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MS4A14 Gene

protein-coding   GIFtS: 43
GCID: GC11P060163

Membrane-Spanning 4-Domains, Subfamily A, Member 14

(Previous names: membrane-spanning 4-domains, subfamily A, member 16)
(Previous symbol: MS4A16)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Membrane-Spanning 4-Domains, Subfamily A, Member 141 2     Membrane-Spanning 4-Domains Subfamily A Member 142
MS4A161 2 3     MS4A13 Protein2
Membrane-Spanning 4-Domains, Subfamily A, Member 161 2     Testes Development-Related NYD-SP212
Testis Development Protein NYD-SP212 3     MS4A133
NYD-SP212     

External Ids:    HGNC: 307061   Entrez Gene: 846892   Ensembl: ENSG000001669287   UniProtKB: Q96JA43   

Export aliases for MS4A14 gene to outside databases

Previous GC identifers: GC11P059922 GC11P056510


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MS4A14 Gene:
MS4A14 (membrane-spanning 4-domains, subfamily A, member 14) is a protein-coding gene. An important paralog of this gene is MS4A5.

UniProtKB/Swiss-Prot: M4A14_HUMAN, Q96JA4
Function: May be involved in signal transduction as a component of a multimeric receptor complex (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MS4A14 gene promoter:
         CUTL1   GATA-1   Meis-1b   SRY   FOXO1a   STAT3   Meis-1a   ATF6   FOXO1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMS4A14 promoter sequence
   Search Chromatin IP Primers for MS4A14

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MS4A14


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q12.2   Ensembl cytogenetic band:  11q12.2   HGNC cytogenetic band: 11q12.2

MS4A14 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MS4A14 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P060163:  view genomic region     (about GC identifiers)

Start:
60,146,003 bp from pter      End:
60,185,229 bp from pter
Size:
39,227 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: M4A14_HUMAN, Q96JA4 (See protein sequence)
Recommended Name: Membrane-spanning 4-domains subfamily A member 14  
Size: 679 amino acids; 76580 Da
Secondary accessions: Q2TVT5 Q3B7W3 Q86XH8 Q9NTC2
Alternative splicing: 3 isoforms:  Q96JA4-1   Q96JA4-2   Q96JA4-4   

Explore the universe of human proteins at neXtProt for MS4A14: NX_Q96JA4

Explore proteomics data for MS4A14 at MOPED


See MS4A14 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (4 alternative transcripts): 
NP_001073160.1  NP_001248756.1  NP_001248757.1  NP_115986.3  

ENSEMBL proteins: 
 ENSP00000437222   ENSP00000300187   ENSP00000378453   ENSP00000435764   ENSP00000437003  
 ENSP00000434649   ENSP00000434271   ENSP00000433761   ENSP00000432323   ENSP00000433014  
 ENSP00000378449  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR007237 CD20-like

Graphical View of Domain Structure for InterPro Entry Q96JA4

ProtoNet protein and cluster: Q96JA4

1 Blocks protein domain: IPB007237 CD20/IgE Fc receptor beta subunit

UniProtKB/Swiss-Prot: M4A14_HUMAN, Q96JA4
Similarity: Belongs to the MS4A family


Find genes that share domains with MS4A14           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: M4A14_HUMAN, Q96JA4
Function: May be involved in signal transduction as a component of a multimeric receptor complex (By similarity)

Phenotypes:
     1 MGI phenotypic allele for Ms4a14 (no phenotypes)


Find genes that share phenotypes with MS4A14           About GenesLikeMe

Animal Models:
     MGI mouse knock-out Ms4a14tm1Lex for MS4A14

   genOway: Develop your customized and physiologically relevant rodent model for MS4A14

miRNA
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miRTarBase miRNAs that target MS4A14:
hsa-mir-335-5p (MIRT018213)

Block miRNA regulation of human, mouse, rat MS4A14 using miScript Target Protectors
5 qRT-PCR Assays for microRNAs that regulate MS4A14:
hsa-miR-3158-3p hsa-miR-515-5p hsa-miR-3143 hsa-miR-766 hsa-miR-519e*
SwitchGear 3'UTR luciferase reporter plasmidMS4A14 3' UTR sequence
Inhib. RNA
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OriGene RNAi products in human, mouse, rat for MS4A14
Predesigned siRNA for gene silencing in human, mouse, rat MS4A14

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GenScript: all cDNA clones in your preferred vector (see all 2): MS4A14 (NM_032597)
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
M4A14_HUMAN, Q96JA4: Membrane; Multi-pass membrane protein (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
endoplasmic reticulum1
mitochondrion1
nucleus1
peroxisome1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016021integral component of membrane IEA--

Find genes that share ontologies with MS4A14           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MS4A14
Interactions:

    Search GeneGlobe Interaction Network for MS4A14

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MS4A14 (M4A14)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MS4A14 gene (4 alternative transcripts): 
NM_001079692.2  NM_001261827.1  NM_001261828.1  NM_032597.4  

