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Aliases for MRPS18C Gene

Aliases for MRPS18C Gene

  • Mitochondrial Ribosomal Protein S18C 2 3
  • 28S Ribosomal Protein S18-1, Mitochondrial 3 4
  • MRP-S18-1 3 4
  • MRP-S18-C 3 4
  • Mrps18-C 3 4
  • MRPS18-1 3 6
  • S18mt-C 3 4
  • 28S Ribosomal Protein S18c, Mitochondrial 3
  • Mitochondrial Ribosomal Protein S18-1 3
  • CGI-134 3

External Ids for MRPS18C Gene

Summaries for MRPS18C Gene

Entrez Gene Summary for MRPS18C Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. Pseudogenes corresponding to this gene are found on chromosomes 8p, 12p, 15q, and 22q. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPS18C Gene

MRPS18C (Mitochondrial Ribosomal Protein S18C) is a Protein Coding gene. Among its related pathways are CFTR translational fidelity (class I mutations). GO annotations related to this gene include structural constituent of ribosome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPS18C Gene

Genomics for MRPS18C Gene

Genomic Location for MRPS18C Gene

Start:
83,455,932 bp from pter
End:
83,469,735 bp from pter
Size:
13,804 bases
Orientation:
Plus strand

Genomic View for MRPS18C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MRPS18C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPS18C Gene

Regulatory Elements for MRPS18C Gene

Proteins for MRPS18C Gene

  • Protein details for MRPS18C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3D5-RT18C_HUMAN
    Recommended name:
    28S ribosomal protein S18c, mitochondrial
    Protein Accession:
    Q9Y3D5
    Secondary Accessions:

    Protein attributes for MRPS18C Gene

    Size:
    142 amino acids
    Molecular mass:
    15850 Da
    Quaternary structure:
    • Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins

neXtProt entry for MRPS18C Gene

Proteomics data for MRPS18C Gene at MOPED

Post-translational modifications for MRPS18C Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys125

Other Protein References for MRPS18C Gene

No data available for DME Specific Peptides for MRPS18C Gene

Domains for MRPS18C Gene

Gene Families for MRPS18C Gene

HGNC:
  • MRPS :Mitochondrial ribosomal proteins / small subunits

Protein Domains for MRPS18C Gene

UniProtKB/Swiss-Prot:

RT18C_HUMAN
Family:
  • Belongs to the ribosomal protein S18P family.:
    • Q9Y3D5
genes like me logo Genes that share domains with MRPS18C: view

Function for MRPS18C Gene

Gene Ontology (GO) - Molecular Function for MRPS18C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome NAS 11279123
genes like me logo Genes that share ontologies with MRPS18C: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MRPS18C Gene

Localization for MRPS18C Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPS18C Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MRPS18C Gene COMPARTMENTS Subcellular localization image for MRPS18C gene
Compartment Confidence
mitochondrion 5
extracellular 2
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for MRPS18C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005739 mitochondrion --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005763 mitochondrial small ribosomal subunit IDA 11279123
GO:0005840 ribosome --
genes like me logo Genes that share ontologies with MRPS18C: view

Pathways for MRPS18C Gene

SuperPathways for MRPS18C Gene

Superpath Contained pathways
1 CFTR translational fidelity (class I mutations)
.54
genes like me logo Genes that share pathways with MRPS18C: view

Pathways by source for MRPS18C Gene

1 KEGG pathway for MRPS18C Gene

Interacting Proteins for MRPS18C Gene

Gene Ontology (GO) - Biological Process for MRPS18C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation NAS 11279123
GO:0006996 organelle organization TAS --
GO:0032543 mitochondrial translation TAS --
GO:0070124 mitochondrial translational initiation TAS --
GO:0070125 mitochondrial translational elongation TAS --
genes like me logo Genes that share ontologies with MRPS18C: view

Transcripts for MRPS18C Gene

Unigene Clusters for MRPS18C Gene

Mitochondrial ribosomal protein S18C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MRPS18C Gene

No ASD Table

Relevant External Links for MRPS18C Gene

GeneLoc Exon Structure for
MRPS18C
ECgene alternative splicing isoforms for
MRPS18C

Expression for MRPS18C Gene

mRNA expression in normal human tissues for MRPS18C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MRPS18C Gene

SOURCE GeneReport for Unigene cluster for MRPS18C Gene Hs.436161

genes like me logo Genes that share expressions with MRPS18C: view

Orthologs for MRPS18C Gene

This gene was present in the common ancestor of animals.

