MS4A3 Gene
protein-coding GIFtS: 53
GCID: GC11P059824
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|
membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic...
(Previous symbol: CD20L)
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Aliases
for MS4A3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Membrane-Spanning 4-Domains, Subfamily A, Member 3 (HematopoieticCell-Specific)1 2 | | Hematopoietic Cell 4 Transmembrane Protein2 | | CD20L1 2 3 5 | | IgE Receptor Beta Chain2 | | HTM41 2 3 5 | | IgE Receptor Beta Subunit2 | | Hematopoietic-Specific Transmembrane Protein 42 3 | | Membrane-Spanning 4-Domains Subfamily A Member 32 | | CD20 Antigen-Like Protein2 3 | | HTm43 | | CD20 Antigen Homolog2 | | |
Export aliases for MS4A3 gene to outside databasesPrevious GC identifers: GC11P062218 GC11P061337 GC11P060074 GC11P059599 GC11P059580 GC11P056172 |
Summaries
for MS4A3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for MS4A3:
This gene encodes a member of the membrane-spanning 4A gene family. Members of this protein family are characterized bycommon structural features and similar intron/exon splice boundaries and display unique expression patterns amonghematopoietic cells and nonlymphoid tissues. This family member likely plays a role in signal transduction and mayfunction as a subunit associated with receptor complexes. The gene encoding this protein is localized to 11q12, amonga cluster of related family members. Alternative splicing may result in multiple transcript variants; however, not allvariants have been fully described. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: MS4A3_HUMAN, Q96HJ5Function: Hematopoietic modulator for the G1-S cell cycle transition. Modulates the level of phosphorylation ofcyclin-dependent kinase 2 (CDK2) through its direct binding to cyclin-dependent kinase inhibitor 3 (CDKN3/KAP)
Gene Wiki entry for MS4A3
|
Genomic Views
for MS4A3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_167190.1
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MS4A3 gene promoter:
TBP C/EBPbeta AML1a IRF-1 Nkx5-1 POU3F2 FOXL1 RORalpha2 IRF-2 Zic1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MS4A3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MS4A3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q12.1 Ensembl cytogenetic band: 11q12.1 HGNC cytogenetic band: 11q12-q13.1MS4A3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P059824: view genomic region
(about GC identifiers)
Start:
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59,824,060 bp from pter |
End:
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59,838,601 bp from pter |
Size:
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14,542 bases |
Orientation:
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plus strand |
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Proteins
for MS4A3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: MS4A3_HUMAN, Q96HJ5 (See
protein sequence)Recommended Name: Membrane-spanning 4-domains subfamily A member 3 Size: 214 amino acids; 22933 Da
Subunit: Interacts with CDKN3. Interacts with CDKN3-CDK2 complexes through its binding to CDKN3; this interactionfacilitates dissociation of cyclin A from CDKN3-CDK2 complexes
Subcellular location: Endomembrane system; Multi-pass membrane protein (By similarity). Cytoplasm, perinuclear region(By similarity). Note=Located in the perinuclear area
Secondary accessions: A8MTP8 Q8NHW2Alternative splicing: 3 isoforms: Q96HJ5-1 Q96HJ5-2 Q96HJ5-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for MS4A3: NX_Q96HJ5
MS4A3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (3 alternative transcripts):
NP_001026836.1 NP_001026979.1 NP_006129.4
ENSEMBL proteins: ENSP00000378473 ENSP00000278865 ENSP00000434109 ENSP00000434117 ENSP00000350872
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
MS4A3 for ontologies About GeneDecksing
MS4A3 Antibody Products:
Assay Products for MS4A3: |
Protein
Domains /
Families
for MS4A3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
MS4A3 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q96HJ5ProtoNet protein and cluster: Q96HJ5 UniProtKB/Swiss-Prot: MS4A3_HUMAN, Q96HJ5Domain: The C-terminal region is required for binding to CDKN3-CDK2 complexes and the modulation of CDKN3 activitySimilarity: Belongs to the MS4A family |
Function
for MS4A3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: MS4A3_HUMAN, Q96HJ5Function: Hematopoietic modulator for the G1-S cell cycle transition. Modulates the level of phosphorylation ofcyclin-dependent kinase 2 (CDK2) through its direct binding to cyclin-dependent kinase inhibitor 3 (CDKN3/KAP) Genatlas biochemistry entry for MS4A3:membrane-spanning 4-domains,subfamily A,member 3,hematopoietic cell-specific
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MS4A3 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MS4A3 (see all 4)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MS4A3 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table
MS4A3 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for MS4A3:
|
Pathways & Interactions
for MS4A3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MS4A3
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
2 Interacting proteins for MS4A3 (Q96HJ53 ENSP000002788654) via UniProtKB, MINT, STRING, and/or I2DAbout this table
|
Drugs & Compounds
for MS4A3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MS4A3
Search CenterWatch for drugs/clinical trials and news about MS4A3
|
Transcripts
for MS4A3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for MS4A3 gene (3 alternative transcripts): NM_001031666.1 NM_001031809.1 NM_006138.4 Unigene Cluster for MS4A3: Membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) Hs.99960 [show with all ESTs]Unigene Representative Sequence: NM_0061388 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000395032 ENST00000528298 ENST00000278865(uc001nom.3) ENST00000525686
