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MRPL33 Gene

protein-coding   GIFtS: 46
GCID: GC02P027994

Mitochondrial Ribosomal Protein L33


(Previous symbol: C2orf1)
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disease database 

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Mitochondrial Ribosomal Protein L331 2
C2orf11 2 3
L33mt2 3
MRP-L332 3
39S Ribosomal Protein L33, Mitochondrial2
RPL33L2

External Ids:    HGNC: 144871   Entrez Gene: 95532   Ensembl: ENSG000002431477   OMIM: 6100595   UniProtKB: O753943   

Export aliases for MRPL33 gene to outside databases

Previous GC identifers: GC02P027915 GC02P028087 GC02P027969 GC02P027906 GC02P027735


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MRPL33 Gene:
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the
mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit.
They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is
reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain
a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and
sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a
39S subunit protein. Alternatively spliced transcript variants encoding different isoforms have been described.
(provided by RefSeq, Jul 2008)

GeneCards Summary for MRPL33 Gene:
MRPL33 (mitochondrial ribosomal protein L33) is a protein-coding gene. GO annotations related to this gene include structural constituent of ribosome.

Gene Wiki entry for MRPL33 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NC_018913.2  NT_022184.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the MRPL33 gene promoter:
         AML1a   LCR-F1   NF-kappaB   AREB6   PPAR-gamma1   SEF-1 (1)   PPAR-gamma2   Pax-4a   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMRPL33 promoter sequence
   Search Chromatin IP Primers for MRPL33

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MRPL33


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p21   Ensembl cytogenetic band:  2p23.2   HGNC cytogenetic band: 2p21

MRPL33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MRPL33 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P027994:  view genomic region     (about GC identifiers)

Start:
27,994,584 bp from pter      End:
28,210,954 bp from pter
Size:
216,371 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: RM33_HUMAN, O75394 (See protein sequence)
Recommended Name: 39S ribosomal protein L33, mitochondrial  
Size: 65 amino acids; 7619 Da
1 PDB 3D structure from and Proteopedia for MRPL33:
3IY9 (3D)    
Secondary accessions: Q53RZ6 Q5FVE3 Q96Q50
Alternative splicing: 2 isoforms:  O75394-1   O75394-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for MRPL33: NX_O75394

Explore proteomics data for MRPL33 at MOPED


See MRPL33 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_004882.1  NP_663303.1  

ENSEMBL proteins: 
 ENSP00000368988   ENSP00000296102   ENSP00000407385  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MRPL: Mitochondrial ribosomal proteins / large subunits

2 InterPro protein domains:
 IPR011332 Ribosomal_zn-bd
 IPR001705 Ribosomal_L33

Graphical View of Domain Structure for InterPro Entry O75394

ProtoNet protein and cluster: O75394

1 Blocks protein domain: IPB001705 Ribosomal protein L33

UniProtKB/Swiss-Prot: RM33_HUMAN, O75394
Similarity: Belongs to the ribosomal protein L33P family


Find genes that share domains with MRPL33           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003735structural constituent of ribosome IEA--
     
Find genes that share ontologies with MRPL33           About GenesLikeMe


Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for MRPL33

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hsa-miR-877* hsa-miR-577
SwitchGear 3'UTR luciferase reporter plasmidMRPL33 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
RM33_HUMAN, O75394: Mitochondrion
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
mitochondrion5
nucleus2
cytosol1

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----
GO:0005739mitochondrion IEA--
GO:0005840ribosome IEA--

Find genes that share ontologies with MRPL33           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MRPL33 About    
See pathways by source

SuperPathContained pathways About
1CFTR translational fidelity class I mutations
Ribosome0.54


Find genes that share SuperPaths with MRPL33           About GenesLikeMe

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1 Kegg Pathway  (Kegg details for MRPL33):
    Ribosome

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MRPL33
Interactions:

    Search GeneGlobe Interaction Network for MRPL33

STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

Selected Interacting proteins for MRPL33 (ENSP000002961024) via UniProtKB, MINT, STRING, and/or I2D (see all 16)
InteractantInteraction Details
GeneCardExternal ID(s)
MRPL11ENSP000003088974STRING: ENSP00000308897
MRPL16ENSP000003001514STRING: ENSP00000300151
MRPL17ENSP000002889374STRING: ENSP00000288937
MRPL22ENSP000004111774STRING: ENSP00000411177
MRPL24ENSP000003545254STRING: ENSP00000354525
About this table

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006412translation IEA--

Find genes that share ontologies with MRPL33           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MRPL33 (RM33)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MRPL33 gene (2 alternative transcripts): 
NM_004891.3  NM_145330.2  

Unigene Cluster for MRPL33:

Mitochondrial ribosomal protein L33
Hs.515879  [show with all ESTs]
Unigene Representative Sequence: AK094440
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000379666 ENST00000296102(uc002rlm.1 uc002rln.1) ENST00000448427
ENST00000472192 ENST00000483992 ENST00000476552
miRNA
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2 qRT-PCR Assays for microRNAs that regulate MRPL33:
hsa-miR-877* hsa-miR-577
SwitchGear 3'UTR luciferase reporter plasmidMRPL33 3' UTR sequence
Inhib. RNA
Products:
     
