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MRPL36 Gene

protein-coding   GIFtS: 46
GCID: GC05M001851

Mitochondrial Ribosomal Protein L36

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Mitochondrial Ribosomal Protein L361 2     39S Ribosomal Protein L361
Putative BRCA1-Interacting Protein1 2     mitochondrial1
BRIP12 3     39S Ribosomal Protein L36, Mitochondrial2
L36mt2 3     PRPL362
MRP-L362 3     RPMJ2
BRCA1-Interacting Protein 12 3     

External Ids:    HGNC: 144901   Entrez Gene: 649792   Ensembl: ENSG000001714217   OMIM: 6118425   UniProtKB: Q9P0J63   

Export aliases for MRPL36 gene to outside databases

Previous GC identifers: GC05M001939 GC05M001831


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MRPL36 Gene:
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the
mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit.
They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is
reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain
a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and
sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a
39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 2p. (provided by RefSeq, Jul
2008)

GeneCards Summary for MRPL36 Gene:
MRPL36 (mitochondrial ribosomal protein L36) is a protein-coding gene. Diseases associated with MRPL36 include genital herpes, and wolf-hirschhorn syndrome. GO annotations related to this gene include structural constituent of ribosome.

UniProtKB/Swiss-Prot: RM36_HUMAN, Q9P0J6
Function: Component of the large subunit of the mitochondrial ribosome (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MRPL36 gene promoter:
         ER-alpha   RFX1   Pax-2   MIF-1   Pax-2a   PPAR-gamma1   c-Myb   Msx-1   ZIC2/Zic2   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMRPL36 promoter sequence
   Search Chromatin IP Primers for MRPL36

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MRPL36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5p15.3   Ensembl cytogenetic band:  5p15.33   HGNC cytogenetic band: 5p15.3

MRPL36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MRPL36 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M001851:  view genomic region     (about GC identifiers)

Start:
1,798,499 bp from pter      End:
1,801,480 bp from pter
Size:
2,982 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: RM36_HUMAN, Q9P0J6 (See protein sequence)
Recommended Name: 39S ribosomal protein L36, mitochondrial precursor  
Size: 103 amino acids; 11784 Da
Sequence caution: Sequence=AAF04788.1; Type=Erroneous initiation;
Secondary accessions: A4UCS0 B2R4Z2 Q3SWV6 Q9UKL7

Explore the universe of human proteins at neXtProt for MRPL36: NX_Q9P0J6

Explore proteomics data for MRPL36 at MOPED


See MRPL36 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_115868.1  
ENSEMBL proteins: 
 ENSP00000423152   ENSP00000427152   ENSP00000423399   ENSP00000372093   ENSP00000424366  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MRPL: Mitochondrial ribosomal proteins / large subunits

1 InterPro protein domain:
 IPR000473 Ribosomal_L36

Graphical View of Domain Structure for InterPro Entry Q9P0J6

ProtoNet protein and cluster: Q9P0J6

1 Blocks protein domain: IPB000473 Ribosomal protein L36

UniProtKB/Swiss-Prot: RM36_HUMAN, Q9P0J6
Similarity: Belongs to the ribosomal protein L36P family


MRPL36 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: RM36_HUMAN, Q9P0J6
Function: Component of the large subunit of the mitochondrial ribosome (Potential)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003735structural constituent of ribosome IEA--
     
MRPL36 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
RM36_HUMAN, Q9P0J6: Mitochondrion
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
mitochondrion5
cytosol1
extracellular1
nucleus1
plasma membrane1

Gene Ontology (GO): 4 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----
GO:0005739mitochondrion ----
GO:0005762mitochondrial large ribosomal subunit NAS11279069
GO:0005840ribosome ----

MRPL36 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MRPL36 About                                                                                                See pathways by source

SuperPathContained pathways About
1CFTR translational fidelity class I mutations
Ribosome0.54

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways




1 Kegg Pathway  (Kegg details for MRPL36):
    Ribosome


MRPL36 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MRPL36
Interactions:

    Search GeneGlobe Interaction Network for MRPL36

STRING Interaction Network Preview (showing 5 interactants - click image to see 24)

Selected Interacting proteins for MRPL36 (Q9P0J63 ENSP000003720934) via UniProtKB, MINT, STRING, and/or I2D (see all 24)
InteractantInteraction Details
GeneCardExternal ID(s)
BRCA1P383983, ENSP000003502834I2D: score=1 STRING: ENSP00000350283
RRASP103013, ENSP000002467924I2D: score=2 STRING: ENSP00000246792
MRPL3ENSP000002649954STRING: ENSP00000264995
RHOT1ENSP000003511324STRING: ENSP00000351132
RHOT2ENSP000003219714STRING: ENSP00000321971
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Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006412translation NAS11279069

MRPL36 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MRPL36 (RM36)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for MRPL36 gene: 
NM_032479.3  

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000505059(uc003jcx.4) ENST00000505818 ENST00000508987 ENST00000382647
ENST00000510999
miRNA
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Primer
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  QuantiFast Probe-based Assays in human, mouse, rat MRPL36

