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Aliases for MSANTD3 Gene

Aliases for MSANTD3 Gene

  • Myb/SANT DNA Binding Domain Containing 3 2 3
  • Myb/SANT-Like DNA-Binding Domain Containing 3 2 3 5
  • C9orf30 3 4
  • Chromosome 9 Open Reading Frame 30 2
  • UPF0439 Protein C9orf30 3
  • L8 3

External Ids for MSANTD3 Gene

Previous HGNC Symbols for MSANTD3 Gene

  • C9orf30

Previous GeneCards Identifiers for MSANTD3 Gene

  • GC09P103190

Summaries for MSANTD3 Gene

GeneCards Summary for MSANTD3 Gene

MSANTD3 (Myb/SANT DNA Binding Domain Containing 3) is a Protein Coding gene. GO annotations related to this gene include identical protein binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD3 Gene

Genomics for MSANTD3 Gene

Regulatory Elements for MSANTD3 Gene

Promoters for MSANTD3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MSANTD3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MSANTD3 Gene

Chromosome:
9
Start:
100,427,156 bp from pter
End:
100,451,734 bp from pter
Size:
24,579 bases
Orientation:
Plus strand

Genomic View for MSANTD3 Gene

Genes around MSANTD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSANTD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSANTD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD3 Gene

Proteins for MSANTD3 Gene

  • Protein details for MSANTD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96H12-MSD3_HUMAN
    Recommended name:
    Myb/SANT-like DNA-binding domain-containing protein 3
    Protein Accession:
    Q96H12
    Secondary Accessions:
    • B2RC35
    • Q5T726
    • Q5T727
    • Q5T728

    Protein attributes for MSANTD3 Gene

    Size:
    275 amino acids
    Molecular mass:
    32363 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI12539.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI12540.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MSANTD3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MSANTD3 Gene

Proteomics data for MSANTD3 Gene at MOPED

Post-translational modifications for MSANTD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MSANTD3 Gene

Domains & Families for MSANTD3 Gene

Gene Families for MSANTD3 Gene

Protein Domains for MSANTD3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MSANTD3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96H12

UniProtKB/Swiss-Prot:

MSD3_HUMAN :
  • Contains 1 Myb-like domain.
  • Belongs to the MSANTD3 family.
Domain:
  • Contains 1 Myb-like domain.
Family:
  • Belongs to the MSANTD3 family.
genes like me logo Genes that share domains with MSANTD3: view

Function for MSANTD3 Gene

Animal Model Products

CRISPR Products

miRNA for MSANTD3 Gene

miRTarBase miRNAs that target MSANTD3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MSANTD3 Gene

Localization for MSANTD3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MSANTD3 Gene COMPARTMENTS Subcellular localization image for MSANTD3 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MSANTD3 Gene

Pathways & Interactions for MSANTD3 Gene

SuperPathways for MSANTD3 Gene

No Data Available

Interacting Proteins for MSANTD3 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000378506%0d%0a9606.ENSP00000385269%0d%0a9606.ENSP00000403397%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: Q96H12-MSD3_HUMAN ENSP00000378506 for MSANTD3 Gene via MINT STRING

Gene Ontology (GO) - Biological Process for MSANTD3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSANTD3 Gene

Drugs & Compounds for MSANTD3 Gene

No Compound Related Data Available

Transcripts for MSANTD3 Gene

Unigene Clusters for MSANTD3 Gene

Myb/SANT-like DNA-binding domain containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD3 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1:
SP2: -
SP3: - - - - -
SP4:
SP5: - -

Relevant External Links for MSANTD3 Gene

GeneLoc Exon Structure for
MSANTD3
ECgene alternative splicing isoforms for
MSANTD3

Expression for MSANTD3 Gene

mRNA expression in normal human tissues for MSANTD3 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MSANTD3 Gene



SOURCE GeneReport for Unigene cluster for MSANTD3 Gene Hs.530272

mRNA Expression by UniProt/SwissProt for MSANTD3 Gene

Q96H12-MSD3_HUMAN
Tissue specificity: Expressed in brain.
genes like me logo Genes that share expression patterns with MSANTD3: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Protein tissue co-expression partners for MSANTD3 Gene

Orthologs for MSANTD3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MSANTD3 35
  • 95.52 (n)
  • 98.91 (a)
MSANTD3 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Msantd3 35
  • 86.67 (n)
  • 96.36 (a)
Msantd3 16
Msantd3 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Msantd3 35
  • 87.39 (n)
  • 97.45 (a)
oppossum
(Monodelphis domestica)
Mammalia MSANTD3 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MSANTD3 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TMEFF1 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves C2H9ORF30 35
  • 80.44 (n)
  • 91.14 (a)
MSANTD3 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MSANTD3 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia msantd3 35
  • 73.09 (n)
  • 74.55 (a)
Str.2438 35
African clawed frog
(Xenopus laevis)
Amphibia mgc17337-prov 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToOne
Species with no ortholog for MSANTD3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MSANTD3 Gene

ENSEMBL:
Gene Tree for MSANTD3 (if available)
TreeFam:
Gene Tree for MSANTD3 (if available)

Paralogs for MSANTD3 Gene

Pseudogenes.org Pseudogenes for MSANTD3 Gene

genes like me logo Genes that share paralogs with MSANTD3: view

No data available for Paralogs for MSANTD3 Gene

Variants for MSANTD3 Gene

Sequence variations from dbSNP and Humsavar for MSANTD3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1016176 -- 100,437,712(-) GACCA(C/T)TAATA intron-variant
rs1016177 -- 100,437,683(-) TATTT(A/C)ATCAC intron-variant
rs2417178 -- 100,437,243(+) TGGGG(A/G)AAGAG intron-variant
rs4743397 -- 100,426,475(+) ttaag(C/T)ggttt upstream-variant-2KB
rs4743398 -- 100,433,431(+) gtggc(A/G)tgatc intron-variant

Variation tolerance for MSANTD3 Gene

Residual Variation Intolerance Score: 46.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.27; 52.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MSANTD3 Gene

HapMap Linkage Disequilibrium report
MSANTD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MSANTD3 Gene

Disorders for MSANTD3 Gene

Relevant External Links for MSANTD3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSANTD3

No disorders were found for MSANTD3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSANTD3 Gene

Publications for MSANTD3 Gene

  1. Suppression subtractive hybridization and expression profiling identifies a unique set of genes overexpressed in non-small-cell lung cancer. (PMID: 15334068) Petroziello J. … Carter P. (Oncogene 2004) 3 4 67
  2. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3
  3. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for MSANTD3 Gene

Sources for MSANTD3 Gene

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