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Aliases for MRPL52 Gene

Aliases for MRPL52 Gene

  • Mitochondrial Ribosomal Protein L52 2 3 5
  • MRP-L52 3 4
  • L52mt 3 4
  • 39S Ribosomal Protein L52, Mitochondrial 3

External Ids for MRPL52 Gene

Previous GeneCards Identifiers for MRPL52 Gene

  • GC00U991113
  • GC14P021289
  • GC14P022368
  • GC14P023299
  • GC14P003416

Summaries for MRPL52 Gene

Entrez Gene Summary for MRPL52 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein which has no bacterial homolog. Multiple transcript variants encoding different protein isoforms were identified through sequence analysis. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPL52 Gene

MRPL52 (Mitochondrial Ribosomal Protein L52) is a Protein Coding gene. Among its related pathways are Mitochondrial translation and Organelle biogenesis and maintenance. GO annotations related to this gene include structural constituent of ribosome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL52 Gene

Genomics for MRPL52 Gene

Regulatory Elements for MRPL52 Gene

Enhancers for MRPL52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around MRPL52 on UCSC Golden Path with GeneCards custom track

Promoters for MRPL52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for MRPL52 Gene

Chromosome:
14
Start:
22,829,851 bp from pter
End:
22,835,037 bp from pter
Size:
5,187 bases
Orientation:
Plus strand

Genomic View for MRPL52 Gene

Genes around MRPL52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPL52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPL52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPL52 Gene

Proteins for MRPL52 Gene

  • Protein details for MRPL52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86TS9-RM52_HUMAN
    Recommended name:
    39S ribosomal protein L52, mitochondrial
    Protein Accession:
    Q86TS9
    Secondary Accessions:
    • A6NMQ8
    • A8MXK5
    • A8MYI6
    • G3XCN9
    • Q6NVH8

    Protein attributes for MRPL52 Gene

    Size:
    123 amino acids
    Molecular mass:
    13664 Da
    Quaternary structure:
    • Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
    SequenceCaution:
    • Sequence=CAD66556.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for MRPL52 Gene

    Alternative splice isoforms for MRPL52 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MRPL52 Gene

Post-translational modifications for MRPL52 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MRPL52 Gene

Domains & Families for MRPL52 Gene

Gene Families for MRPL52 Gene

Protein Domains for MRPL52 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MRPL52 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MRPL52: view

No data available for UniProtKB/Swiss-Prot for MRPL52 Gene

Function for MRPL52 Gene

Gene Ontology (GO) - Molecular Function for MRPL52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome ISS --
genes like me logo Genes that share ontologies with MRPL52: view
genes like me logo Genes that share phenotypes with MRPL52: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPL52 Gene

Localization for MRPL52 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPL52 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MRPL52 Gene COMPARTMENTS Subcellular localization image for MRPL52 gene
Compartment Confidence
mitochondrion 5
nucleus 2
cytosol 1
extracellular 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MRPL52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005762 mitochondrial large ribosomal subunit ISS --
genes like me logo Genes that share ontologies with MRPL52: view

Pathways & Interactions for MRPL52 Gene

genes like me logo Genes that share pathways with MRPL52: view

Gene Ontology (GO) - Biological Process for MRPL52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation ISS --
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPL52: view

No data available for SIGNOR curated interactions for MRPL52 Gene

Drugs & Compounds for MRPL52 Gene

No Compound Related Data Available

Transcripts for MRPL52 Gene

Unigene Clusters for MRPL52 Gene

Mitochondrial ribosomal protein L52:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL52 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - -
SP4: - - - -
SP5: - - - - -
SP6: - - - - - - -
SP7: - - - - -
SP8: - - -
SP9:
SP10: -
SP11: - - - - - -
SP12:

Relevant External Links for MRPL52 Gene

GeneLoc Exon Structure for
MRPL52
ECgene alternative splicing isoforms for
MRPL52

Expression for MRPL52 Gene

mRNA expression in normal human tissues for MRPL52 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for MRPL52 Gene

This gene is overexpressed in Heart (43.0) and Lung (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPL52 Gene



NURSA nuclear receptor signaling pathways regulating expression of MRPL52 Gene:

MRPL52

SOURCE GeneReport for Unigene cluster for MRPL52 Gene:

Hs.355935
genes like me logo Genes that share expression patterns with MRPL52: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MRPL52 Gene

Orthologs for MRPL52 Gene

This gene was present in the common ancestor of animals.

Orthologs for MRPL52 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MRPL52 34
  • 86.34 (n)
  • 85.25 (a)
MRPL52 35
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MRPL52 34
  • 89.62 (n)
  • 86.89 (a)
MRPL52 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mrpl52 34
  • 86.78 (n)
  • 85.12 (a)
Mrpl52 16
Mrpl52 35
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia MRPL52 34
  • 99.45 (n)
  • 98.36 (a)
MRPL52 35
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mrpl52 34
  • 84.57 (n)
  • 81.82 (a)
oppossum
(Monodelphis domestica)
Mammalia MRPL52 35
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MRPL52 35
  • 43 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mrpl52 34
  • 54.13 (n)
  • 55.05 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100007768 34
  • 52.65 (n)
  • 51.4 (a)
MRPL52 35
  • 44 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta mRpL52 35
  • 32 (a)
OneToOne
Species where no ortholog for MRPL52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MRPL52 Gene

ENSEMBL:
Gene Tree for MRPL52 (if available)
TreeFam:
Gene Tree for MRPL52 (if available)

Paralogs for MRPL52 Gene

No data available for Paralogs for MRPL52 Gene

Variants for MRPL52 Gene

Sequence variations from dbSNP and Humsavar for MRPL52 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1135641 - 22,829,926(-) CAGTC(A/C/T)CTAAA reference, missense, utr-variant-5-prime
rs4982685 - 22,830,077(+) CAGCG(C/T)AGCCG reference, missense, utr-variant-5-prime
rs11538931 - 22,834,260(+) AAGGA(A/G)GCAGG reference, synonymous-codon, missense
rs9323221 -- 22,829,265(+) CTACG(C/T)CTAAT upstream-variant-2KB
rs9646148 -- 22,830,886(+) GCAAA(G/T)CCAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MRPL52 Gene

Variant ID Type Subtype PubMed ID
esv3633763 CNV gain 21293372
nsv563998 CNV gain 21841781

Variation tolerance for MRPL52 Gene

Residual Variation Intolerance Score: 73.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.61; 13.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPL52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPL52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPL52 Gene

Disorders for MRPL52 Gene

Relevant External Links for MRPL52

Genetic Association Database (GAD)
MRPL52
Human Genome Epidemiology (HuGE) Navigator
MRPL52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPL52

No disorders were found for MRPL52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPL52 Gene

Publications for MRPL52 Gene

  1. The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. (PMID: 11551941) Koc E.C. … Spremulli L.L. (J. Biol. Chem. 2001) 2 3 4 65
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  4. Evolution of a protein-rich mitochondrial ribosome: implications for human genetic disease. (PMID: 11943462) O'Brien T.W. (Gene 2002) 2 3 65
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 65

Products for MRPL52 Gene

Sources for MRPL52 Gene

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