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Aliases for MRPS9 Gene

Aliases for MRPS9 Gene

  • Mitochondrial Ribosomal Protein S9 2 3 5
  • 28S Ribosomal Protein S9, Mitochondrial 2 3
  • MRP-S9 3 4
  • RPMS9 3 4
  • S9mt 3 4

External Ids for MRPS9 Gene

Previous GeneCards Identifiers for MRPS9 Gene

  • GC02P103518
  • GC02P104107
  • GC02P105259
  • GC02P105275
  • GC02P105113
  • GC02P105654
  • GC02P099424

Summaries for MRPS9 Gene

Entrez Gene Summary for MRPS9 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPS9 Gene

MRPS9 (Mitochondrial Ribosomal Protein S9) is a Protein Coding gene. Among its related pathways are Mitochondrial translation and Viral mRNA Translation. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPS9 Gene

Genomics for MRPS9 Gene

Regulatory Elements for MRPS9 Gene

Enhancers for MRPS9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F105080 2.4 VISTA Ensembl ENCODE 38 +43.2 43228 1.0 GATAD2A ELF3 SOX5 SOX13 ZNF644 NR2F2 RARA SCRT2 CTBP2 SMAD4 MRPS9 GC02P105097 LOC102724691
GH02F105102 1 Ensembl ENCODE 35.6 +65.6 65627 2.0 TEAD4 MAX SIN3A POLR2A PRDM10 FOS KLF8 EGR2 SP3 ZFP37 MRPS9 LOC105373527 LINC01918
GH02F105052 0.9 ENCODE 38.1 +15.2 15215 0.8 HDAC1 FEZF1 RARA CHAMP1 ZNF766 GATA2 SP5 ZEB2 MEF2D SMARCA4 MRPS9 LOC102724691 GC02P105097
GH02F105037 1.1 ENCODE 14.4 +0.2 177 2.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF548 MRPS9 TGFBRAP1 LOC102724691
GH02F104844 1.5 FANTOM5 Ensembl ENCODE 10.5 -192.9 -192872 1.6 KLF17 RAD21 YY1 GLIS2 EGR2 SP3 ZEB2 ZNF843 NR2F2 ZNF341 POU3F3 MRPS9 GPR45 LINC01158 GC02M104827
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPS9 on UCSC Golden Path with GeneCards custom track

Promoters for MRPS9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for MRPS9 Gene

105,037,983 bp from pter
105,099,960 bp from pter
61,978 bases
Plus strand

Genomic View for MRPS9 Gene

Genes around MRPS9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS9 Gene

Proteins for MRPS9 Gene

  • Protein details for MRPS9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    28S ribosomal protein S9, mitochondrial
    Protein Accession:
    Secondary Accessions:
    • Q6PG40

    Protein attributes for MRPS9 Gene

    396 amino acids
    Molecular mass:
    45835 Da
    Quaternary structure:
    • Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

    Three dimensional structures from OCA and Proteopedia for MRPS9 Gene

neXtProt entry for MRPS9 Gene

Post-translational modifications for MRPS9 Gene

  • Ubiquitination at Lys 119
  • Modification sites at PhosphoSitePlus

Other Protein References for MRPS9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MRPS9 Gene

Domains & Families for MRPS9 Gene

Gene Families for MRPS9 Gene

Suggested Antigen Peptide Sequences for MRPS9 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the ribosomal protein S9P family.
  • Belongs to the ribosomal protein S9P family.
genes like me logo Genes that share domains with MRPS9: view

Function for MRPS9 Gene

Gene Ontology (GO) - Molecular Function for MRPS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IBA --
GO:0005515 protein binding IPI 22190034
GO:0044822 poly(A) RNA binding IDA 22681889
genes like me logo Genes that share ontologies with MRPS9: view
genes like me logo Genes that share phenotypes with MRPS9: view

Animal Model Products

miRNA for MRPS9 Gene

miRTarBase miRNAs that target MRPS9

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPS9 Gene

Localization for MRPS9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPS9 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRPS9 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytosol 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for MRPS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
GO:0005739 mitochondrion IDA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005763 mitochondrial small ribosomal subunit NAS 11279123
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with MRPS9: view

Pathways & Interactions for MRPS9 Gene

genes like me logo Genes that share pathways with MRPS9: view

Gene Ontology (GO) - Biological Process for MRPS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA --
GO:0006412 translation IBA --
GO:0042769 DNA damage response, detection of DNA damage NAS 15300802
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPS9: view

