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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MRPL33 Gene

protein-coding   GIFtS: 44
GCID: GC02P027994

Mitochondrial Ribosomal Protein L33


(Previous symbol: C2orf1)
  Search for MRPL33
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Mitochondrial Ribosomal Protein L331 2
C2orf11 2 3
L33mt2 3
MRP-L332 3
39S Ribosomal Protein L33, Mitochondrial2
RPL33L2

External Ids:    HGNC: 144871   Entrez Gene: 95532   Ensembl: ENSG000002431477   OMIM: 6100595   UniProtKB: O753943   

Export aliases for MRPL33 gene to outside databases

Previous GC identifers: GC02P027915 GC02P028087 GC02P027969 GC02P027906 GC02P027735


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MRPL33 Gene:
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the
mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit.
They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is
reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain
a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and
sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a
39S subunit protein. Alternatively spliced transcript variants encoding different isoforms have been described.
(provided by RefSeq, Jul 2008)

GeneCards Summary for MRPL33 Gene: 
MRPL33 (mitochondrial ribosomal protein L33) is a protein-coding gene. Among its related super-pathways are Viral mRNA Translation. GO annotations related to this gene include structural constituent of ribosome.

Gene Wiki entry for MRPL33 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.2  NT_022184.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MRPL33 gene promoter:
         AML1a   LCR-F1   NF-kappaB   AREB6   PPAR-gamma1   SEF-1 (1)   PPAR-gamma2   Pax-4a   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMRPL33 promoter sequence
   Search SABiosciences Chromatin IP Primers for MRPL33

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MRPL33


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p21   Ensembl cytogenetic band:  2p23.2   HGNC cytogenetic band: 2p21

MRPL33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MRPL33 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P027994:  view genomic region     (about GC identifiers)

Start:
27,994,584 bp from pter      End:
28,210,954 bp from pter
Size:
216,371 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: RM33_HUMAN, O75394 (See protein sequence)
Recommended Name: 39S ribosomal protein L33, mitochondrial  
Size: 65 amino acids; 7619 Da
Subcellular location: Mitochondrion
Secondary accessions: Q53RZ6 Q5FVE3 Q96Q50
Alternative splicing: 2 isoforms:  O75394-1   O75394-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for MRPL33: NX_O75394

Explore proteomics data for MRPL33 at MOPED 

MRPL33 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

MRPL33 Protein Expression

REFSEQ proteins (2 alternative transcripts): 
NP_004882.1  NP_663303.1  

ENSEMBL proteins: 
 ENSP00000368988   ENSP00000296102   ENSP00000407385  

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----
GO:0005739mitochondrion IEA--
GO:0005840ribosome IEA--

MRPL33 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
MRPL: Mitochondrial ribosomal proteins / large subunits

2 InterPro protein domains:
 IPR011332 Ribosomal_zn-bd_dom
 IPR001705 Ribosomal_L33

Graphical View of Domain Structure for InterPro Entry O75394

ProtoNet protein and cluster: O75394

1 Blocks protein domain: IPB001705 Ribosomal protein L33

UniProtKB/Swiss-Prot: RM33_HUMAN, O75394
Similarity: Belongs to the ribosomal protein L33P family


MRPL33 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003735structural constituent of ribosome IEA--
     
MRPL33 for ontologies           About GeneDecksing


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Inhib. RNA
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for MRPL33 About                                                                                                See pathways by source

SuperPathContained pathways About
1Viral mRNA Translation
Ribosome0.59

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways



1         Kegg Pathway  (Kegg details for MRPL33):
    Ribosome


MRPL33 for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MRPL33

STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

5/8 Interacting proteins for MRPL33 (ENSP000002961024) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
InteractantInteraction Details
GeneCardExternal ID(s)
MRPL11ENSP000003088974STRING: ENSP00000308897
MRPL16ENSP000003001514STRING: ENSP00000300151
MRPL17ENSP000002889374STRING: ENSP00000288937
MRPL22ENSP000004111774STRING: ENSP00000411177
MRPL24ENSP000003545254STRING: ENSP00000354525
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006412translation IEA--

MRPL33 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MRPL33 (RM33)

Search CenterWatch for drugs/clinical trials and news about MRPL33 / RM33

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for MRPL33 gene (2 alternative transcripts): 
NM_004891.3  NM_145330.2  

Unigene Cluster for MRPL33:

Mitochondrial ribosomal protein L33
Hs.515879  [show with all ESTs]
Unigene Representative Sequence: AK094440
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000379666 ENST00000296102(uc002rlm.1 uc002rln.1) ENST00000448427
ENST00000472192 ENST00000483992 ENST00000476552
miRNA
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2 QIAGEN miScript miRNA Assays for microRNAs that regulate MRPL33:
hsa-miR-877* hsa-miR-577
SwitchGear 3'UTR luciferase reporter plasmidMRPL33 3' UTR sequence
Inhib. RNA
Products:
     
