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Aliases for MS4A13 Gene

Aliases for MS4A13 Gene

  • Membrane-Spanning 4-Domains, Subfamily A, Member 13 2 3
  • Testis-Expressed Transmembrane Protein 4 4

External Ids for MS4A13 Gene

Summaries for MS4A13 Gene

GeneCards Summary for MS4A13 Gene

MS4A13 (Membrane-Spanning 4-Domains, Subfamily A, Member 13) is a Protein Coding gene.

UniProtKB/Swiss-Prot for MS4A13 Gene

  • May be involved in signal transduction as a component of a multimeric receptor complex.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MS4A13 Gene

Genomics for MS4A13 Gene

Genomic Location for MS4A13 Gene

Start:
60,515,413 bp from pter
End:
60,542,721 bp from pter
Size:
27,309 bases
Orientation:
Plus strand

Genomic View for MS4A13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MS4A13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MS4A13 Gene

Regulatory Elements for MS4A13 Gene

Proteins for MS4A13 Gene

  • Protein details for MS4A13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5J8X5-M4A13_HUMAN
    Recommended name:
    Membrane-spanning 4-domains subfamily A member 13
    Protein Accession:
    Q5J8X5
    Secondary Accessions:
    • B2RTS9
    • Q5J8X3
    • Q5J8X4

    Protein attributes for MS4A13 Gene

    Size:
    152 amino acids
    Molecular mass:
    17307 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MS4A13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MS4A13 Gene

Proteomics data for MS4A13 Gene at MOPED

Post-translational modifications for MS4A13 Gene

No Post-translational modifications

Other Protein References for MS4A13 Gene

No data available for DME Specific Peptides for MS4A13 Gene

Domains for MS4A13 Gene

Protein Domains for MS4A13 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

M4A13_HUMAN
Family:
  • Belongs to the MS4A family.:
    • Q5J8X5
genes like me logo Genes that share domains with MS4A13: view

No data available for Gene Families for MS4A13 Gene

Function for MS4A13 Gene

Molecular function for MS4A13 Gene

UniProtKB/Swiss-Prot Function: May be involved in signal transduction as a component of a multimeric receptor complex.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MS4A13 Gene

Localization for MS4A13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MS4A13 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MS4A13 Gene COMPARTMENTS Subcellular localization image for MS4A13 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for MS4A13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MS4A13: view

Pathways for MS4A13 Gene

SuperPathways for MS4A13 Gene

No Data Available

Interacting Proteins for MS4A13 Gene

Gene Ontology (GO) - Biological Process for MS4A13 Gene

None

No data available for Pathways by source for MS4A13 Gene

Transcripts for MS4A13 Gene

mRNA/cDNA for MS4A13 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MS4A13 Gene

Membrane-spanning 4-domains, subfamily A, member 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MS4A13 Gene

No ASD Table

Relevant External Links for MS4A13 Gene

GeneLoc Exon Structure for
MS4A13
ECgene alternative splicing isoforms for
MS4A13

Expression for MS4A13 Gene

mRNA expression in normal human tissues for MS4A13 Gene

mRNA differential expression in normal tissues according to GTEx for MS4A13 Gene

This gene is overexpressed in Testis (53.0).

SOURCE GeneReport for Unigene cluster for MS4A13 Gene Hs.523704

genes like me logo Genes that share expressions with MS4A13: view

Orthologs for MS4A13 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MS4A13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MS4A13 36
  • 98.68 (n)
  • 96.71 (a)
MS4A13 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MS4A13 36
  • 77.92 (n)
  • 62.25 (a)
MS4A13 37
  • 60 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100685813 36
  • 80.79 (n)
  • 72.19 (a)
MS4A13 37
  • 61 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ms4a13 36
  • 74.88 (n)
  • 67.16 (a)
Ms4a13 16
Ms4a13 37
  • 44 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MS4A13 37
  • 12 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ms4a13-ps1 36
  • 73.33 (n)
  • 62.67 (a)
Species with no ortholog for MS4A13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MS4A13 Gene

ENSEMBL:
Gene Tree for MS4A13 (if available)
TreeFam:
Gene Tree for MS4A13 (if available)

Paralogs for MS4A13 Gene

No data available for Paralogs for MS4A13 Gene

Variants for MS4A13 Gene

Sequence variations from dbSNP and Humsavar for MS4A13 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs750939 -- 60,540,566(-) TCACT(A/G)AATAA intron-variant
rs766110 -- 60,513,477(-) GCAAT(A/G)TCCAT upstream-variant-2KB
rs1988800 -- 60,538,657(+) GCCTG(A/G)TGTCC intron-variant
rs2077468 -- 60,540,729(-) GCTCA(A/T)ATGGT intron-variant
rs2186919 -- 60,530,495(-) tgtcc(G/T)caatc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MS4A13 Gene

Variant ID Type Subtype PubMed ID
nsv337 CNV Insertion 18451855
esv267487 CNV Insertion 20981092
esv273867 CNV Insertion 20981092

Relevant External Links for MS4A13 Gene

HapMap Linkage Disequilibrium report
MS4A13

Disorders for MS4A13 Gene

No disorders were found for MS4A13 Gene.

No data available for UniProtKB/Swiss-Prot for MS4A13 Gene

Publications for MS4A13 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B. … Boerwinkle E. (Genet. Epidemiol. 2013) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for MS4A13 Gene

Sources for MS4A13 Gene

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