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Aliases for MRPS7 Gene

Aliases for MRPS7 Gene

  • Mitochondrial Ribosomal Protein S7 2 3 5
  • Mitochondrial Small Ribosomal Subunit Protein US7m 3 4
  • BMRP-27a 3 4
  • BMRP27a 3 4
  • MRP-S7 3 4
  • S7mt 3 4
  • 28S Ribosomal Protein S7, Mitochondrial 3
  • 30S Ribosomal Protein S7 Homolog 3
  • MRP-S 3
  • RP-S7 3
  • RPMS7 3

External Ids for MRPS7 Gene

Previous GeneCards Identifiers for MRPS7 Gene

  • GC17P073254
  • GC17P076316
  • GC17P073721
  • GC17P073854
  • GC17P070769
  • GC17P068667

Summaries for MRPS7 Gene

Entrez Gene Summary for MRPS7 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. In the prokaryotic ribosome, the comparable protein is thought to play an essential role in organizing the 3' domain of the 16 S rRNA in the vicinity of the P- and A-sites. Pseudogenes corresponding to this gene are found on chromosomes 8p and 12p. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPS7 Gene

MRPS7 (Mitochondrial Ribosomal Protein S7) is a Protein Coding gene. Diseases associated with MRPS7 include Syndromic Sensorineural Deafness Due To Combined Oxidative Phosphorylation Defect. Among its related pathways are Mitochondrial translation and Organelle biogenesis and maintenance. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for MRPS7 Gene

Additional gene information for MRPS7 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPS7 Gene

Genomics for MRPS7 Gene

Regulatory Elements for MRPS7 Gene

Enhancers for MRPS7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H075260 1.4 ENCODE dbSUPER 24 +0.1 132 3 HDGF PKNOX1 ARNT ZFP64 SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 NUP85 MRPS7 UNK GGA3 H3F3B MIF4GD SAP30BP NT5C CDR2L CD300A
GH17H075307 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +47.7 47733 3.2 HDGF PKNOX1 SIN3A DMAP1 ZBTB7B YY1 SLC30A9 ZNF207 FOS SP5 NUP85 NT5C UNK ENSG00000266980 MRPS7 GGA3 TRIM65 NAT9 GRB2 LOC100287042
GH17H075334 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +80.2 80151 14.4 HDGF PKNOX1 ATF1 ARNT SIN3A FEZF1 TCF12 ZNF121 ZNF766 GATA2 GRB2 LLGL2 MRPS7 NUP85 TMEM94 TSEN54 CASKIN2 MIF4GD MYO15B SMIM5
GH17H075311 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +54.5 54518 10 HDGF PKNOX1 SIN3A ZNF143 FOS ATF7 RUNX3 PAF1 JUNB NFIL3 GRB2 MRPS7 NUP85 MIF4GD SLC25A19 H3F3B LLGL2 SAP30BP USH1G SLC16A5
GH17H075076 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -183.0 -182980 3.5 FOXA2 MLX ARID4B DMAP1 YY1 ZNF143 FOS RUNX3 SP5 ZHX2 MRPS7 TRIM80P HID1 CDR2L SUMO2 LLGL2 ARMC7 RAB37 SLC16A5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPS7 on UCSC Golden Path with GeneCards custom track

Promoters for MRPS7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098346 -68 2001 HDGF PKNOX1 MLX ARNT ZFP64 SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Locations for MRPS7 Gene

Genomic Locations for MRPS7 Gene
chr17:75,261,668-75,266,376
(GRCh38/hg38)
Size:
4,709 bases
Orientation:
Plus strand
chr17:73,257,749-73,262,457
(GRCh37/hg19)

Genomic View for MRPS7 Gene

Genes around MRPS7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS7 Gene

Proteins for MRPS7 Gene

  • Protein details for MRPS7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2R9-RT07_HUMAN
    Recommended name:
    28S ribosomal protein S7, mitochondrial
    Protein Accession:
    Q9Y2R9
    Secondary Accessions:
    • B2R9N5
    • Q53GD6