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                     Customized lentivirus expression plasmids for stable overexpression of MRPL33 
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Additional mRNA sequence: 

AF047440.1 AK094440.1 BC009475.1 BC020834.1 BC087846.1 BC090047.1 CR456888.1 CR542117.1 

13 DOTS entries:

DT.117592  DT.92427906  DT.99942653  DT.92427905  DT.92427903  DT.121024167  DT.100036066  DT.92015093 
DT.92427912  DT.95260337  DT.100723302  DT.92427911  DT.95146574 

24/180 AceView cDNA sequences (see all 180):

AA631119 BM739502 BQ187518 AK094440 AA258212 AI312130 BM769764 AA947003 
CR542117 CB143609 F36024 AI302407 AA406051 CD672913 CR456888 T31368 
AA894720 AV647991 AA594514 AA318851 AI370811 AW963405 AI190424 R16102 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

MRPL33 expression in normal human tissues (normalized intensities)      MRPL33 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAATCACTGC
MRPL33 Expression
About this image


MRPL33 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/1 selected tissues (see all 1) fully expand
 
 Blood (Hematopoietic System)
         Monocytes Peripheral Blood

See MRPL33 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MRPL33

SOURCE GeneReport for Unigene cluster: Hs.515879
    SABiosciences Custom PCR Arrays for MRPL33
Primer
Products:
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MRPL33

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for MRPL33 gene from 2/8 species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mrpl331 , 5 mitochondrial ribosomal protein L331, 5 82.05(n)1
76.92(a)1
  5 (17.27 cM)5
668451  NM_025796.31  NP_080072.21 
 315969355 
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii BX084669.12   -- 79.69(n)    BX084669.1 


ENSEMBL Gene Tree for MRPL33 (if available)
TreeFam Gene Tree for MRPL33 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/197 SNPs in MRPL33 are shown (see all 197)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1162046451,2
C,F--27992748(+) CTGGAT/ACCTGA 2 -- us2k11Minor allele frequency- A:0.01WA 118
rs799520721,2
--27992792(+) TTTTTG/TCTATT 2 -- us2k11Minor allele frequency- T:0.50NA 2
rs1835052761,2
--27992835(+) CTCACC/TTCAGA 2 -- us2k10--------
rs1883962171,2
--27992962(+) GACAGA/GGTTTT 2 -- us2k10--------
rs743890811,2
C,F--27993142(+) TAAAGT/GGACTT 2 -- us2k11Minor allele frequency- G:0.04NA 120
rs1475382111,2
--27993274(+) TGCCAA/GTGCAA 2 -- us2k10--------
rs1928416191,2
--27993414(+) AAAAAA/GTTGAA 2 -- us2k10--------
rs1419552281,2
--27993657(+) TTGGCC/TAGGCT 2 -- us2k10--------
rs1506582061,2
C--27993704(+) TCAGCC/TTCCCA 2 -- us2k10--------
rs1842886901,2
--27993743(+) GCGATG/TAAATC 2 -- us2k10--------

HapMap Linkage Disequilibrium report for MRPL33 (27994584 - 28210954 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MRPL33: --
SABiosciences Cancer Mutation PCR Assays
SeqTarget long-range PCR primers for resequencing MRPL33
DNA2.0 Custom Variant and Variant Library Synthesis for MRPL33

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

MRPL33 for disorders           About MalaCards
OMIM gene information: 610059    OMIM disorders: --


MRPL33 for disorders           About GeneDecksing

Genetic Association Database (GAD): MRPL33
Human Genome Epidemiology (HuGE) Navigator: MRPL33 (1 document)

Export disorders for MRPL33 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for MRPL33 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with MRPL33)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624)1, 4 Hendrickson S.L....O'Brien S.J. (2010)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  4. The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PubMed id 11543634)1, 2 Kenmochi N....Tanaka T. (2001)
  5. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full- length cDNA cloning. (PubMed id 9653160)1, 2 Mao M.... Chen Z. (1998)
  6. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
  7. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resi stance. (PubMed id 22581228)1 Manning A.K....Langenberg C. (2012)
  8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
  9. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. (PubMed id 12706105)1 Zhang Z. and Gerstein M. (2003)
  10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 9553 HGNC: 14487 AceView: MRPL33 Ensembl:ENSG00000243147 euGenes: HUgn9553
ECgene: MRPL33 Kegg: 9553 H-InvDB: MRPL33

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for MRPL33 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for MRPL33 gene:
Search GeneIP for patents involving MRPL33

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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