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Aliases for MRPL13 Gene

Aliases for MRPL13 Gene

  • Mitochondrial Ribosomal Protein L13 2 3 5
  • Mitochondrial Large Ribosomal Subunit Protein UL13m 3 4
  • MRP-L13 3 4
  • L13mt 3 4
  • 39S Ribosomal Protein L13, Mitochondrial 3
  • RPML13 3
  • RPL13 3
  • L13A 3
  • L13 3

External Ids for MRPL13 Gene

Previous GeneCards Identifiers for MRPL13 Gene

  • GC08M121466
  • GC08M121076
  • GC08M121364
  • GC08M121477
  • GC08M116728
  • GC08M121393

Summaries for MRPL13 Gene

Entrez Gene Summary for MRPL13 Gene

  • Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRPL13 Gene

MRPL13 (Mitochondrial Ribosomal Protein L13) is a Protein Coding gene. Among its related pathways are Mitochondrial translation and Organelle biogenesis and maintenance. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Additional gene information for MRPL13 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRPL13 Gene

Genomics for MRPL13 Gene

Regulatory Elements for MRPL13 Gene

Enhancers for MRPL13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H120932 1 Ensembl ENCODE 10.2 -487.9 -487929 2 ELF3 TFAP4 ZNF792 SAP130 MLX CEBPG ZNF644 ZNF7 TEAD3 HOMEZ MRPL13 MTBP SNTB1 HAS2-AS1 ENSG00000253619 LOC100133147
GH08H120951 0.8 ENCODE 10.7 -506.0 -505969 0 CTCF FOXA2 CEBPG RAD21 ZKSCAN1 RFX5 CTBP1 GATA3 FOXK2 SCRT2 MRPL13 MTBP ENSG00000253619 LOC100133147
GH08H120529 0.7 Ensembl ENCODE 10.4 -84.7 -84679 1 PAF1 SSRP1 POLR2A MTBP MRPL13 NCAPGP1
GH08H120597 0.6 ENCODE 10.9 -152.8 -152838 1 ZNF316 JUND ARID3A MAFG FOS MAFK MRPL13 MTBP NCAPGP1
GH08H119862 0.6 Ensembl 10 +582.4 582406 0 CTCF ZNF654 ZNF384 RAD21 ZSCAN21 ZNF143 SMC3 FOS PRDM1 DSCC1 TAF2 COL14A1 MRPL13 MTBP DEPTOR RN7SL396P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRPL13 on UCSC Golden Path with GeneCards custom track

Promoters for MRPL13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000229544 307 2201 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for MRPL13 Gene

Chromosome:
8
Start:
120,380,761 bp from pter
End:
120,445,407 bp from pter
Size:
64,647 bases
Orientation:
Minus strand

Genomic View for MRPL13 Gene

Genes around MRPL13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRPL13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRPL13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRPL13 Gene

Proteins for MRPL13 Gene

  • Protein details for MRPL13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYD1-RM13_HUMAN
    Recommended name:
    39S ribosomal protein L13, mitochondrial
    Protein Accession:
    Q9BYD1
    Secondary Accessions:
    • B2R4R8
    • Q9UI04

    Protein attributes for MRPL13 Gene

    Size:
    178 amino acids
    Molecular mass:
    20692 Da
    Quaternary structure:
    • Component of the mitochondrial large ribosomal subunit (mt-LSU). Mature mammalian 55S mitochondrial ribosomes consist of a small (28S) and a large (39S) subunit. The 28S small subunit contains a 12S ribosomal RNA (12S mt-rRNA) and 30 different proteins. The 39S large subunit contains a 16S rRNA (16S mt-rRNA), a copy of mitochondrial valine transfer RNA (mt-tRNA(Val)), which plays an integral structural role, and 52 different proteins (PubMed:25278503, PubMed:25838379). Interacts with OXA1L (By similarity).
    SequenceCaution:
    • Sequence=AAF17202.1; Type=Frameshift; Positions=160; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for MRPL13 Gene

neXtProt entry for MRPL13 Gene

Post-translational modifications for MRPL13 Gene

  • Ubiquitination at Lys114
  • Modification sites at PhosphoSitePlus

Other Protein References for MRPL13 Gene

No data available for DME Specific Peptides for MRPL13 Gene

Domains & Families for MRPL13 Gene

Gene Families for MRPL13 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Ribosomal proteins

Protein Domains for MRPL13 Gene

Suggested Antigen Peptide Sequences for MRPL13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYD1

UniProtKB/Swiss-Prot:

RM13_HUMAN :
  • Belongs to the universal ribosomal protein uL13 family.
Family:
  • Belongs to the universal ribosomal protein uL13 family.
genes like me logo Genes that share domains with MRPL13: view

Function for MRPL13 Gene

Phenotypes From GWAS Catalog for MRPL13 Gene

Gene Ontology (GO) - Molecular Function for MRPL13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
GO:0003729 mRNA binding IBA --
GO:0003735 structural constituent of ribosome NAS,IEA 11279069
GO:0005515 protein binding IPI 20601428
genes like me logo Genes that share ontologies with MRPL13: view
genes like me logo Genes that share phenotypes with MRPL13: view

