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Aliases for MSANTD3-TMEFF1 Gene

Aliases for MSANTD3-TMEFF1 Gene

  • MSANTD3-TMEFF1 Readthrough 2 3 5
  • C9orf30-TMEFF1 Readthrough 2
  • C9orf30-TMEFF1 3
  • C9orf3-TMEFF1 3

External Ids for MSANTD3-TMEFF1 Gene

Previous HGNC Symbols for MSANTD3-TMEFF1 Gene

  • C9orf30-TMEFF1

Previous GeneCards Identifiers for MSANTD3-TMEFF1 Gene

  • GC09P103208

Summaries for MSANTD3-TMEFF1 Gene

Entrez Gene Summary for MSANTD3-TMEFF1 Gene

  • This locus represents naturally occurring read-through transcription from the neighboring MSANTD3 (Myb/SANT-like DNA-binding domain containing 3) and TMEFF1 (transmembrane protein with EGF-like and two follistatin-like domains 1) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Aug 2013]

GeneCards Summary for MSANTD3-TMEFF1 Gene

MSANTD3-TMEFF1 (MSANTD3-TMEFF1 Readthrough) is a Protein Coding gene. An important paralog of this gene is TMEFF1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD3-TMEFF1 Gene

Genomics for MSANTD3-TMEFF1 Gene

Regulatory Elements for MSANTD3-TMEFF1 Gene

Enhancers for MSANTD3-TMEFF1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MSANTD3-TMEFF1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MSANTD3-TMEFF1 Gene

100,441,906 bp from pter
100,577,636 bp from pter
135,731 bases
Plus strand

Genomic View for MSANTD3-TMEFF1 Gene

Genes around MSANTD3-TMEFF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSANTD3-TMEFF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSANTD3-TMEFF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD3-TMEFF1 Gene

Proteins for MSANTD3-TMEFF1 Gene

  • Protein details for MSANTD3-TMEFF1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein MSANTD3-TMEFF1
    Protein Accession:

    Protein attributes for MSANTD3-TMEFF1 Gene

    341 amino acids
    Molecular mass:
    37757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSANTD3-TMEFF1 Gene

Proteomics data for MSANTD3-TMEFF1 Gene at MOPED

Post-translational modifications for MSANTD3-TMEFF1 Gene

No Post-translational modifications

Other Protein References for MSANTD3-TMEFF1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MSANTD3-TMEFF1 Gene

Domains & Families for MSANTD3-TMEFF1 Gene

Protein Domains for MSANTD3-TMEFF1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MSANTD3-TMEFF1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSANTD3-TMEFF1 Gene

Function for MSANTD3-TMEFF1 Gene

Animal Model Products

CRISPR Products


No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MSANTD3-TMEFF1 Gene

Localization for MSANTD3-TMEFF1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSANTD3-TMEFF1 Gene

Pathways & Interactions for MSANTD3-TMEFF1 Gene

SuperPathways for MSANTD3-TMEFF1 Gene

No Data Available

Interacting Proteins for MSANTD3-TMEFF1 Gene

Gene Ontology (GO) - Biological Process for MSANTD3-TMEFF1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MSANTD3-TMEFF1 Gene

Drugs & Compounds for MSANTD3-TMEFF1 Gene

No Compound Related Data Available

Transcripts for MSANTD3-TMEFF1 Gene


(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD3-TMEFF1 Gene

No ASD Table

Relevant External Links for MSANTD3-TMEFF1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MSANTD3-TMEFF1 Gene

mRNA expression in normal human tissues for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share expression patterns with MSANTD3-TMEFF1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MSANTD3-TMEFF1 Gene

Orthologs for MSANTD3-TMEFF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD3-TMEFF1 Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia MSANTD3 35
  • 95.74 (n)
  • 98.9 (a)
-- 36
  • 71 (a)
(Pan troglodytes)
Mammalia TMEFF1 35
  • 99.78 (n)
  • 99.78 (a)
(Bos Taurus)
Mammalia -- 36
  • 84 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 76 (a)
(Mus musculus)
Mammalia Tmeff1 36
  • 83 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 91 (a)
(Gallus gallus)
Aves -- 36
  • 81 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 79 (a)
(Danio rerio)
Actinopterygii tmeff1a 36
  • 50 (a)
tmeff1b 36
  • 50 (a)
Species with no ortholog for MSANTD3-TMEFF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MSANTD3-TMEFF1 Gene

Gene Tree for MSANTD3-TMEFF1 (if available)
Gene Tree for MSANTD3-TMEFF1 (if available)

Paralogs for MSANTD3-TMEFF1 Gene

Paralogs for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share paralogs with MSANTD3-TMEFF1: view

Variants for MSANTD3-TMEFF1 Gene

Sequence variations from dbSNP and Humsavar for MSANTD3-TMEFF1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs7848761 -- 100,458,177(+) taggg(G/T)tgttg intron-variant
rs7851836 -- 100,458,384(+) aatcc(C/T)agcac intron-variant
rs7851943 -- 100,458,449(+) ggcca(A/T)catgg intron-variant
rs7858647 -- 100,457,900(+) GTCAG(G/T)AGGAG intron-variant
rs7859918 -- 100,458,222(+) cctgg(C/T)atata intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for MSANTD3-TMEFF1 Gene

Disorders for MSANTD3-TMEFF1 Gene

Relevant External Links for MSANTD3-TMEFF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MSANTD3-TMEFF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSANTD3-TMEFF1 Gene

Publications for MSANTD3-TMEFF1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 67

Products for MSANTD3-TMEFF1 Gene

Sources for MSANTD3-TMEFF1 Gene