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Aliases for MRPL9 Gene

Aliases for MRPL9 Gene

  • Mitochondrial Ribosomal Protein L9 2 3
  • L9mt 3 4
  • 39S Ribosomal Protein L9, Mitochondrial 3
  • MRP-L9 4

External Ids for MRPL9 Gene

Previous GeneCards Identifiers for MRPL9 Gene

  • GC01M149572
  • GC01M147514
  • GC01M148507
  • GC01M148948
  • GC01M148545
  • GC01M149998
  • GC01M151732
  • GC01M123108

Summaries for MRPL9 Gene

Entrez Gene Summary for MRPL9 Gene

  • This is a nuclear gene encoding a protein component of the 39S subunit of the mitochondrial ribosome. Alternative splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Jul 2014]

GeneCards Summary for MRPL9 Gene

MRPL9 (Mitochondrial Ribosomal Protein L9) is a Protein Coding gene. Among its related pathways are CFTR translational fidelity (class I mutations). GO annotations related to this gene include structural constituent of ribosome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL9 Gene

Genomics for MRPL9 Gene

Regulatory Elements for MRPL9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MRPL9 Gene

Start:
151,759,643 bp from pter
End:
151,763,564 bp from pter
Size:
3,922 bases
Orientation:
Minus strand

Genomic View for MRPL9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MRPL9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPL9 Gene

Proteins for MRPL9 Gene

  • Protein details for MRPL9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYD2-RM09_HUMAN
    Recommended name:
    39S ribosomal protein L9, mitochondrial
    Protein Accession:
    Q9BYD2
    Secondary Accessions:
    • B2RD99
    • Q5SZR2
    • Q9BSW8

    Protein attributes for MRPL9 Gene

    Size:
    267 amino acids
    Molecular mass:
    30243 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for MRPL9 Gene

neXtProt entry for MRPL9 Gene

Proteomics data for MRPL9 Gene at MOPED

Post-translational modifications for MRPL9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MRPL9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MRPL9 Gene

Domains for MRPL9 Gene

Gene Families for MRPL9 Gene

HGNC:
  • MRPL :Mitochondrial ribosomal proteins / large subunits

Protein Domains for MRPL9 Gene

Suggested Antigen Peptide Sequences for MRPL9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYD2

UniProtKB/Swiss-Prot:

RM09_HUMAN :
  • Q9BYD2
Family:
  • Belongs to the ribosomal protein L9P family.
genes like me logo Genes that share domains with MRPL9: view

Function for MRPL9 Gene

Gene Ontology (GO) - Molecular Function for MRPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome NAS 11543634
GO:0005515 protein binding IPI 25416956
GO:0044822 poly(A) RNA binding IDA 22681889
genes like me logo Genes that share ontologies with MRPL9: view

Phenotypes for MRPL9 Gene

GenomeRNAi human phenotypes for MRPL9:
genes like me logo Genes that share phenotypes with MRPL9: view

Animal Model Products

CRISPR Products

miRNA for MRPL9 Gene

miRTarBase miRNAs that target MRPL9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for MRPL9 Gene

Localization for MRPL9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPL9 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MRPL9 Gene COMPARTMENTS Subcellular localization image for MRPL9 gene
Compartment Confidence
mitochondrion 5
nucleus 2

Gene Ontology (GO) - Cellular Components for MRPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005761 mitochondrial ribosome NAS 11543634
GO:0005840 ribosome --
genes like me logo Genes that share ontologies with MRPL9: view

Pathways for MRPL9 Gene

SuperPathways for MRPL9 Gene

Superpath Contained pathways
1 CFTR translational fidelity (class I mutations)
.54
genes like me logo Genes that share pathways with MRPL9: view

Pathways by source for MRPL9 Gene

1 KEGG pathway for MRPL9 Gene

Gene Ontology (GO) - Biological Process for MRPL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation NAS 11543634
GO:0006996 organelle organization TAS --
GO:0032543 mitochondrial translation TAS --
GO:0070124 mitochondrial translational initiation TAS --
GO:0070125 mitochondrial translational elongation TAS --
genes like me logo Genes that share ontologies with MRPL9: view

