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Aliases for MS4A4E Gene

Aliases for MS4A4E Gene

  • Membrane Spanning 4-Domains A4E 2 3 5
  • Membrane-Spanning 4-Domains, Subfamily A, Member 4E 2

External Ids for MS4A4E Gene

Previous GeneCards Identifiers for MS4A4E Gene

  • GC11U990623
  • GC11M059732
  • GC11M059969
  • GC11M056316

Summaries for MS4A4E Gene

Entrez Gene Summary for MS4A4E Gene

  • Most MS4A genes, including MS4A4E, encode proteins with at least 4 potential transmembrane domains and N- and C-terminal cytoplasmic domains encoded by distinct exons.[supplied by OMIM, Apr 2004]

GeneCards Summary for MS4A4E Gene

MS4A4E (Membrane Spanning 4-Domains A4E) is a Protein Coding gene. An important paralog of this gene is MS4A4A.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MS4A4E Gene

Genomics for MS4A4E Gene

Regulatory Elements for MS4A4E Gene

Enhancers for MS4A4E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F060241 1.3 Ensembl ENCODE 0.8 +0.5 514 1.6 ARID1B HDAC1 TAL1 HMBOX1 GC11M060235 MS4A4E
GH11F060240 0.5 Ensembl 0.8 +2.2 2214 1.0 MS4A2 MS4A6A GC11M060235 MS4A4E
GH11F060251 0.8 Ensembl ENCODE 0.4 -9.1 -9076 1.6 CTCF WRNIP1 TRIM22 REST RAD21 CHAMP1 ZNF316 ZNF143 SMC3 ZBTB33 MS4A6E OOSP2 MS4A6A MS4A4A MS4A4E
GH11F060265 0.7 ENCODE 0.3 -22.7 -22709 0.2 CTCF ZNF654 STAT1 TRIM22 REST RAD21 ZNF143 SMC3 FOS MIXL1 MS4A4A MS4A4E
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MS4A4E on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the MS4A4E gene promoter:

Genomic Location for MS4A4E Gene

60,201,253 bp from pter
60,243,114 bp from pter
41,862 bases
Minus strand

Genomic View for MS4A4E Gene

Genes around MS4A4E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MS4A4E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MS4A4E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MS4A4E Gene

Proteins for MS4A4E Gene

  • Protein details for MS4A4E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative membrane-spanning 4-domains subfamily A member 4E
    Protein Accession:
    Secondary Accessions:
    • Q3C1W1
    • Q3C1W3
    • Q3C1W4

    Protein attributes for MS4A4E Gene

    132 amino acids
    Molecular mass:
    15209 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAL07363.1; Type=Miscellaneous discrepancy; Note=Intron retention. The entire sequence corresponds to part of an intron.; Evidence={ECO:0000305};

    Alternative splice isoforms for MS4A4E Gene


neXtProt entry for MS4A4E Gene

Post-translational modifications for MS4A4E Gene

No Post-translational modifications

No data available for DME Specific Peptides for MS4A4E Gene

Domains & Families for MS4A4E Gene

Gene Families for MS4A4E Gene

Protein Domains for MS4A4E Gene


Suggested Antigen Peptide Sequences for MS4A4E Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the MS4A family.
  • Belongs to the MS4A family.
genes like me logo Genes that share domains with MS4A4E: view

Function for MS4A4E Gene

Animal Model Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MS4A4E Gene

Localization for MS4A4E Gene

Subcellular locations from UniProtKB/Swiss-Prot for MS4A4E Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for MS4A4E Gene COMPARTMENTS Subcellular localization image for MS4A4E gene
Compartment Confidence
plasma membrane 2
cytosol 1
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for MS4A4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MS4A4E: view

Pathways & Interactions for MS4A4E Gene

SuperPathways for MS4A4E Gene

No Data Available

Interacting Proteins for MS4A4E Gene

Gene Ontology (GO) - Biological Process for MS4A4E Gene


No data available for Pathways by source and SIGNOR curated interactions for MS4A4E Gene

Transcripts for MS4A4E Gene

mRNA/cDNA for MS4A4E Gene

(11) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MS4A4E Gene

Membrane-spanning 4-domains, subfamily A, member 4E:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MS4A4E Gene

No ASD Table

Relevant External Links for MS4A4E Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MS4A4E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MS4A4E Gene

mRNA differential expression in normal tissues according to GTEx for MS4A4E Gene

This gene is overexpressed in Spleen (x5.8).

NURSA nuclear receptor signaling pathways regulating expression of MS4A4E Gene:


SOURCE GeneReport for Unigene cluster for MS4A4E Gene:

genes like me logo Genes that share expression patterns with MS4A4E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MS4A4E Gene

Orthologs for MS4A4E Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MS4A4E Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia MS4A4E 35
  • 97 (a)
Species where no ortholog for MS4A4E was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MS4A4E Gene

Gene Tree for MS4A4E (if available)
Gene Tree for MS4A4E (if available)

Paralogs for MS4A4E Gene

Paralogs for MS4A4E Gene

(2) SIMAP similar genes for MS4A4E Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with MS4A4E: view

Variants for MS4A4E Gene

Sequence variations from dbSNP and Humsavar for MS4A4E Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1019671 -- 60,240,678(+) TTTCA(C/T)TCCTA intron-variant
rs10628170 -- 60,206,485(+) ATATA(-/TG)TATGT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs10631023 -- 60,204,396(+) TGCTC(-/TT)GTCTG intron-variant, utr-variant-3-prime
rs10635685 -- 60,206,486(+) TATAT(-/GT/GTAT/GTATAT/GTATATATATATACAC)ATGTA intron-variant, nc-transcript-variant, utr-variant-3-prime
rs10696106 -- 60,206,529(+) ACACA(-/CA)GAGGT intron-variant, nc-transcript-variant, utr-variant-3-prime

Variation tolerance for MS4A4E Gene

Gene Damage Index Score: 3.48; 55.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MS4A4E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MS4A4E Gene

Disorders for MS4A4E Gene

Relevant External Links for MS4A4E

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MS4A4E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MS4A4E Gene

Publications for MS4A4E Gene

  1. Structural organization of the human MS4A gene cluster on chromosome 11q12. (PMID: 11486273) Liang Y. … Tedder T.F. (Immunogenetics 2001) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk. (PMID: 26449541) Ebbert M.T. … Kauwe J.S. (Alzheimers Dement 2016) 3 64
  4. Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy. (PMID: 23118302) Chu A.Y. … Ridker P.M. (Circ Cardiovasc Genet 2012) 3 64
  5. Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease. (PMID: 21460840) Hollingworth P. … Williams J. (Nat. Genet. 2011) 3 64

Products for MS4A4E Gene

Sources for MS4A4E Gene

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