11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000531787(uc001npi.3) ENST00000300187(uc001npn.3 uc001npj.3 uc001npk.3 uc001npl.3)
ENST00000395005 ENST00000526375 ENST00000530662(uc001npm.3) ENST00000527841
ENST00000525397 ENST00000531783 ENST00000531949 ENST00000534688 ENST00000395001

miRNA
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Block miRNA regulation of human, mouse, rat MS4A14 using miScript Target Protectors
5 qRT-PCR Assays for microRNAs that regulate MS4A14:
hsa-miR-3158-3p hsa-miR-515-5p hsa-miR-3143 hsa-miR-766 hsa-miR-519e*
SwitchGear 3'UTR luciferase reporter plasmidMS4A14 3' UTR sequence
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for MS4A14
Predesigned siRNA for gene silencing in human, mouse, rat MS4A14
Clone
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GenScript: all cDNA clones in your preferred vector (see all 2): MS4A14 (NM_032597)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for MS4A14
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MS4A14
Primer
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OriGene qSTAR qPCR primer pairs in human, mouse for MS4A14
Pre-validated RT2 qPCR Primer Assay in human, mouse, rat MS4A14
  QuantiTect SYBR Green Assays in human, mouse, rat MS4A14
  QuantiFast Probe-based Assays in human, mouse, rat MS4A14

Selected AceView cDNA sequences (see all 241):

AI672667 N40188 CK821882 NM_206940 AK075106 BC043485 AA287646 AA769122 
AA648784 R64371 AA845191 AW191839 AI208877 NM_021201 BX480789 CA415166 
BQ027295 AA704981 BU626565 AI218098 BQ029877 CA949978 AL137391 CA449361 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for MS4A14 (see all 6)    About this scheme

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d · 7e
SP1:                                -     -                                                   
SP2:                                -                       -                                 
SP3:                                -                 -     -                                 
SP4:                                -     -                 -                                 
SP5:                                -     -           -     -                                 


ECgene alternative splicing isoforms for MS4A14

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MS4A14 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CTGAGCACTC
MS4A14 Expression
About this image


MS4A14 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Blood (Hematopoietic System)
         Monocytes Peripheral Blood
 
 Testis (Reproductive System)
MS4A14 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MS4A14 Protein Expression
    Custom PCR Arrays for MS4A14
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MS4A14

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for MS4A14 gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ms4a145 membrane-spanning 4-domains, subfamily A, member 14   --   19 (8.37 cM) 11301494 


ENSEMBL Gene Tree for MS4A14 (if available)
TreeFam Gene Tree for MS4A14 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for MS4A14 gene
MS4A52  
2 SIMAP similar genes for MS4A14 using alignment to 8 protein entries:     M4A14_HUMAN (see all proteins):
MS4A5    MS4A8

Find genes that share paralogs with MS4A14           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MS4A14 (see all 588)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs65915791,2
C,F,H--60163958(+) TCTCTA/GAGGGC 8 -- ut51 nc-transcript-variant18Minor allele frequency- G:0.01NS EA NA WA CSA 797
rs2005923801,2
--60164046(+) GCCATA/GGAATC 8 -- ut51 nc-transcript-variant0--------
rs2014624211,2
C--60164055(+) TCATGA/C/GAGTCA 20 K Q E mis11EU 1321
rs2000921611,2
C--60164087(+) ACTCAC/TGTCAT 12 H syn11Minor allele frequency- T:0.00EU 1321
rs1503235581,2
C,F--60164126(+) ACTGCA/TTTTCC 12 A syn11Minor allele frequency- T:0.00NA 4550
rs2000174431,2
--60164139(+) ACAGAA/CCTCAT 12 T P mis10--------
rs1388958741,2
C,F--60164187(+) TCTTGG/AGGGTA 12 /R /G mis12Minor allele frequency- A:0.00NA EU 5703
rs22419201,2
C,F,O,A,H--60164204(+) CTCCAA/GTCAAT 8 -- int1113Minor allele frequency- G:0.38EA NS NA PA EU CA WA CSA 9034
rs1872045361,2
--60164213(+) ATAGGA/TCTTCC 8 -- int10--------
rs22419211,2
C,F,A,H--60164302(+) TTCTAT/CTTTTC 8 -- int1 trp325Minor allele frequency- C:0.36EA NS NA WA CSA 3458

HapMap Linkage Disequilibrium report for MS4A14 (60146003 - 60185229 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for MS4A14:    About this table    
Variant IDTypeSubtypePubMed ID
esv2215205CNV Deletion18987734
esv2744569CNV Deletion23290073

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MS4A14
DNA2.0 Custom Variant and Variant Library Synthesis for MS4A14

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with MS4A14           About GenesLikeMe

Genetic Association Database (GAD): MS4A14
Human Genome Epidemiology (HuGE) Navigator: MS4A14 (1 document)

Export disorders for MS4A14 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MS4A14 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MS4A14)
    Utopia: connect your pdf to the dynamic
world of online information

  1. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (Genes Immun. 2010)
  2. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (BMC Genomics 2007)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  8. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 84689 HGNC: 30706 AceView: MS4A7andNYD-SP21 Ensembl:ENSG00000166928 euGenes: HUgn84689
ECgene: MS4A14 H-InvDB: MS4A14

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MS4A14 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MS4A14 gene:
Search GeneIP for patents involving MS4A14

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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