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Aliases for MSANTD3 Gene

Aliases for MSANTD3 Gene

  • Myb/SANT-Like DNA-Binding Domain Containing 3 2 3
  • C9orf30 3 4
  • Myb/SANT-Like DNA-Binding Domain-Containing Protein 3 3
  • Chromosome 9 Open Reading Frame 30 2
  • UPF0439 Protein C9orf30 3
  • L8 3

External Ids for MSANTD3 Gene

Previous HGNC Symbols for MSANTD3 Gene

  • C9orf30

Previous GeneCards Identifiers for MSANTD3 Gene

  • GC09P103190

Summaries for MSANTD3 Gene

GeneCards Summary for MSANTD3 Gene

MSANTD3 (Myb/SANT-Like DNA-Binding Domain Containing 3) is a Protein Coding gene. GO annotations related to this gene include identical protein binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD3 Gene

Genomics for MSANTD3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MSANTD3 Gene

100,427,156 bp from pter
100,451,734 bp from pter
24,579 bases
Plus strand

Genomic View for MSANTD3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MSANTD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD3 Gene

No data available for Regulatory Elements for MSANTD3 Gene

Proteins for MSANTD3 Gene

  • Protein details for MSANTD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Myb/SANT-like DNA-binding domain-containing protein 3
    Protein Accession:
    Secondary Accessions:
    • B2RC35
    • Q5T726
    • Q5T727
    • Q5T728

    Protein attributes for MSANTD3 Gene

    275 amino acids
    Molecular mass:
    32363 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAI12539.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI12540.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MSANTD3 Gene


neXtProt entry for MSANTD3 Gene

Proteomics data for MSANTD3 Gene at MOPED

Post-translational modifications for MSANTD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MSANTD3 Gene

Domains for MSANTD3 Gene

Protein Domains for MSANTD3 Gene


Graphical View of Domain Structure for InterPro Entry



  • Contains 1 Myb-like domain.
  • Belongs to the MSANTD3 family.
  • Contains 1 Myb-like domain.
  • Belongs to the MSANTD3 family.
genes like me logo Genes that share domains with MSANTD3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for MSANTD3 Gene

Function for MSANTD3 Gene

Gene Ontology (GO) - Molecular Function for MSANTD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042802 identical protein binding IEA --
genes like me logo Genes that share ontologies with MSANTD3: view

Animal Model Products

CRISPR Products

miRNA for MSANTD3 Gene

miRTarBase miRNAs that target MSANTD3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MSANTD3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for MSANTD3 Gene

Localization for MSANTD3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSANTD3 Gene

Pathways for MSANTD3 Gene

SuperPathways for MSANTD3 Gene

No Data Available

Interacting Proteins for MSANTD3 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
Selected Interacting proteins: ENSP00000378506 Q96H12-MSD3_HUMAN for MSANTD3 Gene via STRING MINT

Gene Ontology (GO) - Biological Process for MSANTD3 Gene


No data available for Pathways by source for MSANTD3 Gene

Transcripts for MSANTD3 Gene

Unigene Clusters for MSANTD3 Gene

Myb/SANT-like DNA-binding domain containing 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MSANTD3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD3 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP2: -
SP3: - - - - -
SP5: - -

Relevant External Links for MSANTD3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MSANTD3 Gene

mRNA expression in normal human tissues for MSANTD3 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MSANTD3 Gene

SOURCE GeneReport for Unigene cluster for MSANTD3 Gene Hs.530272

mRNA Expression by UniProt/SwissProt for MSANTD3 Gene

Tissue specificity: Expressed in brain.
genes like me logo Genes that share expressions with MSANTD3: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Expression partners for MSANTD3 Gene

Orthologs for MSANTD3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD3 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia MSANTD3 35
  • 95.52 (n)
  • 98.91 (a)
  • 73 (a)
(Mus musculus)
Mammalia Msantd3 35
  • 86.67 (n)
  • 96.36 (a)
Msantd3 16
Msantd3 36
  • 96 (a)
(Rattus norvegicus)
Mammalia Msantd3 35
  • 87.39 (n)
  • 97.45 (a)
(Monodelphis domestica)
Mammalia MSANTD3 36
  • 94 (a)
(Ornithorhynchus anatinus)
Mammalia MSANTD3 36
  • 88 (a)
(Pan troglodytes)
Mammalia TMEFF1 36
  • 100 (a)
(Gallus gallus)
Aves C2H9ORF30 35
  • 80.44 (n)
  • 91.14 (a)
  • 68 (a)
(Anolis carolinensis)
Reptilia MSANTD3 36
  • 88 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia msantd3 35
  • 73.09 (n)
  • 74.55 (a)
Str.2438 35
African clawed frog
(Xenopus laevis)
Amphibia mgc17337-prov 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
Species with no ortholog for MSANTD3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MSANTD3 Gene

Gene Tree for MSANTD3 (if available)
Gene Tree for MSANTD3 (if available)

Paralogs for MSANTD3 Gene Pseudogenes for MSANTD3 Gene

genes like me logo Genes that share paralogs with MSANTD3: view

No data available for Paralogs for MSANTD3 Gene

Variants for MSANTD3 Gene

Sequence variations from dbSNP and Humsavar for MSANTD3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1016176 -- 100,437,712(-) GACCA(C/T)TAATA intron-variant
rs1016177 -- 100,437,683(-) TATTT(A/C)ATCAC intron-variant
rs1041567 -- 100,429,001(-) CTGCA(C/G)ATGGT intron-variant, upstream-variant-2KB
rs2417178 -- 100,437,243(+) TGGGG(A/G)AAGAG intron-variant
rs4743397 -- 100,426,475(+) ttaag(C/T)ggttt upstream-variant-2KB

Relevant External Links for MSANTD3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MSANTD3 Gene

Disorders for MSANTD3 Gene

No disorders were found for MSANTD3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for MSANTD3 Gene

Publications for MSANTD3 Gene

  1. Suppression subtractive hybridization and expression profiling identifies a unique set of genes overexpressed in non-small-cell lung cancer. (PMID: 15334068) Petroziello J. … Carter P. (Oncogene 2004) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for MSANTD3 Gene

Sources for MSANTD3 Gene

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