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Aliases for MRPL49 Gene

Aliases for MRPL49 Gene

  • Mitochondrial Ribosomal Protein L49 2 3 5
  • Neighbor Of FAU 2 3 4
  • Next To FAU 2 3
  • C11orf4 3 4
  • MRP-L49 3 4
  • L49mt 3 4
  • NOF1 3 4
  • NOF 3 4
  • 39S Ribosomal Protein L49, Mitochondrial 3
  • Chromosome 11 Open Reading Frame 4 2
  • Protein NOF1 4

External Ids for MRPL49 Gene

Previous HGNC Symbols for MRPL49 Gene

  • C11orf4

Previous GeneCards Identifiers for MRPL49 Gene

  • GC11P067405
  • GC11P066571
  • GC11P065139
  • GC11P064665
  • GC11P064646
  • GC11P064889
  • GC11P061216

Summaries for MRPL49 Gene

Entrez Gene Summary for MRPL49 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. Pseudogenes corresponding to this gene are found on chromosomes 5q and 8p. [provided by RefSeq, May 2011]

GeneCards Summary for MRPL49 Gene

MRPL49 (Mitochondrial Ribosomal Protein L49) is a Protein Coding gene. Diseases associated with MRPL49 include Neonatal Myasthenia Gravis and Glossopharyngeal Neuralgia. Among its related pathways are Mitochondrial translation and Organelle biogenesis and maintenance. GO annotations related to this gene include structural constituent of ribosome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL49 Gene

Genomics for MRPL49 Gene

Regulatory Elements for MRPL49 Gene

Enhancers for MRPL49 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F065095 0.2 ENCODE 21.4 -25.5 -25491 2.2 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 FAU ZFPL1 MRPL49 EIF1AD PCNX3 TRMT112 ZNHIT2 SSSCA1 NEAT1 FRMD8
GH11F064267 0.2 ENCODE 18 -851.5 -851484 7.2 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZFPL1 TRMT112 PLCB3 POLA2 LOC102723878 FAU MRPL49 TRPT1 ENSG00000257086 C11orf84
GH11F064237 0.5 Ensembl ENCODE 18 -876.9 -876865 16.6 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC SSRP1 TRPT1 PPP1R14B LOC102723878 VEGFB ENSG00000257086 MRPL49 TRMT112 KCNK4 ZFPL1 PLCB3
GH11F065851 0.7 ENCODE 18 +735.3 735302 12.2 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SNX32 EIF1AD ZFPL1 PCNX3 POLA2 MRPL11 FRMD8 ENSG00000258297 NEAT1 ENSG00000255320
GH11F065149 0.8 Ensembl ENCODE 12.5 +29.1 29148 3.9 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF766 ZNF143 FOS SPDYC MRPL49 CAPN1 PGAM1P8 LOC728975 FAU ZNHIT2 POLA2 SF3B2 RNU2-23P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MRPL49 on UCSC Golden Path with GeneCards custom track

Promoters for MRPL49 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000563751 117 2201 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1

Genomic Location for MRPL49 Gene

Chromosome:
11
Start:
65,122,183 bp from pter
End:
65,127,371 bp from pter
Size:
5,189 bases
Orientation:
Plus strand

Genomic View for MRPL49 Gene

Genes around MRPL49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPL49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPL49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPL49 Gene

Proteins for MRPL49 Gene

  • Protein details for MRPL49 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13405-RM49_HUMAN
    Recommended name:
    39S ribosomal protein L49, mitochondrial
    Protein Accession:
    Q13405
    Secondary Accessions:
    • B2R4G6

    Protein attributes for MRPL49 Gene

    Size:
    166 amino acids
    Molecular mass:
    19198 Da
    Quaternary structure:
    • Interacts with OXA1L.

    Three dimensional structures from OCA and Proteopedia for MRPL49 Gene

neXtProt entry for MRPL49 Gene

Post-translational modifications for MRPL49 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MRPL49 Gene

No data available for DME Specific Peptides for MRPL49 Gene

Domains & Families for MRPL49 Gene

Gene Families for MRPL49 Gene

Protein Domains for MRPL49 Gene

Suggested Antigen Peptide Sequences for MRPL49 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q13405

UniProtKB/Swiss-Prot:

RM49_HUMAN :
  • Belongs to the ribosomal protein L49em family.
Family:
  • Belongs to the ribosomal protein L49em family.
genes like me logo Genes that share domains with MRPL49: view

Function for MRPL49 Gene

Gene Ontology (GO) - Molecular Function for MRPL49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IBA --
GO:0005515 protein binding IPI 20601428
genes like me logo Genes that share ontologies with MRPL49: view
genes like me logo Genes that share phenotypes with MRPL49: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPL49 Gene

Localization for MRPL49 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPL49 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MRPL49 Gene COMPARTMENTS Subcellular localization image for MRPL49 gene
Compartment Confidence
mitochondrion 5

