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Aliases for MSANTD3-TMEFF1 Gene

Aliases for MSANTD3-TMEFF1 Gene

  • MSANTD3-TMEFF1 Readthrough 2 3
  • MSANTD3-TMEFF1 Fusion Protein 3
  • C9orf30-TMEFF1 Readthrough 2
  • C9orf30-TMEFF1 3
  • C9orf3-TMEFF1 3

External Ids for MSANTD3-TMEFF1 Gene

Previous Symbols for MSANTD3-TMEFF1 Gene

  • C9orf30-TMEFF1

Summaries for MSANTD3-TMEFF1 Gene

Entrez Gene Summary for MSANTD3-TMEFF1 Gene

  • This locus represents naturally occurring read-through transcription from the neighboring MSANTD3 (Myb/SANT-like DNA-binding domain containing 3) and TMEFF1 (transmembrane protein with EGF-like and two follistatin-like domains 1) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Aug 2013]

GeneCards Summary for MSANTD3-TMEFF1 Gene

MSANTD3-TMEFF1 (MSANTD3-TMEFF1 Readthrough) is a Protein Coding gene. An important paralog of this gene is TMEFF1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD3-TMEFF1 Gene

Genomics for MSANTD3-TMEFF1 Gene

Genomic Location for MSANTD3-TMEFF1 Gene

Start:
100,441,906 bp from pter
End:
100,577,636 bp from pter
Size:
135,731 bases
Orientation:
Plus strand

Genomic View for MSANTD3-TMEFF1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MSANTD3-TMEFF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD3-TMEFF1 Gene

No data available for Regulatory Elements for MSANTD3-TMEFF1 Gene

Proteins for MSANTD3-TMEFF1 Gene

  • Protein details for MSANTD3-TMEFF1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYJ0-A0A0A6YYJ0
    Recommended name:
    Protein MSANTD3-TMEFF1
    Protein Accession:
    A0A0A6YYJ0
    Secondary Accessions:

    Protein attributes for MSANTD3-TMEFF1 Gene

    Size:
    341 amino acids
    Molecular mass:
    37757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSANTD3-TMEFF1 Gene

Proteomics data for MSANTD3-TMEFF1 Gene at MOPED

Post-translational modifications for MSANTD3-TMEFF1 Gene

No Post-translational modifications

Other Protein References for MSANTD3-TMEFF1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MSANTD3-TMEFF1 Gene

Domains for MSANTD3-TMEFF1 Gene

Protein Domains for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share domains with MSANTD3-TMEFF1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MSANTD3-TMEFF1 Gene

Function for MSANTD3-TMEFF1 Gene

Gene Ontology (GO) - Molecular Function for MSANTD3-TMEFF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with MSANTD3-TMEFF1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MSANTD3-TMEFF1 Gene

Localization for MSANTD3-TMEFF1 Gene

No data available for Gene Ontology (GO) - Cellular Components for MSANTD3-TMEFF1 Gene

Pathways for MSANTD3-TMEFF1 Gene

SuperPathways for MSANTD3-TMEFF1 Gene

No Data Available

Interacting Proteins for MSANTD3-TMEFF1 Gene

Gene Ontology (GO) - Biological Process for MSANTD3-TMEFF1 Gene

None

No data available for Pathways by source for MSANTD3-TMEFF1 Gene

Transcripts for MSANTD3-TMEFF1 Gene

mRNA/cDNA for MSANTD3-TMEFF1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD3-TMEFF1 Gene

No ASD Table

Relevant External Links for MSANTD3-TMEFF1 Gene

GeneLoc Exon Structure for
MSANTD3-TMEFF1
ECgene alternative splicing isoforms for
MSANTD3-TMEFF1

Expression for MSANTD3-TMEFF1 Gene

mRNA expression in normal human tissues for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share expressions with MSANTD3-TMEFF1: view

Orthologs for MSANTD3-TMEFF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD3-TMEFF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEFF1 36
  • 99.78 (n)
  • 99.78 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 84 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 71 (a)
OneToMany
MSANTD3 36
  • 95.74 (n)
  • 98.9 (a)
mouse
(Mus musculus)
Mammalia Tmeff1 37
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 91 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 81 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii tmeff1a 37
  • 50 (a)
ManyToMany
tmeff1b 37
  • 50 (a)
ManyToMany
Species with no ortholog for MSANTD3-TMEFF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MSANTD3-TMEFF1 Gene

ENSEMBL:
Gene Tree for MSANTD3-TMEFF1 (if available)
TreeFam:
Gene Tree for MSANTD3-TMEFF1 (if available)

Paralogs for MSANTD3-TMEFF1 Gene

Paralogs for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share paralogs with MSANTD3-TMEFF1: view

Variants for MSANTD3-TMEFF1 Gene

Sequence variations from dbSNP and Humsavar for MSANTD3-TMEFF1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1212 -- 100,455,105(+) CACCA(A/T)CACCT intron-variant
rs1213 -- 100,455,114(+) CTCCA(C/T)GCATT intron-variant
rs1807194 -- 100,452,484(-) ATGGC(A/G)TGAAC intron-variant
rs1930245 -- 100,464,527(+) ccatg(G/T)tgata intron-variant
rs1930246 -- 100,469,158(+) AGGAC(G/T)TCATT intron-variant

Relevant External Links for MSANTD3-TMEFF1 Gene

HapMap Linkage Disequilibrium report
MSANTD3-TMEFF1

No data available for Structural Variations from Database of Genomic Variants (DGV) for MSANTD3-TMEFF1 Gene

Disorders for MSANTD3-TMEFF1 Gene

No disorders were found for MSANTD3-TMEFF1 Gene.

No data available for UniProtKB/Swiss-Prot for MSANTD3-TMEFF1 Gene

Publications for MSANTD3-TMEFF1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for MSANTD3-TMEFF1 Gene

Sources for MSANTD3-TMEFF1 Gene

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