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Aliases for MRPS28 Gene

Aliases for MRPS28 Gene

  • Mitochondrial Ribosomal Protein S28 2 3 5
  • 28S Ribosomal Protein S35, Mitochondrial 3 4
  • MRP-S28 3 4
  • MRP-S35 3 4
  • MRPS35 3 4
  • S28mt 3 4
  • S35mt 3 4
  • 28S Ribosomal Protein S28, Mitochondrial 3
  • Mitochondrial 28S Ribosomal Protein S35 3
  • HSPC007 3

External Ids for MRPS28 Gene

Previous GeneCards Identifiers for MRPS28 Gene

  • GC08M079718
  • GC08M080879
  • GC08M080554
  • GC08M080881
  • GC08M080993
  • GC08M076320
  • GC08M080830

Summaries for MRPS28 Gene

Entrez Gene Summary for MRPS28 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that has been called mitochondrial ribosomal protein S35 in the literature. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPS28 Gene

MRPS28 (Mitochondrial Ribosomal Protein S28) is a Protein Coding gene. Among its related pathways are Mitochondrial translation and Organelle biogenesis and maintenance. GO annotations related to this gene include poly(A) RNA binding.

Gene Wiki entry for MRPS28 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPS28 Gene

Genomics for MRPS28 Gene

Regulatory Elements for MRPS28 Gene

Enhancers for MRPS28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F079766 1.4 FANTOM5 ENCODE 15.9 +261.9 261863 3.9 PKNOX1 WRNIP1 ARID4B SIN3A ZNF48 ZNF2 ZNF121 GLIS2 ZNF207 FOS MRPS28 IL7 RNU7-85P LOC105375914 LOC101927040 HEY1 LINC01607 GC08M079801
GH08F080078 1.7 FANTOM5 Ensembl ENCODE 10.3 -52.1 -52109 8.5 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ELK1 ZNF143 TPD52 MRPS28 LOC105375918 ENSG00000254205
GH08F079760 1.1 Ensembl ENCODE 10.7 +269.4 269389 1.4 TBP HDAC1 ATF1 FOS CREM CEBPB ELF1 TFDP1 SMARCA4 PBX2 MRPS28 HEY1 LOC105375916
GH08F080053 0.9 Ensembl ENCODE 11.3 -24.5 -24532 1.9 MTA2 BMI1 TBX21 EP300 SP1 CBX5 POLR2A EED IKZF1 NBN TPD52 MRPS28 RNU6-1213P ENSG00000272264 LOC105375919
GH08F079684 0.7 ENCODE 11.6 +345.5 345499 0.2 CTCF YBX1 RAD21 RFX5 ZKSCAN1 ZNF664 GATA3 ZNF366 SMC3 ZNF654 MRPS28 RNU7-85P TPD52 LOC105375916 HEY1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPS28 on UCSC Golden Path with GeneCards custom track

Promoters for MRPS28 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001442517 289 2001 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for MRPS28 Gene

Chromosome:
8
Start:
79,918,717 bp from pter
End:
80,030,289 bp from pter
Size:
111,573 bases
Orientation:
Minus strand

Genomic View for MRPS28 Gene

Genes around MRPS28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPS28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPS28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS28 Gene

Proteins for MRPS28 Gene

  • Protein details for MRPS28 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2Q9-RT28_HUMAN
    Recommended name:
    28S ribosomal protein S28, mitochondrial
    Protein Accession:
    Q9Y2Q9
    Secondary Accessions:
    • B2RDZ7
    • Q96Q21

    Protein attributes for MRPS28 Gene

    Size:
    187 amino acids
    Molecular mass:
    20843 Da
    Quaternary structure:
    • Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

    Three dimensional structures from OCA and Proteopedia for MRPS28 Gene

neXtProt entry for MRPS28 Gene

Post-translational modifications for MRPS28 Gene

  • Ubiquitination at Lys 75
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for MRPS28 Gene

Domains & Families for MRPS28 Gene

Gene Families for MRPS28 Gene

Protein Domains for MRPS28 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MRPS28 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MRPS28: view

No data available for UniProtKB/Swiss-Prot for MRPS28 Gene

Function for MRPS28 Gene

Gene Ontology (GO) - Molecular Function for MRPS28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with MRPS28: view
genes like me logo Genes that share phenotypes with MRPS28: view

Animal Model Products

miRNA for MRPS28 Gene

miRTarBase miRNAs that target MRPS28

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPS28 Gene

Localization for MRPS28 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPS28 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRPS28 gene
Compartment Confidence
mitochondrion 5
cytosol 1