No data available for SIGNOR curated interactions for MRPS9 Gene

Transcripts for MRPS9 Gene

Unigene Clusters for MRPS9 Gene

Mitochondrial ribosomal protein S9:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS9 Gene

No ASD Table

Relevant External Links for MRPS9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MRPS9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MRPS9 Gene

Protein differential expression in normal tissues from HIPED for MRPS9 Gene

This gene is overexpressed in Lung (33.0) and Peripheral blood mononuclear cells (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPS9 Gene

Protein tissue co-expression partners for MRPS9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPS9 Gene:


SOURCE GeneReport for Unigene cluster for MRPS9 Gene:

genes like me logo Genes that share expression patterns with MRPS9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MRPS9 Gene

Orthologs for MRPS9 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MRPS9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia MRPS9 34 35
  • 99.33 (n)
(Canis familiaris)
Mammalia MRPS9 34 35
  • 86.67 (n)
(Rattus norvegicus)
Mammalia Mrps9 34
  • 81.2 (n)
(Mus musculus)
Mammalia Mrps9 34 16 35
  • 80.34 (n)
(Bos Taurus)
Mammalia MRPS9 34 35
  • 79.38 (n)
(Ornithorhynchus anatinus)
Mammalia MRPS9 35
  • 77 (a)
(Monodelphis domestica)
Mammalia MRPS9 35
  • 75 (a)
(Gallus gallus)
Aves MRPS9 34 35
  • 71.09 (n)
(Anolis carolinensis)
Reptilia MRPS9 35
  • 62 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia mrps9 34
  • 68.4 (n)
(Danio rerio)
Actinopterygii mrps9 34 35
  • 59.49 (n)
fruit fly
(Drosophila melanogaster)
Insecta mRpS9 36 34 35
  • 52.27 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010268 34
  • 51.3 (n)
(Caenorhabditis elegans)
Secernentea mrps-9 34 35
  • 44.9 (n)
F09G8.3 36
  • 33 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MRPS9 35 37
  • 28 (a)
Species where no ortholog for MRPS9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPS9 Gene

Gene Tree for MRPS9 (if available)
Gene Tree for MRPS9 (if available)

Paralogs for MRPS9 Gene

No data available for Paralogs for MRPS9 Gene

Variants for MRPS9 Gene

Sequence variations from dbSNP and Humsavar for MRPS9 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10165497 -- 105,083,423(+) GGGAA(C/T)GGTGG intron-variant
rs10172135 -- 105,046,454(+) TCAAC(A/C)TCATG intron-variant
rs10188134 -- 105,083,080(+) TAATA(A/G)CCATT intron-variant
rs10202663 -- 105,080,394(+) GCTGT(C/T)GGGGG intron-variant
rs10205442 -- 105,080,858(+) TGCTC(C/T)ACAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MRPS9 Gene

Variant ID Type Subtype PubMed ID
nsv820123 CNV gain 19587683
nsv582576 CNV loss 21841781
nsv472394 CNV novel sequence insertion 20440878
nsv1013096 CNV loss 25217958
esv3591824 CNV loss 21293372
esv3559884 CNV deletion 23714750
esv3346284 CNV insertion 20981092
esv2842792 CNV deletion 24192839
esv27425 CNV loss 19812545
esv2720479 CNV deletion 23290073
esv2720478 CNV deletion 23290073
esv2720477 CNV deletion 23290073
esv2720476 CNV deletion 23290073
esv2720475 CNV deletion 23290073
esv2720474 CNV deletion 23290073
esv2663750 CNV deletion 23128226
dgv86e180 CNV deletion 20482838
dgv85e180 CNV loss 20482838
dgv6984n54 CNV loss 21841781
dgv6983n54 CNV loss 21841781

Variation tolerance for MRPS9 Gene

Residual Variation Intolerance Score: 57.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.27; 40.70% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPS9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPS9 Gene

Disorders for MRPS9 Gene

Relevant External Links for MRPS9

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MRPS9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPS9 Gene

Publications for MRPS9 Gene

  1. The small subunit of the mammalian mitochondrial ribosome: identification of the full complement of ribosomal proteins present. (PMID: 11279123) Koc E.C. … Spremulli L.L. (J. Biol. Chem. 2001) 2 3 4 64
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. BioID-based Identification of Skp Cullin F-box (SCF)I^-TrCP1/2 E3 Ligase Substrates. (PMID: 25900982) Coyaud E. … Raught B. (Mol. Cell Proteomics 2015) 3 64
  5. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3 64

Products for MRPS9 Gene

Sources for MRPS9 Gene

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