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Aliases for MSANTD3-TMEFF1 Gene

Aliases for MSANTD3-TMEFF1 Gene

  • MSANTD3-TMEFF1 Readthrough 2 3 5
  • MSANTD3-TMEFF1 Fusion Protein 3
  • C9orf30-TMEFF1 Readthrough 2
  • C9orf30-TMEFF1 3
  • C9orf3-TMEFF1 3

External Ids for MSANTD3-TMEFF1 Gene

Previous HGNC Symbols for MSANTD3-TMEFF1 Gene

  • C9orf30-TMEFF1

Previous GeneCards Identifiers for MSANTD3-TMEFF1 Gene

  • GC09P103208

Summaries for MSANTD3-TMEFF1 Gene

Entrez Gene Summary for MSANTD3-TMEFF1 Gene

  • This locus represents naturally occurring read-through transcription from the neighboring MSANTD3 (Myb/SANT-like DNA-binding domain containing 3) and TMEFF1 (transmembrane protein with EGF-like and two follistatin-like domains 1) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Aug 2013]

GeneCards Summary for MSANTD3-TMEFF1 Gene

MSANTD3-TMEFF1 (MSANTD3-TMEFF1 Readthrough) is a Protein Coding gene. An important paralog of this gene is TMEFF1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD3-TMEFF1 Gene

Genomics for MSANTD3-TMEFF1 Gene

Regulatory Elements for MSANTD3-TMEFF1 Gene

Enhancers for MSANTD3-TMEFF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F100465 0.4 ENCODE 12.4 +23.6 23608 0.2 SOX13 SOX5 TBP FOXK2 RCOR2 THRB RXRB MSANTD3-TMEFF1 MSANTD3 TMEFF1
GH09F100475 0.6 Ensembl 11.7 +33.9 33895 0.4 RNF2 POLR2A MSANTD3-TMEFF1 MSANTD3 TMEFF1 MURC
GH09F100472 0.5 ENCODE 11.7 +32.0 32007 2.8 CBX3 KLF17 ARID4B SIN3A RAD21 GLIS2 EGR2 TFDP1 ZNF341 GLIS1 MSANTD3-TMEFF1 MSANTD3 TMEFF1 PLPPR1 MURC
GH09F100554 0.4 FANTOM5 11.2 +113.0 112971 0.1 TMEFF1 MURC MSANTD3-TMEFF1 MSANTD3 PLPPR1
GH09F100410 0.7 Ensembl ENCODE 11.1 -30.5 -30506 2.0 ARID4B SIN3A DMAP1 ZNF143 ZNF263 SP3 NFYC MXD4 ZNF518A KAT8 TMEFF1 TEX10 MSANTD3-TMEFF1 MURC MSANTD3 LOC105376177
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MSANTD3-TMEFF1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MSANTD3-TMEFF1 Gene

Chromosome:
9
Start:
100,441,906 bp from pter
End:
100,577,636 bp from pter
Size:
135,731 bases
Orientation:
Plus strand

Genomic View for MSANTD3-TMEFF1 Gene

Genes around MSANTD3-TMEFF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSANTD3-TMEFF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSANTD3-TMEFF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD3-TMEFF1 Gene

Proteins for MSANTD3-TMEFF1 Gene

  • Protein details for MSANTD3-TMEFF1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYJ0
    Recommended name:
    Protein MSANTD3-TMEFF1
    Protein Accession:
    A0A0A6YYJ0

    Protein attributes for MSANTD3-TMEFF1 Gene

    Size:
    341 amino acids
    Molecular mass:
    37757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MSANTD3-TMEFF1 Gene

Post-translational modifications for MSANTD3-TMEFF1 Gene

No Post-translational modifications

Other Protein References for MSANTD3-TMEFF1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MSANTD3-TMEFF1 Gene

Domains & Families for MSANTD3-TMEFF1 Gene

Protein Domains for MSANTD3-TMEFF1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MSANTD3-TMEFF1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MSANTD3-TMEFF1 Gene

