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Aliases for MSANTD1 Gene

Aliases for MSANTD1 Gene

  • Myb/SANT DNA Binding Domain Containing 1 2 3
  • Myb/SANT-Like DNA-Binding Domain Containing 1 2 3 5
  • C4orf44 3 4
  • Chromosome 4 Open Reading Frame 44 2

External Ids for MSANTD1 Gene

Previous HGNC Symbols for MSANTD1 Gene

  • C4orf44

Summaries for MSANTD1 Gene

GeneCards Summary for MSANTD1 Gene

MSANTD1 (Myb/SANT DNA Binding Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MSANTD1 Gene

Genomics for MSANTD1 Gene

Genomic Location for MSANTD1 Gene

Chromosome:
4
Start:
3,241,598 bp from pter
End:
3,271,738 bp from pter
Size:
30,141 bases
Orientation:
Plus strand

Genomic View for MSANTD1 Gene

Genes around MSANTD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MSANTD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MSANTD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MSANTD1 Gene

No data available for Regulatory Elements for MSANTD1 Gene

Proteins for MSANTD1 Gene

  • Protein details for MSANTD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTZ1-MSD1_HUMAN
    Recommended name:
    Myb/SANT-like DNA-binding domain-containing protein 1
    Protein Accession:
    Q6ZTZ1
    Secondary Accessions:
    • C9J6V0

    Protein attributes for MSANTD1 Gene

    Size:
    278 amino acids
    Molecular mass:
    31632 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86436.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for MSANTD1 Gene

Proteomics data for MSANTD1 Gene at MOPED

Post-translational modifications for MSANTD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MSANTD1 Gene

No data available for DME Specific Peptides for MSANTD1 Gene

Domains & Families for MSANTD1 Gene

Gene Families for MSANTD1 Gene

Protein Domains for MSANTD1 Gene

Graphical View of Domain Structure for InterPro Entry

Q6ZTZ1

UniProtKB/Swiss-Prot:

MSD1_HUMAN :
  • Contains 1 Myb-like domain.
Domain:
  • Contains 1 Myb-like domain.
genes like me logo Genes that share domains with MSANTD1: view

No data available for Suggested Antigen Peptide Sequences for MSANTD1 Gene

Function for MSANTD1 Gene

Phenotypes for MSANTD1 Gene

MGI mutant phenotypes for MSANTD1:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with MSANTD1: view

Animal Models for MSANTD1 Gene

MGI Knock Outs for MSANTD1:

Animal Model Products

CRISPR Products

miRNA for MSANTD1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MSANTD1 Gene

Localization for MSANTD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MSANTD1 Gene COMPARTMENTS Subcellular localization image for MSANTD1 gene
Compartment Confidence
nucleus 4
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MSANTD1 Gene

Pathways & Interactions for MSANTD1 Gene

SuperPathways for MSANTD1 Gene

No Data Available

Interacting Proteins for MSANTD1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000411584%0d%0a9606.ENSP00000273375%0d%0a
Selected Interacting proteins: ENSP00000411584 for MSANTD1 Gene via STRING

Symbol External ID(s) Details
RABL3

Gene Ontology (GO) - Biological Process for MSANTD1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MSANTD1 Gene

Drugs & Compounds for MSANTD1 Gene

No Compound Related Data Available

Transcripts for MSANTD1 Gene

mRNA/cDNA for MSANTD1 Gene

Unigene Clusters for MSANTD1 Gene

Myb/SANT-like DNA-binding domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MSANTD1 Gene

No ASD Table

Relevant External Links for MSANTD1 Gene

GeneLoc Exon Structure for
MSANTD1
ECgene alternative splicing isoforms for
MSANTD1

Expression for MSANTD1 Gene

mRNA expression in normal human tissues for MSANTD1 Gene

Protein differential expression in normal tissues from HIPED for MSANTD1 Gene

This gene is overexpressed in Pancreas (56.0) and Retina (13.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for MSANTD1 Gene



SOURCE GeneReport for Unigene cluster for MSANTD1 Gene Hs.442291

genes like me logo Genes that share expression patterns with MSANTD1: view

Protein tissue co-expression partners for MSANTD1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MSANTD1 Gene

Orthologs for MSANTD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MSANTD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MSANTD1 35
  • 92.56 (n)
  • 88.46 (a)
MSANTD1 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MSANTD1 35
  • 92.82 (n)
  • 91.15 (a)
MSANTD1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Msantd1 35
  • 89.33 (n)
  • 89.21 (a)
Msantd1 16
Msantd1 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia MSANTD1 35
  • 99.76 (n)
  • 100 (a)
MSANTD1 36
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Msantd1 35
  • 90.05 (n)
  • 89.93 (a)
oppossum
(Monodelphis domestica)
Mammalia MSANTD1 36
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves C4H4ORF44 35
  • 69.6 (n)
  • 78.54 (a)
MSANTD1 36
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MSANTD1 36
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia msantd1 35
  • 74.24 (n)
  • 75.7 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC798497 35
  • 58.91 (n)
  • 52.24 (a)
BX324131.3 36
  • 49 (a)
OneToOne
Species with no ortholog for MSANTD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MSANTD1 Gene

ENSEMBL:
Gene Tree for MSANTD1 (if available)
TreeFam:
Gene Tree for MSANTD1 (if available)

Paralogs for MSANTD1 Gene

No data available for Paralogs for MSANTD1 Gene

Variants for MSANTD1 Gene

Sequence variations from dbSNP and Humsavar for MSANTD1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs108850 -- 3,256,509(+) CCCAG(C/G)GACCT intron-variant, utr-variant-3-prime
rs916205 -- 3,256,194(-) CCTGG(C/T)CTGTG intron-variant, utr-variant-3-prime
rs362266 -- 3,257,905(-) AAACT(C/G)AGGCC intron-variant
rs362279 -- 3,258,345(-) AGCAG(C/T)GACTC intron-variant
rs362280 -- 3,258,330(-) TGTGC(C/T)GTCCC intron-variant

Variation tolerance for MSANTD1 Gene

Residual Variation Intolerance Score: 44.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.04; 80.23% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MSANTD1 Gene

HapMap Linkage Disequilibrium report
MSANTD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MSANTD1 Gene

Disorders for MSANTD1 Gene

Relevant External Links for MSANTD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MSANTD1

No disorders were found for MSANTD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MSANTD1 Gene

Publications for MSANTD1 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for MSANTD1 Gene

Sources for MSANTD1 Gene

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