    Protein attributes for MRPS7 Gene

    Size:
    242 amino acids
    Molecular mass:
    28134 Da
    Quaternary structure:
    • Component of the mitochondrial small ribosomal subunit (mt-SSU). Mature mammalian 55S mitochondrial ribosomes consist of a small (28S) and a large (39S) subunit. The 28S small subunit contains a 12S ribosomal RNA (12S mt-rRNA) and 30 different proteins. The 39S large subunit contains a 16S rRNA (16S mt-rRNA), a copy of mitochondrial valine transfer RNA (mt-tRNA(Val)), which plays an integral structural role, and 52 different proteins.

    Three dimensional structures from OCA and Proteopedia for MRPS7 Gene

neXtProt entry for MRPS7 Gene

Post-translational modifications for MRPS7 Gene

  • Ubiquitination at Lys48, posLast=163163, and posLast=221221
  • Modification sites at PhosphoSitePlus

Other Protein References for MRPS7 Gene

No data available for DME Specific Peptides for MRPS7 Gene

Domains & Families for MRPS7 Gene

Gene Families for MRPS7 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Ribosomal proteins

Protein Domains for MRPS7 Gene

Suggested Antigen Peptide Sequences for MRPS7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y2R9

UniProtKB/Swiss-Prot:

RT07_HUMAN :
  • Belongs to the universal ribosomal protein uS7 family.
Family:
  • Belongs to the universal ribosomal protein uS7 family.
genes like me logo Genes that share domains with MRPS7: view

Function for MRPS7 Gene

Phenotypes From GWAS Catalog for MRPS7 Gene

Gene Ontology (GO) - Molecular Function for MRPS7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
GO:0003729 mRNA binding IBA --
GO:0003735 structural constituent of ribosome IBA,ISS --
GO:0019843 rRNA binding IBA --
genes like me logo Genes that share ontologies with MRPS7: view
genes like me logo Genes that share phenotypes with MRPS7: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS7 Gene

Localization for MRPS7 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPS7 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRPS7 gene
Compartment Confidence
mitochondrion 5
plasma membrane 2
nucleus 2
extracellular 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for MRPS7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005763 mitochondrial small ribosomal subunit ISS --
GO:0005840 ribosome IEA --
GO:0030529 intracellular ribonucleoprotein complex IEA --
genes like me logo Genes that share ontologies with MRPS7: view

Pathways & Interactions for MRPS7 Gene

genes like me logo Genes that share pathways with MRPS7: view

Gene Ontology (GO) - Biological Process for MRPS7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA --
GO:0006412 translation IBA,IEA --
GO:0032543 mitochondrial translation ISS --
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPS7: view

No data available for SIGNOR curated interactions for MRPS7 Gene

Drugs & Compounds for MRPS7 Gene

No Compound Related Data Available

Transcripts for MRPS7 Gene

Unigene Clusters for MRPS7 Gene

Mitochondrial ribosomal protein S7:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS7 Gene

No ASD Table

Relevant External Links for MRPS7 Gene

GeneLoc Exon Structure for
MRPS7
ECgene alternative splicing isoforms for
MRPS7

Expression for MRPS7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MRPS7 Gene

Protein differential expression in normal tissues from HIPED for MRPS7 Gene

This gene is overexpressed in Liver (9.9), Pancreas (9.2), and Lung (8.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPS7 Gene



Protein tissue co-expression partners for MRPS7 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPS7 Gene:

MRPS7

SOURCE GeneReport for Unigene cluster for MRPS7 Gene:

Hs.71787

Evidence on tissue expression from TISSUES for MRPS7 Gene

  • Intestine(4.5)
  • Blood(4.4)
  • Muscle(4.4)
  • Eye(4.3)
  • Nervous system(3.9)
  • Liver(2.8)
  • Kidney(2.6)
  • Lung(2.5)
  • Skin(2.4)
  • Heart(2.3)
genes like me logo Genes that share expression patterns with MRPS7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS7 Gene