Animal Model Products

CRISPR Products

miRNA for MRPL13 Gene

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MRPL13
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRPL13 Gene

Localization for MRPL13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRPL13 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRPL13 gene
Compartment Confidence
mitochondrion 5
nucleus 3

Gene Ontology (GO) - Cellular Components for MRPL13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane TAS --
GO:0005761 mitochondrial ribosome IEA,IDA 20601428
GO:0005762 mitochondrial large ribosomal subunit NAS 11279069
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with MRPL13: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for MRPL13 Gene

Pathways & Interactions for MRPL13 Gene

genes like me logo Genes that share pathways with MRPL13: view

Gene Ontology (GO) - Biological Process for MRPL13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA,NAS 11279069
GO:0070125 mitochondrial translational elongation TAS --
GO:0070126 mitochondrial translational termination TAS --
genes like me logo Genes that share ontologies with MRPL13: view

No data available for SIGNOR curated interactions for MRPL13 Gene

Drugs & Compounds for MRPL13 Gene

No Compound Related Data Available

Transcripts for MRPL13 Gene

Unigene Clusters for MRPL13 Gene

Mitochondrial ribosomal protein L13:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MRPL13
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MRPL13 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for MRPL13 Gene

GeneLoc Exon Structure for
MRPL13
ECgene alternative splicing isoforms for
MRPL13

Expression for MRPL13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MRPL13 Gene

Protein differential expression in normal tissues from HIPED for MRPL13 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.7), Breast (11.0), Cervix (10.6), and Pancreas (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MRPL13 Gene



Protein tissue co-expression partners for MRPL13 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MRPL13 Gene:

MRPL13

SOURCE GeneReport for Unigene cluster for MRPL13 Gene:

Hs.333823

Evidence on tissue expression from TISSUES for MRPL13 Gene

  • Nervous system(4.4)
  • Adrenal gland(4.3)
  • Lung(2)
genes like me logo Genes that share expression patterns with MRPL13: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRPL13 Gene

Orthologs for MRPL13 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MRPL13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MRPL13 33 34
  • 99.25 (n)
oppossum
(Monodelphis domestica)
Mammalia MRPL13 34
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MRPL13 33 34
  • 90.45 (n)
cow
(Bos Taurus)
Mammalia MRPL13 33 34
  • 88.95 (n)
mouse
(Mus musculus)
Mammalia Mrpl13 33 16 34
  • 87.08 (n)
rat
(Rattus norvegicus)
Mammalia Mrpl13 33
  • 86.52 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MRPL13 34
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves MRPL13 34 33
  • 73.97 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MRPL13 34
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mrpl13 33
  • 68.94 (n)
Str.13427 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.33171 33
zebrafish
(Danio rerio)
Actinopterygii mrpl13 33 34
  • 70.22 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8416 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009908 33
  • 53.53 (n)
fruit fly
(Drosophila melanogaster)
Insecta mRpL13 35 33 34
  • 51.14 (n)
worm
(Caenorhabditis elegans)
Secernentea mrpl-13 33 34
  • 52.78 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D02508g 33
  • 49.86 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MRPL23 33 34 36
  • 47.32 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR403W 33
  • 46.43 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons emb1473 33
  • 48.95 (n)
rice
(Oryza sativa)
Liliopsida Os01g0749200 33
  • 51.44 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes mrpl23 33
  • 48.06 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU07852 33
  • 40.91 (n)
Species where no ortholog for MRPL13 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRPL13 Gene

ENSEMBL:
Gene Tree for MRPL13 (if available)
TreeFam:
Gene Tree for MRPL13 (if available)

Paralogs for MRPL13 Gene

No data available for Paralogs for MRPL13 Gene

Variants for MRPL13 Gene

Sequence variations from dbSNP and Humsavar for MRPL13 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000001753 -- 120,396,498(+) ATTTA(C/T)AGTAC intron-variant
rs1000051424 -- 120,441,179(+) AGTAG(A/G)TAAGA intron-variant
rs1000334227 -- 120,427,795(+) CCCAT(C/T)TCAAA intron-variant
rs1000381339 -- 120,400,821(+) GGGGT(A/G)TCACT intron-variant
rs1000394072 -- 120,407,851(+) CTTAC(A/G)TAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MRPL13 Gene

Variant ID Type Subtype PubMed ID
esv996748 CNV deletion 20482838
nsv470235 CNV loss 18288195

Variation tolerance for MRPL13 Gene

Residual Variation Intolerance Score: 52.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.98; 20.13% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRPL13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRPL13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRPL13 Gene

Disorders for MRPL13 Gene

Relevant External Links for MRPL13

Genetic Association Database (GAD)
MRPL13
Human Genome Epidemiology (HuGE) Navigator
MRPL13
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRPL13

No disorders were found for MRPL13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRPL13 Gene

Publications for MRPL13 Gene

  1. Structure of the large ribosomal subunit from human mitochondria. (PMID: 25278503) Brown A … Ramakrishnan V (Science (New York, N.Y.) 2014) 3 4 60
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 45 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders. (PMID: 11543634) Kenmochi N … Tanaka T (Genomics 2001) 2 3 60

Products for MRPL13 Gene

Sources for MRPL13 Gene

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