Gene Ontology (GO) - Cellular Components for MRPS28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005763 mitochondrial small ribosomal subunit TAS 10938081
GO:0005840 ribosome IEA --
GO:0030529 intracellular ribonucleoprotein complex IEA --
genes like me logo Genes that share ontologies with MRPS28: view

Pathways & Interactions for MRPS28 Gene

genes like me logo Genes that share pathways with MRPS28: view

Gene Ontology (GO) - Biological Process for MRPS28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPS28: view

No data available for SIGNOR curated interactions for MRPS28 Gene

Transcripts for MRPS28 Gene

Unigene Clusters for MRPS28 Gene

Mitochondrial ribosomal protein S28:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS28 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d
SP1: - - -
SP2: - -
SP3: -
SP4: - - - - -
SP5:

Relevant External Links for MRPS28 Gene

GeneLoc Exon Structure for
MRPS28
ECgene alternative splicing isoforms for
MRPS28

Expression for MRPS28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MRPS28 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for MRPS28 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (10.6), Breast (10.1), Lung (9.6), and Pancreas (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MRPS28 Gene



Protein tissue co-expression partners for MRPS28 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPS28 Gene:

MRPS28

SOURCE GeneReport for Unigene cluster for MRPS28 Gene:

Hs.521124
genes like me logo Genes that share expression patterns with MRPS28: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MRPS28 Gene

Orthologs for MRPS28 Gene

This gene was present in the common ancestor of animals.

Orthologs for MRPS28 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPS28 34 35
  • 98.22 (n)
cow
(Bos Taurus)
Mammalia MRPS28 34 35
  • 86.56 (n)
dog
(Canis familiaris)
Mammalia MRPS28 34 35
  • 84.59 (n)
mouse
(Mus musculus)
Mammalia Mrps28 34 16 35
  • 76.52 (n)
oppossum
(Monodelphis domestica)
Mammalia MRPS28 35
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100124857 34
  • 64.5 (n)
Str.1431 34
zebrafish
(Danio rerio)
Actinopterygii mrps28 34 35
  • 56.59 (n)
Dr.14825 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4190 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006650 34
  • 54.74 (n)
fruit fly
(Drosophila melanogaster)
Insecta mRpS28 34 35
  • 54.14 (n)
worm
(Caenorhabditis elegans)
Secernentea mrps-28 35
  • 32 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 26 (a)
OneToOne
Species where no ortholog for MRPS28 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPS28 Gene

ENSEMBL:
Gene Tree for MRPS28 (if available)
TreeFam:
Gene Tree for MRPS28 (if available)

Paralogs for MRPS28 Gene

genes like me logo Genes that share paralogs with MRPS28: view

No data available for Paralogs for MRPS28 Gene

Variants for MRPS28 Gene

Sequence variations from dbSNP and Humsavar for MRPS28 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1008122 -- 79,989,289(-) CTGAT(C/T)CAAGC intron-variant
rs10087841 -- 79,990,104(+) TGCAG(C/T)GAGCT intron-variant
rs10089358 -- 80,002,291(+) TTATA(C/T)ATGAT intron-variant
rs10094162 -- 80,012,819(+) CATGT(A/G)TTGTC intron-variant
rs10094992 -- 79,961,243(+) AGAAA(C/T)GCAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MRPS28 Gene

Variant ID Type Subtype PubMed ID
nsv951447 CNV duplication 24416366
esv3617767 CNV gain 21293372
esv3617766 CNV loss 21293372
esv3617765 CNV loss 21293372
esv3572851 CNV loss 25503493
esv3332416 CNV insertion 20981092
esv2666906 CNV deletion 23128226

Variation tolerance for MRPS28 Gene

Residual Variation Intolerance Score: 78.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.05; 60.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPS28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPS28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPS28 Gene

Disorders for MRPS28 Gene

Relevant External Links for MRPS28

Genetic Association Database (GAD)
MRPS28
Human Genome Epidemiology (HuGE) Navigator
MRPS28
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPS28

No disorders were found for MRPS28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPS28 Gene

Publications for MRPS28 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4 64
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The small subunit of the mammalian mitochondrial ribosome: identification of the full complement of ribosomal proteins present. (PMID: 11279123) Koc E.C. … Spremulli L.L. (J. Biol. Chem. 2001) 2 3 64
  5. The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PMID: 11543634) Kenmochi N. … Tanaka T. (Genomics 2001) 3 4 64

Products for MRPS28 Gene

Sources for MRPS28 Gene

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