Transcripts for MRPL9 Gene

Unigene Clusters for MRPL9 Gene

Mitochondrial ribosomal protein L9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MRPL9

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MRPL9

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL9 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c
SP1: - - - - -
SP2: - - - - - -
SP3: - - - - - - - -
SP4: - - - -
SP5: - - - - -
SP6: -
SP7:
SP8: - - -
SP9: -

Relevant External Links for MRPL9 Gene

GeneLoc Exon Structure for
MRPL9
ECgene alternative splicing isoforms for
MRPL9

Expression for MRPL9 Gene

mRNA expression in normal human tissues for MRPL9 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MRPL9 Gene

SOURCE GeneReport for Unigene cluster for MRPL9 Gene Hs.288936

genes like me logo Genes that share expressions with MRPL9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MRPL9 Gene

Orthologs for MRPL9 Gene

This gene was present in the common ancestor of animals.

Orthologs for MRPL9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPL9 35
  • 99.63 (n)
  • 99.63 (a)
MRPL9 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MRPL9 35
  • 83.63 (n)
  • 81.25 (a)
MRPL9 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mrpl9 35
  • 84.22 (n)
  • 83.59 (a)
Mrpl9 16
Mrpl9 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia mrpl9 35
  • 83.8 (n)
  • 83.27 (a)
chicken
(Gallus gallus)
Aves MRPL9 35
  • 65.56 (n)
  • 69.17 (a)
MRPL9 36
  • 59 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MRPL9 36
  • 58 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.2544 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.20048 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8308 35
zebrafish
(Danio rerio)
Actinopterygii mrpl9 35
  • 59.2 (n)
  • 58.71 (a)
mrpl9 36
  • 49 (a)
OneToOne
wufa98b03 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000950 35
  • 46.5 (n)
  • 36.5 (a)
fruit fly
(Drosophila melanogaster)
Insecta mRpL9 35
  • 45.17 (n)
  • 31.5 (a)
mRpL9 36
  • 26 (a)
OneToOne
Species with no ortholog for MRPL9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MRPL9 Gene

ENSEMBL:
Gene Tree for MRPL9 (if available)
TreeFam:
Gene Tree for MRPL9 (if available)

Paralogs for MRPL9 Gene

Pseudogenes.org Pseudogenes for MRPL9 Gene

genes like me logo Genes that share paralogs with MRPL9: view

No data available for Paralogs for MRPL9 Gene

Variants for MRPL9 Gene

Sequence variations from dbSNP and Humsavar for MRPL9 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs8480 - 151,760,859(-) ACCAG(A/C)AGAGC reference, missense, nc-transcript-variant
rs10888432 -- 151,759,584(+) CTGTG(A/G)CTCAA downstream-variant-500B
rs10888433 -- 151,760,224(+) AGGTA(A/G)GTAAG intron-variant
rs10888434 -- 151,760,439(+) AGGCA(C/T)GGTGG intron-variant
rs11204882 -- 151,760,549(+) TCCAG(C/T)CTGGG intron-variant

Relevant External Links for MRPL9 Gene

HapMap Linkage Disequilibrium report
MRPL9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MRPL9 Gene

Disorders for MRPL9 Gene

Relevant External Links for MRPL9

Genetic Association Database (GAD)
MRPL9
Human Genome Epidemiology (HuGE) Navigator
MRPL9
genes like me logo Genes that share disorders with MRPL9: view

No data available for UniProtKB/Swiss-Prot for MRPL9 Gene

Publications for MRPL9 Gene

  1. Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. (PMID: 11279069) Suzuki T. … Watanabe K. (J. Biol. Chem. 2001) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J. … Peltonen L. (PLoS Genet. 2010) 3 48
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for MRPL9 Gene

Sources for MRPL9 Gene

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