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Aliases for MSANTD1 Gene

Aliases for MSANTD1 Gene

  • Myb/SANT-Like DNA-Binding Domain Containing 1 2 3
  • C4orf44 3 4
  • Myb/SANT-Like DNA-Binding Domain-Containing Protein 1 3
  • Chromosome 4 Open Reading Frame 44 2

External Ids for MSANTD1 Gene

Previous HGNC Symbols for MSANTD1 Gene

  • C4orf44

Summaries for MSANTD1 Gene

GeneCards Summary for MSANTD1 Gene

MSANTD1 (Myb/SANT-Like DNA-Binding Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD1 Gene

Genomics for MSANTD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MSANTD1 Gene

Start:
3,244,369 bp from pter
End:
3,271,738 bp from pter
Size:
27,370 bases
Orientation:
Plus strand

Genomic View for MSANTD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MSANTD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD1 Gene

No data available for Regulatory Elements for MSANTD1 Gene

Proteins for MSANTD1 Gene

  • Protein details for MSANTD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTZ1-MSD1_HUMAN
    Recommended name:
    Myb/SANT-like DNA-binding domain-containing protein 1
    Protein Accession:
    Q6ZTZ1
    Secondary Accessions:
    • C9J6V0

    Protein attributes for MSANTD1 Gene

    Size:
    278 amino acids
    Molecular mass:
    31632 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86436.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for MSANTD1 Gene

Proteomics data for MSANTD1 Gene at MOPED

Post-translational modifications for MSANTD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MSANTD1 Gene

No data available for DME Specific Peptides for MSANTD1 Gene

Domains for MSANTD1 Gene

Protein Domains for MSANTD1 Gene

Graphical View of Domain Structure for InterPro Entry

Q6ZTZ1

UniProtKB/Swiss-Prot:

MSD1_HUMAN :
  • Q6ZTZ1
Domain:
  • Contains 1 Myb-like domain.
genes like me logo Genes that share domains with MSANTD1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for MSANTD1 Gene

Function for MSANTD1 Gene

Animal Model Products

CRISPR Products

miRNA for MSANTD1 Gene

miRTarBase miRNAs that target MSANTD1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for MSANTD1 Gene

Localization for MSANTD1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MSANTD1 Gene

Pathways for MSANTD1 Gene

SuperPathways for MSANTD1 Gene

No Data Available

Interacting Proteins for MSANTD1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000411584%0d%0a9606.ENSP00000273375%0d%0a
Selected Interacting proteins: ENSP00000411584 for MSANTD1 Gene via STRING

Symbol External ID(s) Details
RABL3

Gene Ontology (GO) - Biological Process for MSANTD1 Gene

None

No data available for Pathways by source for MSANTD1 Gene

Transcripts for MSANTD1 Gene

mRNA/cDNA for MSANTD1 Gene

Unigene Clusters for MSANTD1 Gene

Myb/SANT-like DNA-binding domain containing 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MSANTD1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MSANTD1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD1 Gene

No ASD Table

Relevant External Links for MSANTD1 Gene

GeneLoc Exon Structure for
MSANTD1
ECgene alternative splicing isoforms for
MSANTD1

Expression for MSANTD1 Gene

mRNA expression in normal human tissues for MSANTD1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MSANTD1 Gene

SOURCE GeneReport for Unigene cluster for MSANTD1 Gene Hs.442291

genes like me logo Genes that share expressions with MSANTD1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MSANTD1 Gene

Orthologs for MSANTD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MSANTD1 35
  • 99.76 (n)
  • 100 (a)
MSANTD1 36
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MSANTD1 35
  • 92.56 (n)
  • 88.46 (a)
MSANTD1 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MSANTD1 35
  • 92.82 (n)
  • 91.15 (a)
MSANTD1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Msantd1 35
  • 89.33 (n)
  • 89.21 (a)
Msantd1 16
Msantd1 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MSANTD1 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Msantd1 35
  • 90.05 (n)
  • 89.93 (a)
chicken
(Gallus gallus)
Aves C4H4ORF44 35
  • 69.6 (n)
  • 78.54 (a)
MSANTD1 36
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MSANTD1 36
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia msantd1 35
  • 74.24 (n)
  • 75.7 (a)
zebrafish
(Danio rerio)
Actinopterygii BX324131.3 36
  • 49 (a)
OneToOne
LOC798497 35
  • 58.91 (n)
  • 52.24 (a)
Species with no ortholog for MSANTD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MSANTD1 Gene

ENSEMBL:
Gene Tree for MSANTD1 (if available)
TreeFam:
Gene Tree for MSANTD1 (if available)

Paralogs for MSANTD1 Gene

No data available for Paralogs for MSANTD1 Gene

Variants for MSANTD1 Gene

Sequence variations from dbSNP and Humsavar for MSANTD1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs108850 -- 3,256,509(+) CCCAG(C/G)GACCT utr-variant-3-prime, intron-variant
rs362266 -- 3,257,905(-) AAACT(C/G)AGGCC intron-variant
rs362279 -- 3,258,345(-) AGCAG(C/T)GACTC intron-variant
rs362280 -- 3,258,330(-) TGTGC(C/T)GTCCC intron-variant
rs362281 -- 3,258,092(-) GCCAG(C/T)CTCAG intron-variant

Relevant External Links for MSANTD1 Gene

HapMap Linkage Disequilibrium report
MSANTD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MSANTD1 Gene

Disorders for MSANTD1 Gene

No disorders were found for MSANTD1 Gene.

No data available for UniProtKB/Swiss-Prot for MSANTD1 Gene

Publications for MSANTD1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4

Products for MSANTD1 Gene

Sources for MSANTD1 Gene

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