ENST00000526199 ENST00000534744 ENST00000528952 ENST00000358152(uc001non.3 uc001noo.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MS4A3 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MS4A3 (see all 4)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 3): MS4A3 (NM_001031666) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MS4A3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MS4A3 |
Additional cDNA sequence: AY095480.1 BC008487.1 L35848.1 5 DOTS entries: DT.102798 DT.95164966 DT.120680427 DT.100737027 DT.91766584 24/70 AceView cDNA sequences (see all 70): BC008487 AW440753 AL531049 AY095480 CR612051 AW467382 BI019914 BG776284 BG184925 AL597703 BG484448 AL601630 NM_006138 BF903045 BG548258 BX453647 BG776839 L35848 BG195938 AW195127 BG495708 BF210675 BF184815 BG494288
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for MS4A3 (see all 7) About this scheme
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c |
|---|
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| SP1: | | | | | | | | | | | | | | | | | - | | | | - | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | - | | - | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | - | | - | | - | | - | | - | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | - | | - | | - | | - | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | - | | - | | - | | | | - | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for MS4A3
|
Expression
for MS4A3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| MS4A3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGCAAATTAT
About this image
See MS4A3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MS4A3
SOURCE GeneReport for Unigene cluster: Hs.99960
UniProtKB/Swiss-Prot: MS4A3_HUMAN, Q96HJ5Tissue specificity: Expressed specifically in hematopoietic cells and tissues
SABiosciences Custom PCR Arrays for MS4A3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MS4A3
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MS4A3 |
Orthologs
for MS4A3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for MS4A3 gene from 2/6 species (see all 6) About this table
ENSEMBL Gene Tree for MS4A3 (if available)
TreeFam Gene Tree for MS4A3 (if available) |
Paralogs
for MS4A3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MS4A3 gene
- MS4A22 MS4A182 MS4A8B2 MS4A4A2 MS4A122 MS4A152
1 SIMAP similar gene for MS4A3 using alignment to 2 protein entries: MS4A3_HUMAN (see all proteins):MS4A4A
MS4A3 for paralogs About GeneDecksing
|
Genomic Variants
for MS4A3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for MS4A3 (59824060 - 59838601 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for MS4A3
1 CNV: 34991
Human Gene Mutation Database (HGMD): MS4A3
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MS4A3 |
|
Disorders
/ Diseases
for MS4A3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
MS4A3 for disorders About GeneDecksing
OMIM gene information: 606498
OMIM disorders: --
3  diseases for MS4A3: About MalaCardshepatitis b asthma hepatitis
Genetic Association Database (GAD): MS4A3
Human Genome Epidemiology (HuGE) Navigator: MS4A3 (3 documents)
Export disorders for MS4A3 gene to outside databases
|
Publications
for MS4A3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for MS4A3 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with MS4A3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Cloning of the cDNA for a hematopoietic cell-specific protein related to CD20 and the beta subunit of the high-affinity IgE receptor: evidence for a family of proteins with four membrane-spanning regions. (PubMed id 7524084)1, 2, 3, 9 Adra C.N.... Lim B. (1994)
- Human HTm4 is a hematopoietic cell cycle regulator. (PubMed id 11781350)1, 2, 9 Donato J.-L.... Adra C.N. (2002)
- Binding of HTm4 to cyclin-dependent kinase (Cdk)-associated phosphatase (KAP).Cdk2.cyclin A complex enhances the phosphatase activity of KAP, dissociates cyclin A, and facilitates KAP dephosphorylation of Cdk2. (PubMed id 15671017)1, 2, 9 Chinami M.... Adra C.N. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Identification of a CD20-, FcepsilonRIbeta-, and HTm4-related gene family: sixteen new MS4A family members expressed in human and mouse. (PubMed id 11401424)1, 9 Liang Y. and Tedder T.F. (2001)
- Structural organization of the human MS4A gene cluster on chromosome 11q12. (PubMed id 11486273)1, 9 Liang Y.... Tedder T.F. (2001)
- Genome-wide association study identifies novel loci as sociated with serum level of vitamin B12 in Chinese men. (PubMed id 22367966)1 Lin X....Sun J. (2012)
- Characterization of the expression of HTm4 (MS4A3), a cell cycle regulator, in human peripheral blood cells and normal and malignant tissues. (PubMed id 19818099)1 Kutok J.L....Adra C.N. (2011)
- New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (2010)
- An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PubMed id 20677014)1 Shimada M....Tokunaga K. (2010)
|
External Searches for MS4A3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing MS4A3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing MS4A3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MS4A3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for MS4A3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for MS4A3 gene:
Search GeneIP for patents involving MS4A3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for MS4A3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MS4A3 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MS4A3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MS4A3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MS4A3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MS4A3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MS4A3 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MS4A3 |
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