCD1 Readthrough (NMD Candidate) 2 3
  • MSH5-C6orf26 Readthrough (Non-Protein Coding) 2 3
  • MSH5-SAPCD1 Readthrough (Non-Protein Coding) 3
  • MSH5-C6orf26 3

External Ids for MSH5-SAPCD1 Gene

Previous Symbols for MSH5-SAPCD1 Gene

  • MSH5-C6orf26

Summaries for MSH5-SAPCD1 Gene

Entrez Gene Summary for MSH5-SAPCD1 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring mutS homolog 5 (MSH5) and chromosome 6 open reading frame 26 (C6orf26) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]

GeneCards Summary for MSH5-SAPCD1 Gene

MSH5-SAPCD1 (MSH5-SAPCD1 Readthrough (NMD Candidate)) is a RNA Gene, and belongs to ncRNA RNA class. Diseases associated with MSH5-SAPCD1 include systemic lupus erythematosus. Among its related pathways are Ovarian Infertility Genes. An important paralog of this gene is MSH5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSH5-SAPCD1 Gene

Genomics for MSH5-SAPCD1 Gene

Genomic Location for MSH5-SAPCD1 Gene

Start:
31,739,948 bp from pter
End:
31,764,851 bp from pter
Size:
24,904 bases
Orientation:
Plus strand

Genomic View for MSH5-SAPCD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MSH5-SAPCD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for MSH5-SAPCD1 Gene

Proteins for MSH5-SAPCD1 Gene

  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YEB2-H0YEB2
    Recommended name:
    Protein MSH5-SAPCD1
    Protein Accession:
    H0YEB2
    Secondary Accessions:

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    29 amino acids
    Molecular mass:
    3229 Da
    Quaternary structure:
    No Data Available
  • Protein details for MSH5-SAPCD1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YF11-H0YF11
    Recommended name:
    Protein MSH5-SAPCD1
    Protein Accession:
    H0YF11
    Secondary Accessions:

    Protein attributes for MSH5-SAPCD1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28741 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSH5-SAPCD1 Gene

Proteomics data for MSH5-SAPCD1 Gene at MOPED

Post-translational modifications for MSH5-SAPCD1 Gene

No Post-translational modifications

Other Protein References for MSH5-SAPCD1 Gene

No data available for DME Specific Peptides for MSH5-SAPCD1 Gene

Domains for MSH5-SAPCD1 Gene

Protein Domains for MSH5-SAPCD1 Gene

genes like me logo Genes that share domains with MSH5-SAPCD1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MSH5-SAPCD1 Gene

Function for MSH5-SAPCD1 Gene

Gene Ontology (GO) - Molecular Function for MSH5-SAPCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding --
GO:0030983 mismatched DNA binding --
genes like me logo Genes that share ontologies with MSH5-SAPCD1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MSH5-SAPCD1 Gene

Localization for MSH5-SAPCD1 Gene

No data available for Gene Ontology (GO) - Cellular Components for MSH5-SAPCD1 Gene

Pathways for MSH5-SAPCD1 Gene

SuperPathways for MSH5-SAPCD1 Gene

Superpath Contained pathways
1 Ovarian Infertility Genes
genes like me logo Genes that share pathways with MSH5-SAPCD1: view

Pathways by source for MSH5-SAPCD1 Gene

1 BioSystems pathway for MSH5-SAPCD1 Gene

Interacting Proteins for MSH5-SAPCD1 Gene

Gene Ontology (GO) - Biological Process for MSH5-SAPCD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006298 mismatch repair --
genes like me logo Genes that share ontologies with MSH5-SAPCD1: view

Transcripts for MSH5-SAPCD1 Gene

mRNA/cDNA for MSH5-SAPCD1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MSH5-SAPCD1 Gene

No ASD Table

Relevant External Links for MSH5-SAPCD1 Gene

GeneLoc Exon Structure for
MSH5-SAPCD1
ECgene alternative splicing isoforms for
MSH5-SAPCD1

Expression for MSH5-SAPCD1 Gene

mRNA expression in normal human tissues for MSH5-SAPCD1 Gene

genes like me logo Genes that share expressions with MSH5-SAPCD1: view

Orthologs for MSH5-SAPCD1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MSH5-SAPCD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia MSH5 37
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia MSH5 37
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Msh5 37
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 70 (a)
ManyToMany
-- 37
  • 60 (a)
ManyToMany
-- 37
  • 64 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 66 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii MSH5 37
  • 53 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea msh-5 37
  • 17 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MSH5 37
  • 24 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 41 (a)
OneToMany
Species with no ortholog for MSH5-SAPCD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for MSH5-SAPCD1 Gene

ENSEMBL:
Gene Tree for MSH5-SAPCD1 (if available)
TreeFam:
Gene Tree for MSH5-SAPCD1 (if available)

Paralogs for MSH5-SAPCD1 Gene

Paralogs for MSH5-SAPCD1 Gene

Selected SIMAP similar genes for MSH5-SAPCD1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with MSH5-SAPCD1: view

Variants for MSH5-SAPCD1 Gene

Relevant External Links for MSH5-SAPCD1 Gene

HapMap Linkage Disequilibrium report
MSH5-SAPCD1

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for MSH5-SAPCD1 Gene

Disorders for MSH5-SAPCD1 Gene

genes like me logo Genes that share disorders with MSH5-SAPCD1: view

No data available for UniProtKB/Swiss-Prot for MSH5-SAPCD1 Gene

Publications for MSH5-SAPCD1 Gene

  1. Identification of multiple HTF-island associated genes in the human major histocompatibility complex class III region. (PMID: 2477242) Sargent C.A. … Campbell R.D. (EMBO J. 1989) 3
  2. Localization of eight additional genes in the human major histocompatibility complex, including the gene encoding the casein kinase II beta subunit (CSNK2B). (PMID: 8812450) Albertella M.R. … Campbell R.D. (Genomics 1996) 3
  3. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) Harley J.B. … Kelly J.A. (Nat. Genet. 2008) 3
  4. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for MSH5-SAPCD1 Gene

Sources for MSH5-SAPCD1 Gene

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