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Aliases for MRPS30-DT Gene

Subcategory (RNA class) for MRPS30-DT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MRPS30-DT Gene

  • MRPS30 Divergent Transcript 2 3
  • Breast Cancer-Associated Transcript 54 2 3
  • AC093297.2 5
  • BRCAT54 3

External Ids for MRPS30-DT Gene

Summaries for MRPS30-DT Gene

GeneCards Summary for MRPS30-DT Gene

MRPS30-DT (MRPS30 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MRPS30-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPS30-DT Gene

Genomics for MRPS30-DT Gene

Regulatory Elements for MRPS30-DT Gene

Enhancers for MRPS30-DT Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H044874 1.4 FANTOM5 Ensembl ENCODE 12.1 -67.1 -67134 2 TBP BMI1 BATF RFX5 SCRT2 SMARCC2 RCOR1 ATF7 FOS ETV6 ENSG00000272335 MRPS30-DT GC05M044556
GH05H044808 1.1 ENCODE 14.5 -0.9 -933 3 PKNOX1 SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143 FOS ENSG00000272335 ENSG00000250418 ENSG00000248148 MRPS30-DT MRPS30 PIR47362
GH05H044690 0.7 ENCODE 10.9 +117.2 117199 2 SMARCE1 CEBPB CEBPG DPF2 EP300 ZNF217 CTBP1 JUND GATA3 FOS MRPS30-DT LINC02224 ENSG00000250418
GH05H044788 0.5 ENCODE 4.5 +19.2 19158 1 JUND JUN MAX ENSG00000272335 MRPS30-DT PIR31464 ENSG00000248779
GH05H044807 0.6 Ensembl 0.7 +1.3 1293 0 TBP ZNF211 POLR2A STAT3 CEBPB ZNF433 MRPS30-DT PIR31366
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPS30-DT on UCSC Golden Path with GeneCards custom track

Promoters for MRPS30-DT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180282 -807 2801 PKNOX1 FOXA2 SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143

Genomic Location for MRPS30-DT Gene

Chromosome:
5
Start:
44,744,328 bp from pter
End:
44,808,793 bp from pter
Size:
64,466 bases
Orientation:
Minus strand

Genomic View for MRPS30-DT Gene

Genes around MRPS30-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS30-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS30-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS30-DT Gene

Proteins for MRPS30-DT Gene

Post-translational modifications for MRPS30-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPS30-DT Gene

Domains & Families for MRPS30-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MRPS30-DT Gene

Function for MRPS30-DT Gene

Phenotypes From GWAS Catalog for MRPS30-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPS30-DT Gene

Localization for MRPS30-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MRPS30-DT Gene

Pathways & Interactions for MRPS30-DT Gene

SuperPathways for MRPS30-DT Gene

No Data Available

Interacting Proteins for MRPS30-DT Gene

Gene Ontology (GO) - Biological Process for MRPS30-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MRPS30-DT Gene

Drugs & Compounds for MRPS30-DT Gene

No Compound Related Data Available

Transcripts for MRPS30-DT Gene

mRNA/cDNA for MRPS30-DT Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS30-DT Gene

No ASD Table

Relevant External Links for MRPS30-DT Gene

GeneLoc Exon Structure for
MRPS30-DT
ECgene alternative splicing isoforms for
MRPS30-DT

Expression for MRPS30-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPS30-DT Gene

Orthologs for MRPS30-DT Gene

Evolution for MRPS30-DT Gene

ENSEMBL:
Gene Tree for MRPS30-DT (if available)
TreeFam:
Gene Tree for MRPS30-DT (if available)

No data available for Orthologs for MRPS30-DT Gene

Paralogs for MRPS30-DT Gene

No data available for Paralogs for MRPS30-DT Gene

Variants for MRPS30-DT Gene

Sequence variations from dbSNP and Humsavar for MRPS30-DT Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000005392 -- 44,788,065(+) GACAG(-/AAGGTA)AAGGT intron-variant
rs1000008992 -- 44,745,484(+) CGATC(A/G/T)TCATC intron-variant
rs1000024187 -- 44,772,361(+) GCTAT(-/A)AAATA intron-variant
rs1000067482 -- 44,782,916(+) GCTCA(A/G)TTTGG intron-variant
rs1000179013 -- 44,809,940(+) TGTGA(C/T)CATGT intron-variant, upstream-variant-2KB

Relevant External Links for MRPS30-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS30-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MRPS30-DT Gene

Disorders for MRPS30-DT Gene

Relevant External Links for MRPS30-DT

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPS30-DT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPS30-DT

No disorders were found for MRPS30-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPS30-DT Gene

Publications for MRPS30-DT Gene

  1. Evidence that the 5p12 Variant rs10941679 Confers Susceptibility to Estrogen-Receptor-Positive Breast Cancer through FGF10 and MRPS30 Regulation. (PMID: 27640304) Ghoussaini M … Edwards SL (American journal of human genetics 2016) 2 3 60
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 60
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for MRPS30-DT Gene

Sources for MRPS30-DT Gene

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