Orthologs for MRPS7 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MRPS7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPS7 33 34
  • 99.17 (n)
cow
(Bos Taurus)
Mammalia MRPS7 33 34
  • 87.6 (n)
dog
(Canis familiaris)
Mammalia MRPS7 33 34
  • 86.64 (n)
mouse
(Mus musculus)
Mammalia Mrps7 33 16 34
  • 82.78 (n)
rat
(Rattus norvegicus)
Mammalia Mrps7 33
  • 82.51 (n)
oppossum
(Monodelphis domestica)
Mammalia MRPS7 34
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MRPS7 34
  • 68 (a)
OneToOne
chicken
(Gallus gallus)
Aves MRPS7 33 34
  • 68.24 (n)
lizard
(Anolis carolinensis)
Reptilia MRPS7 34
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mrps7 33
  • 62.83 (n)
Str.10836 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.7175 33
zebrafish
(Danio rerio)
Actinopterygii mrps7 33 34
  • 64.48 (n)
wufb66e05 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3540 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009613 33
  • 55.44 (n)
fruit fly
(Drosophila melanogaster)
Insecta mRpS7 35 33 34
  • 54.42 (n)
worm
(Caenorhabditis elegans)
Secernentea mrps-7 33 34
  • 47.92 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons rps7 33
  • 42.89 (n)
rice
(Oryza sativa)
Liliopsida rps7 33
  • 41.96 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6785 34
  • 34 (a)
OneToOne
Species where no ortholog for MRPS7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPS7 Gene

ENSEMBL:
Gene Tree for MRPS7 (if available)
TreeFam:
Gene Tree for MRPS7 (if available)

Paralogs for MRPS7 Gene

Pseudogenes.org Pseudogenes for MRPS7 Gene

genes like me logo Genes that share paralogs with MRPS7: view

No data available for Paralogs for MRPS7 Gene

Variants for MRPS7 Gene

Sequence variations from dbSNP and Humsavar for MRPS7 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000003367 -- 75,260,882(+) TCAAC(A/G)CTGAC intron-variant, upstream-variant-2KB
rs1000611101 -- 75,264,928(+) TACCT(A/G)TGGTC intron-variant
rs1001235983 -- 75,261,650(+) CGGGG(C/G)GGGGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001383684 -- 75,265,209(+) AATTT(G/T)TGCAT intron-variant
rs1001844260 -- 75,260,206(+) TCAGC(A/T)TAGGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MRPS7 Gene

Variant ID Type Subtype PubMed ID
nsv576027 CNV gain 21841781
nsv510727 CNV deletion 20534489
nsv1066312 CNV gain 25217958

Variation tolerance for MRPS7 Gene

Residual Variation Intolerance Score: 47.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.44; 54.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPS7 Gene

Human Gene Mutation Database (HGMD)
MRPS7
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPS7 Gene

Disorders for MRPS7 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MRPS7 Gene - From: Orphanet

Disorder Aliases PubMed IDs
syndromic sensorineural deafness due to combined oxidative phosphorylation defect
  • syndromic sensorineural deafness due to coxpd
- elite association - COSMIC cancer census association via MalaCards
Search MRPS7 in MalaCards View complete list of genes associated with diseases

Relevant External Links for MRPS7

Genetic Association Database (GAD)
MRPS7
Human Genome Epidemiology (HuGE) Navigator
MRPS7
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPS7
genes like me logo Genes that share disorders with MRPS7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MRPS7 Gene

Publications for MRPS7 Gene

  1. Ribosome. The structure of the human mitochondrial ribosome. (PMID: 25838379) Amunts A … Ramakrishnan V (Science (New York, N.Y.) 2015) 3 4 60
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 45 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. (PMID: 12706105) Zhang Z … Gerstein M (Genomics 2003) 3 22 60
  5. The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. (PMID: 11279123) Cavdar Koc E … Spremulli LL (The Journal of biological chemistry 2001) 3 4 60

Products for MRPS7 Gene

Sources for MRPS7 Gene

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