Gene Ontology (GO) - Cellular Components for MRPL49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005761 mitochondrial ribosome IDA 20601428
GO:0005762 mitochondrial large ribosomal subunit IDA,IBA 25278503
genes like me logo Genes that share ontologies with MRPL49: view

Pathways & Interactions for MRPL49 Gene

genes like me logo Genes that share pathways with MRPL49: view

Gene Ontology (GO) - Biological Process for MRPL49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPL49: view

No data available for SIGNOR curated interactions for MRPL49 Gene

Transcripts for MRPL49 Gene

Unigene Clusters for MRPL49 Gene

Mitochondrial ribosomal protein L49:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL49 Gene

No ASD Table

Relevant External Links for MRPL49 Gene

GeneLoc Exon Structure for
MRPL49
ECgene alternative splicing isoforms for
MRPL49

Expression for MRPL49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MRPL49 Gene

Protein differential expression in normal tissues from HIPED for MRPL49 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (19.3) and Pancreas (9.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPL49 Gene



Protein tissue co-expression partners for MRPL49 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPL49 Gene:

MRPL49

SOURCE GeneReport for Unigene cluster for MRPL49 Gene:

Hs.744882

mRNA Expression by UniProt/SwissProt for MRPL49 Gene:

Q13405-RM49_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with MRPL49: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for MRPL49 Gene

Orthologs for MRPL49 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MRPL49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPL49 34 35
  • 99.2 (n)
dog
(Canis familiaris)
Mammalia MRPL49 34 35
  • 89.16 (n)
cow
(Bos Taurus)
Mammalia MRPL49 34 35
  • 86.95 (n)
mouse
(Mus musculus)
Mammalia Mrpl49 34 16 35
  • 82.73 (n)
rat
(Rattus norvegicus)
Mammalia Mrpl49 34
  • 82.13 (n)
oppossum
(Monodelphis domestica)
Mammalia MRPL49 35
  • 33 (a)
OneToOne
chicken
(Gallus gallus)
Aves MRPL49 34
  • 63.45 (n)
lizard
(Anolis carolinensis)
Reptilia MRPL49 35
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mrpl49 34
  • 61.52 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC558658 34
  • 64.32 (n)
BX248510.1 35
  • 51 (a)
OneToOne
Dr.13624 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1781 34
fruit fly
(Drosophila melanogaster)
Insecta mRpL49 35
  • 32 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea mrpl-49 35
  • 27 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes IMG2 37
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5168 35
  • 35 (a)
OneToOne
Species where no ortholog for MRPL49 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPL49 Gene

ENSEMBL:
Gene Tree for MRPL49 (if available)
TreeFam:
Gene Tree for MRPL49 (if available)

Paralogs for MRPL49 Gene

Pseudogenes.org Pseudogenes for MRPL49 Gene

genes like me logo Genes that share paralogs with MRPL49: view

No data available for Paralogs for MRPL49 Gene

Variants for MRPL49 Gene

Sequence variations from dbSNP and Humsavar for MRPL49 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10088 -- 65,127,730(-) TTTCC(C/T)CTGCA downstream-variant-500B, utr-variant-3-prime
rs1061252 -- 65,120,771(-) ACAGG(A/T)CGGGC upstream-variant-2KB, reference, synonymous-codon
rs1063426 -- 65,127,278(+) CACCA(A/T)TTGTT nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1064907 -- 65,120,719(-) TGCCC(A/C)CCTTT upstream-variant-2KB, reference, missense
rs1065065 -- 65,120,778(-) GAAGA(A/C)GACAG upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MRPL49 Gene

Variant ID Type Subtype PubMed ID
nsv526181 CNV gain 19592680

Variation tolerance for MRPL49 Gene

Residual Variation Intolerance Score: 64.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.38; 27.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPL49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPL49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPL49 Gene

Disorders for MRPL49 Gene

MalaCards: The human disease database

(3) MalaCards diseases for MRPL49 Gene - From: DISEASES

Disorder Aliases PubMed IDs
neonatal myasthenia gravis
  • myasthenia gravis, neonatal
glossopharyngeal neuralgia
  • glossovasopharyngeal neuralgia
glossopharyngeal nerve disease
  • glossopharyngeal nerve diseases
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for MRPL49

Genetic Association Database (GAD)
MRPL49
Human Genome Epidemiology (HuGE) Navigator
MRPL49
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPL49
genes like me logo Genes that share disorders with MRPL49: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MRPL49 Gene

Publications for MRPL49 Gene

  1. Isolation, cDNA, and genomic structure of a conserved gene (NOF) at chromosome 11q13 next to FAU and oriented in the opposite transcriptional orientation. (PMID: 8786148) Kas K. … Merregaert J. (Genomics 1996) 2 3 4 22 64
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. (PMID: 11551941) Koc E.C. … Spremulli L.L. (J. Biol. Chem. 2001) 3 4 64

Products for MRPL49 Gene

Sources for MRPL49 Gene

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