Selected AceView cDNA sequences (see all 166):

AA349759 BC020642 BQ012845 AI571297 H93719 AA913056 AA954613 AB049654 
BX111462 AA904619 AA503830 BQ671162 AA443024 BG027687 AW187987 AA977298 
AI052480 AA454963 BQ012351 H79084 AA737421 AI598208 H77596 AW572997 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for MRPL36    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b
SP1:                              
SP2:              -               


ECgene alternative splicing isoforms for MRPL36

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MRPL36 expression in normal human tissues (normalized intensities)      MRPL36 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCAAATCTTT
MRPL36 Expression
About this image


MRPL36 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 3) fully expand
 
 Adipose (Muscoskeletal System)
         Body Subcutaneous White Adipose
 
 Testis (Reproductive System)
 
 Adrenal Gland (Endocrine System)
MRPL36 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MRPL36 Protein Expression
    Custom PCR Arrays for MRPL36
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MRPL36

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MRPL36 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mrpl361 , 5 mitochondrial ribosomal protein L361, 5 69.73(n)1
62.24(a)1
  13 (39.71 cM)5
940661  NM_053163.11  NP_444393.11 
 733310095 
lizard
(Anolis carolinensis)
Reptilia MRPL366
mitochondrial ribosomal protein L36
75(a)
1 ↔ 1
4(68480488-68589301)
zebrafish
(Danio rerio)
Actinopterygii mrpl366
mitochondrial ribosomal protein L36
33(a)
1 ↔ 1
19(28769785-28775878) ENSDARG00000070607


ENSEMBL Gene Tree for MRPL36 (if available)
TreeFam Gene Tree for MRPL36 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MRPL36 (see all 75)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs42779511,2
C,F,A,H--1798022(+) CTAGGG/TACTGA 1 -- ds50019Minor allele frequency- T:0.20NS EA NA WA 780
rs1146779121,2
F--1798036(+) AGTGCG/AGTAGA 1 -- ds50011Minor allele frequency- A:0.03WA 118
rs1458208041,2
C--1798049(+) TGACAC/TGCTGG 1 -- ds50010--------
rs1384586921,2
--1798106(+) TCTCTC/TGGGAC 1 -- ds50010--------
rs1165767871,2
F--1798111(+) CGGGAC/GACTCT 1 -- ds50011Minor allele frequency- G:0.03WA 118
rs1881247381,2
C--1798117(+) ACTCTC/TGGGAA 1 -- ds50010--------
rs45886291,2
C,F,H--1798138(+) GGGCAG/ATGCAA 1 -- ds500122Minor allele frequency- A:0.21NS EA NA WA CSA 2755
rs42750101,2
C,F,H--1798203(+) AGACCC/TCAGAC 1 -- ds50018Minor allele frequency- T:0.17NS EA WA CSA NA 649
rs100850111,2
C,F,A,H--1798243(+) TCCTGC/Tagtta 1 -- ds500123Minor allele frequency- T:0.13NS EA NA WA 2532
rs593881491,2
F--1798262(+) CAGATC/AAGACA 1 -- ds50011Minor allele frequency- A:0.08WA 118

HapMap Linkage Disequilibrium report for MRPL36 (1798499 - 1801480 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MRPL36: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MRPL36
DNA2.0 Custom Variant and Variant Library Synthesis for MRPL36

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611842    OMIM disorders: --

2 diseases for MRPL36:    About MalaCards
genital herpes    wolf-hirschhorn syndrome


MRPL36 for disorders           About GeneDecksing

Genetic Association Database (GAD): MRPL36
Human Genome Epidemiology (HuGE) Navigator: MRPL36 (1 document)

Export disorders for MRPL36 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MRPL36 gene, integrated from 10 sources (see all 15):
(articles sorted by number of sources associating them with MRPL36)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PubMed id 20877624)1, 4 Hendrickson S.L....O'Brien S.J. (PLoS ONE 2010)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. (PubMed id 11279069)1, 2 Suzuki T....Watanabe K. (J. Biol. Chem. 2001)
  4. The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PubMed id 11543634)1, 3 Kenmochi N.... Tanaka T. (Genomics 2001)
  5. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PubMed id 10931946)1, 2 Hu R.-M.... Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000)
  6. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  7. Global identification of modular cullin-RING ligase substrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (Cell 2011)
  8. Association of LETM1 and MRPL36 contributes to the regulation of mitochondrial ATP production and necrotic cell death. (PubMed id 19318571)1 Piao L....Park J. (Cancer Res. 2009)
  9. Protein interaction data set highlighted with human Ras-MAPK/PI3K signaling pathways. (PubMed id 18624398)1 Wang J....He F. (J. Proteome Res. 2008)
  10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 64979 HGNC: 14490 AceView: MRPL36 Ensembl:ENSG00000171421 euGenes: HUgn64979
ECgene: MRPL36 Kegg: 64979 H-InvDB: MRPL36

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MRPL36 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MRPL36 gene:
Search GeneIP for patents involving MRPL36

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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