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Predesigned siRNA for gene silencing in human, mouse, rat MRPL33
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Primer
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OriGene qPCR primer pairs and template standards for MRPL33
Pre-validated RT2 qPCR Primer Assay in human, mouse, rat MRPL33
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  QuantiFast Probe-based Assays in human, mouse, rat MRPL33

Additional mRNA sequence: 

AF047440.1 AK094440.1 BC009475.1 BC020834.1 BC087846.1 BC090047.1 CR456888.1 CR542117.1 

13 DOTS entries:

DT.117592  DT.92427906  DT.99942653  DT.92427905  DT.92427903  DT.121024167  DT.100036066  DT.92015093 
DT.92427912  DT.95260337  DT.100723302  DT.92427911  DT.95146574 

Selected AceView cDNA sequences (see all 180):

CD672913 BQ185572 AI597616 AA894720 AA318851 BQ189400 AA927352 BQ187518 
D52954 AA594514 T31368 AA947003 BF516222 BM769764 CK299534 BM739502 
AA406051 AV649394 AA372016 AK094440 AA258212 BM126407 AI190424 AA826454 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MRPL33 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAATCACTGC
MRPL33 Expression
About this image


MRPL33 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Blood (Hematopoietic System)
         Monocytes Peripheral Blood
MRPL33 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MRPL33 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.515879
    Custom PCR Arrays for MRPL33
Primer
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Pre-validated RT2 qPCR Primer Assay in human, mouse, rat MRPL33
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MRPL33

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MRPL33 gene from Selected species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mrpl331 , 5 mitochondrial ribosomal protein L331, 5 82.05(n)1
76.92(a)1
  5 (17.27 cM)5
668451  NM_025796.31  NP_080072.21 
 315969355 
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii BX084669.12   -- 79.69(n)    BX084669.1 


ENSEMBL Gene Tree for MRPL33 (if available)
TreeFam Gene Tree for MRPL33 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MRPL33 (see all 197)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1162046451,2
C,F--27992748(+) CTGGAT/ACCTGA 2 -- us2k11Minor allele frequency- A:0.01WA 118
rs799520721,2
--27992792(+) TTTTTG/TCTATT 2 -- us2k11Minor allele frequency- T:0.50NA 2
rs1835052761,2
--27992835(+) CTCACC/TTCAGA 2 -- us2k10--------
rs1883962171,2
--27992962(+) GACAGA/GGTTTT 2 -- us2k10--------
rs743890811,2
C,F--27993142(+) TAAAGT/GGACTT 2 -- us2k11Minor allele frequency- G:0.04NA 120
rs1475382111,2
--27993274(+) TGCCAA/GTGCAA 2 -- us2k10--------
rs1928416191,2
--27993414(+) AAAAAA/GTTGAA 2 -- us2k10--------
rs1419552281,2
--27993657(+) TTGGCC/TAGGCT 2 -- us2k10--------
rs1506582061,2
C--27993704(+) TCAGCC/TTCCCA 2 -- us2k10--------
rs1842886901,2
--27993743(+) GCGATG/TAAATC 2 -- us2k10--------

HapMap Linkage Disequilibrium report for MRPL33 (27994584 - 28210954 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MRPL33: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MRPL33
DNA2.0 Custom Variant and Variant Library Synthesis for MRPL33

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610059    OMIM disorders: --


Find genes that share disorders with MRPL33           About GenesLikeMe

Genetic Association Database (GAD): MRPL33
Human Genome Epidemiology (HuGE) Navigator: MRPL33 (1 document)

Export disorders for MRPL33 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MRPL33 gene, integrated from 10 sources (see all 12):
(articles sorted by number of sources associating them with MRPL33)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PubMed id 20877624)1, 4 Hendrickson S.L....O'Brien S.J. (PLoS ONE 2010)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PubMed id 11543634)1, 2 Kenmochi N.... Tanaka T. (Genomics 2001)
  5. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full- length cDNA cloning. (PubMed id 9653160)1, 2 Mao M.... Chen Z. (Proc. Natl. Acad. Sci. U.S.A. 1998)
  6. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
  7. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. (PubMed id 22581228)1 Manning A.K....Langenberg C. (Nat. Genet. 2012)
  8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
  9. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. (PubMed id 12706105)1 Zhang Z. and Gerstein M. (Genomics 2003)
  10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 9553 HGNC: 14487 AceView: MRPL33 Ensembl:ENSG00000243147 euGenes: HUgn9553
ECgene: MRPL33 Kegg: 9553 H-InvDB: MRPL33

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MRPL33 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MRPL33 gene:
Search GeneIP for patents involving MRPL33

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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 antibodies-online proteins for MRPL33 (7 products)
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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