Function for MSANTD3-TMEFF1 Gene

Animal Model Products

CRISPR Products

miRNA for MSANTD3-TMEFF1 Gene

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MSANTD3-TMEFF1 Gene

Localization for MSANTD3-TMEFF1 Gene

Gene Ontology (GO) - Cellular Components for MSANTD3-TMEFF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MSANTD3-TMEFF1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for MSANTD3-TMEFF1 Gene

Pathways & Interactions for MSANTD3-TMEFF1 Gene

SuperPathways for MSANTD3-TMEFF1 Gene

No Data Available

Interacting Proteins for MSANTD3-TMEFF1 Gene

Gene Ontology (GO) - Biological Process for MSANTD3-TMEFF1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSANTD3-TMEFF1 Gene

Transcripts for MSANTD3-TMEFF1 Gene

mRNA/cDNA for MSANTD3-TMEFF1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD3-TMEFF1 Gene

No ASD Table

Relevant External Links for MSANTD3-TMEFF1 Gene

GeneLoc Exon Structure for
MSANTD3-TMEFF1
ECgene alternative splicing isoforms for
MSANTD3-TMEFF1

Expression for MSANTD3-TMEFF1 Gene

mRNA expression in normal human tissues for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share expression patterns with MSANTD3-TMEFF1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MSANTD3-TMEFF1 Gene

Orthologs for MSANTD3-TMEFF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD3-TMEFF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TMEFF1 34
  • 99.78 (n)
dog
(Canis familiaris)
Mammalia MSANTD3 34
  • 95.74 (n)
-- 35
  • 71 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 91 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 84 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Tmeff1 35
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 76 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 81 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii tmeff1a 35
  • 50 (a)
ManyToMany
tmeff1b 35
  • 50 (a)
ManyToMany
Species where no ortholog for MSANTD3-TMEFF1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MSANTD3-TMEFF1 Gene

ENSEMBL:
Gene Tree for MSANTD3-TMEFF1 (if available)
TreeFam:
Gene Tree for MSANTD3-TMEFF1 (if available)

Paralogs for MSANTD3-TMEFF1 Gene

Paralogs for MSANTD3-TMEFF1 Gene

genes like me logo Genes that share paralogs with MSANTD3-TMEFF1: view

Variants for MSANTD3-TMEFF1 Gene

Sequence variations from dbSNP and Humsavar for MSANTD3-TMEFF1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs369755712 Uncertain significance 100,578,134(+) TGAGA(A/T)ATAAA intron-variant, downstream-variant-500B, utr-variant-5-prime
rs1000477 -- 100,511,487(-) AACTT(C/T)GCTCA intron-variant
rs1000478 -- 100,511,121(-) AAAAC(A/G)TAATA intron-variant
rs1000479 -- 100,510,956(-) CTTAG(A/T)GTTGG intron-variant
rs10114432 -- 100,443,395(+) ACTCC(A/G)TCTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MSANTD3-TMEFF1 Gene

Variant ID Type Subtype PubMed ID
esv3304229 CNV mobile element insertion 20981092
esv3306071 CNV mobile element insertion 20981092
esv3408205 CNV insertion 20981092
esv3408660 CNV insertion 20981092
esv3437174 CNV insertion 20981092
esv3621233 CNV loss 21293372
esv3621234 CNV loss 21293372
nsv475849 CNV novel sequence insertion 20440878
nsv614955 CNV loss 21841781
nsv6639 CNV insertion 18451855
nsv825012 CNV gain 20364138

Relevant External Links for MSANTD3-TMEFF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MSANTD3-TMEFF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MSANTD3-TMEFF1 Gene

Disorders for MSANTD3-TMEFF1 Gene

Relevant External Links for MSANTD3-TMEFF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSANTD3-TMEFF1

No disorders were found for MSANTD3-TMEFF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSANTD3-TMEFF1 Gene

Publications for MSANTD3-TMEFF1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64

Products for MSANTD3-TMEFF1 Gene

Sources for MSANTD3-TMEFF1 Gene

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