Free for academic non-profit institutions. Other users need a Commercial license

MRPL42P5 Gene(Pseudogene)

Mitochondrial Ribosomal Protein L42 Pseudogene 5

GCID:
GC15M040531
GIFtS:
13
Genes Participants
UDN Logo

Aliases for MRPL42P5 Gene

Aliases for MRPL42P5 Gene

  • Mitochondrial Ribosomal Protein L42 Pseudogene 5 2 3

External Ids for MRPL42P5 Gene

Previous GeneCards Identifiers for MRPL42P5 Gene

  • GC15U900020
  • GC15M038612
  • GC15M038613
  • GC15M040824

Summaries for MRPL42P5 Gene

GeneCards Summary for MRPL42P5 Gene

MRPL42P5 (Mitochondrial Ribosomal Protein L42 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL42P5 Gene

Genomics for MRPL42P5 Gene

Products:

  1. Regulatory Element

Regulatory Elements for MRPL42P5 Gene

Enhancers for MRPL42P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G040536 0.7 ENCODE 0.7 -4.3 -4281 1.1 CTCF PKNOX1 NR4A1 USF2 MAFG ZIC2 RAD21 MAFF RAD51 ZNF316 C15orf57 PIR54978 MRPL42P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPL42P5 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the MRPL42P5 gene promoter:

Genomic Location for MRPL42P5 Gene

Chromosome:
15
Start:
40,531,884 bp from pter
End:
40,532,550 bp from pter
Size:
667 bases
Orientation:
Minus strand

Genomic View for MRPL42P5 Gene

Genes around MRPL42P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPL42P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPL42P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MRPL42P5 Gene

Proteins for MRPL42P5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MRPL42P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MRPL42P5 Gene

Domains & Families for MRPL42P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MRPL42P5 Gene

Function for MRPL42P5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MRPL42P5 Gene

Localization for MRPL42P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MRPL42P5 Gene

Pathways & Interactions for MRPL42P5 Gene

SuperPathways for MRPL42P5 Gene

PathCards logo More details on SuperPathways for MRPL42P5
No Data Available

Interacting Proteins for MRPL42P5 Gene

Gene Ontology (GO) - Biological Process for MRPL42P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MRPL42P5 Gene

Drugs & Compounds for MRPL42P5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MRPL42P5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MRPL42P5 Gene

(1) Additional mRNA sequences :

Unigene Clusters for MRPL42P5 Gene

Mitochondrial ribosomal protein L42 pseudogene 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL42P5 Gene

No ASD Table

Relevant External Links for MRPL42P5 Gene

GeneLoc Exon Structure for
MRPL42P5
ECgene alternative splicing isoforms for
MRPL42P5

Expression for MRPL42P5 Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of MRPL42P5 Gene:

MRPL42P5

SOURCE GeneReport for Unigene cluster for MRPL42P5 Gene:

Hs.678598
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPL42P5 Gene

Orthologs for MRPL42P5 Gene

No data available for Orthologs and Evolution for MRPL42P5 Gene

Paralogs for MRPL42P5 Gene

No data available for Paralogs for MRPL42P5 Gene

Variants for MRPL42P5 Gene

Sequence variations from dbSNP and Humsavar for MRPL42P5 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000318213 -- 40,534,063(+) AAAAT(A/T)TTAAT intron-variant, upstream-variant-2KB
rs1000647664 -- 40,533,781(+) AGGAG(G/T)AGGGA intron-variant, upstream-variant-2KB
rs1003094792 -- 40,531,663(+) AGGCT(A/G)GAATG downstream-variant-500B, utr-variant-3-prime
rs1005289532 -- 40,531,946(+) CCAAT(G/T)GCAAA nc-transcript-variant, utr-variant-3-prime
rs1008904883 -- 40,534,496(+) CCCCT(C/T)CTAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MRPL42P5 Gene

Variant ID Type Subtype PubMed ID
esv34145 CNV loss 18971310
nsv832984 CNV loss 17160897

Relevant External Links for MRPL42P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPL42P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MRPL42P5 Gene

Disorders for MRPL42P5 Gene

Relevant External Links for MRPL42P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPL42P5

No disorders were found for MRPL42P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPL42P5 Gene

Publications for MRPL42P5 Gene

  1. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. (PMID: 12706105) Zhang Z. … Gerstein M. (Genomics 2003) 2 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MRPL42P5 Gene

Sources for MRPL42P5 Gene

Content
Loading form....