Orthologs for MRPS18C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPS18C 36
  • 99.77 (n)
  • 100 (a)
MRPS18C 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MRPS18C 36
  • 87.94 (n)
  • 82.98 (a)
MRPS18C 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MRPS18C 36
  • 90.31 (n)
  • 83.69 (a)
mouse
(Mus musculus)
Mammalia Mrps18c 36
  • 86.09 (n)
  • 82.01 (a)
Mrps18c 16
Mrps18c 37
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MRPS18C 37
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mrps18c 36
  • 84.41 (n)
  • 79.86 (a)
chicken
(Gallus gallus)
Aves MRPS18C 36
  • 65.64 (n)
  • 61.54 (a)
MRPS18C 37
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MRPS18C 37
  • 73 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.20569 36
tropical clawed frog
(Silurana tropicalis)
Amphibia mrps18c 36
  • 64.81 (n)
  • 64.29 (a)
Str.416 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.12181 36
zebrafish
(Danio rerio)
Actinopterygii Dr.14273 36
mrps18c 36
  • 64.69 (n)
  • 64.36 (a)
mrps18c 37
  • 48 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008773 36
  • 53.05 (n)
  • 47.31 (a)
fruit fly
(Drosophila melanogaster)
Insecta mRpS18C 36
  • 53.76 (n)
  • 53.76 (a)
mRpS18C 37
  • 40 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T14B4.2 36
  • 57.25 (n)
  • 48.91 (a)
T14B4.2 37
  • 35 (a)
OneToOne
Species with no ortholog for MRPS18C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPS18C Gene

ENSEMBL:
Gene Tree for MRPS18C (if available)
TreeFam:
Gene Tree for MRPS18C (if available)

Paralogs for MRPS18C Gene

genes like me logo Genes that share paralogs with MRPS18C: view

No data available for Paralogs for MRPS18C Gene

Variants for MRPS18C Gene

Sequence variations from dbSNP and Humsavar for MRPS18C Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs6852306 -- 83,458,567(+) TTATA(A/G)TTCTA intron-variant
rs11397235 -- 83,458,646(+) CTCTG(-/T)TTTTT intron-variant
rs11449455 -- 83,459,225(+) CCAAG(-/A)AATTA intron-variant
rs12505955 -- 83,459,802(+) GGTAT(G/T)TTCTT intron-variant
rs13142756 -- 83,460,344(+) GAGAT(G/T)GGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MRPS18C Gene

Variant ID Type Subtype PubMed ID
nsv829992 CNV Loss 17160897
nsv829994 CNV Loss 17160897
nsv879512 CNV Gain 21882294

Relevant External Links for MRPS18C Gene

HapMap Linkage Disequilibrium report
MRPS18C

Disorders for MRPS18C Gene

Relevant External Links for MRPS18C

Genetic Association Database (GAD)
MRPS18C
Human Genome Epidemiology (HuGE) Navigator
MRPS18C
genes like me logo Genes that share disorders with MRPS18C: view

No data available for UniProtKB/Swiss-Prot for MRPS18C Gene

Publications for MRPS18C Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4
  2. The small subunit of the mammalian mitochondrial ribosome: identification of the full complement of ribosomal proteins present. (PMID: 11279123) Koc E.C. … Spremulli L.L. (J. Biol. Chem. 2001) 2 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 49
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for MRPS18C Gene

Sources for MRPS18C Gene

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