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Aliases for MRM2 Gene

Aliases for MRM2 Gene

  • Mitochondrial RRNA Methyltransferase 2 2 3 5
  • 16S RRNA (Uridine(1369)-2-O)-Methyltransferase 3 4
  • 16S RRNA [Um1369] 2-O-Methyltransferase 3 4
  • RRNA (Uridine-2-O-)-Methyltransferase 2 3
  • Protein FtsJ Homolog 2 3 4
  • FTSJ2 3 4
  • FJH1 3 4
  • MRM2 RNA Methyltransferase Homolog (S. Cerevisiae) 2
  • FtsJ RNA Methyltransferase Homolog 2 (E. Coli) 2
  • Putative Ribosomal RNA Methyltransferase 2 3
  • RRNA Methyltransferase 2, Mitochondrial 3
  • FtsJ RNA Methyltransferase Homolog 2 3
  • MRM2 RNA Methyltransferase Homolog 3
  • Epididymis Luminal Protein 97 3
  • Cell Division Protein FtsJ 3
  • FtsJ Homolog 2 3
  • EC 2.1.1.- 4
  • HEL97 3
  • RRMJ2 3

External Ids for MRM2 Gene

Previous HGNC Symbols for MRM2 Gene

  • FTSJ2

Summaries for MRM2 Gene

Entrez Gene Summary for MRM2 Gene

  • The protein encoded by this gene is a member of the S-adenosylmethionine-binding protein family. It is a nucleolar protein and it may be involved in the processing and modification of rRNA. This gene has been suggested to be involved in cell cycle control and DNA repair. [provided by RefSeq, Jul 2008]

GeneCards Summary for MRM2 Gene

MRM2 (Mitochondrial RRNA Methyltransferase 2) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression.

UniProtKB/Swiss-Prot for MRM2 Gene

  • S-adenosyl-L-methionine-dependent 2-O-ribose methyltransferase that catalyzes the formation of 2-O-methyluridine at position 1369 (Um1369) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a universally conserved modification in the peptidyl transferase domain of the mtLSU rRNA.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MRM2 Gene

Genomics for MRM2 Gene

Regulatory Elements for MRM2 Gene

Enhancers for MRM2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G002298 1.5 FANTOM5 Ensembl ENCODE 20.7 -58.0 -58021 3.8 HDGF PKNOX1 CREB3L1 SIN3A TCF12 FOS JUNB TBX21 SMARCA4 PBX2 MRM2 SNX8 NUDT1 MAD1L1 LFNG GC07P002305 IMMP1LP3
GH07G002304 1.2 Ensembl ENCODE 19.4 -62.7 -62731 0.9 ATF1 ARNT TCF12 GATA2 JUNB NCOA1 REST ZNF592 CREB3 MBD2 MRM2 NUDT1 MAD1L1 GC07P002305 IMMP1LP3
GH07G002236 1.4 FANTOM5 Ensembl ENCODE 15.1 +4.6 4610 2.3 HDGF TBP PKNOX1 BMI1 ZBTB40 RFX5 ZNF121 EGR1 ZNF143 RELB NUDT1 MRM2 LFNG SNX8 MAD1L1
GH07G002103 2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +134.0 133988 10.0 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 MRM2 NUDT1 MAD1L1 LFNG SNX8 LOC105375127 GC07P002097
GH07G002309 1.5 FANTOM5 ENCODE 12.3 -70.1 -70081 5.7 CREB3L1 MLX YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SNX8 MRM2 NUDT1 MAD1L1 GC07P002305 GC07M002345
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MRM2 on UCSC Golden Path with GeneCards custom track

Promoters for MRM2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000207742 98 1401 HDGF PKNOX1 AGO1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ZNF207

Genomic Location for MRM2 Gene

Chromosome:
7
Start:
2,234,231 bp from pter
End:
2,242,198 bp from pter
Size:
7,968 bases
Orientation:
Minus strand

Genomic View for MRM2 Gene

Genes around MRM2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MRM2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MRM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MRM2 Gene

Proteins for MRM2 Gene

  • Protein details for MRM2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UI43-MRM2_HUMAN
    Recommended name:
    rRNA methyltransferase 2, mitochondrial
    Protein Accession:
    Q9UI43
    Secondary Accessions:
    • Q24JR8

    Protein attributes for MRM2 Gene

    Size:
    246 amino acids
    Molecular mass:
    27424 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for MRM2 Gene

neXtProt entry for MRM2 Gene

Post-translational modifications for MRM2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MRM2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MRM2 Gene

Domains & Families for MRM2 Gene

Suggested Antigen Peptide Sequences for MRM2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UI43

UniProtKB/Swiss-Prot:

MRM2_HUMAN :
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.
genes like me logo Genes that share domains with MRM2: view

Function for MRM2 Gene

Molecular function for MRM2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
S-adenosyl-L-methionine + uridine(1369) in 16S rRNA = S-adenosyl-L-homocysteine + 2-O-methyluridine(1369) in 16S rRNA.
UniProtKB/Swiss-Prot Function:
S-adenosyl-L-methionine-dependent 2-O-ribose methyltransferase that catalyzes the formation of 2-O-methyluridine at position 1369 (Um1369) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a universally conserved modification in the peptidyl transferase domain of the mtLSU rRNA.

Enzyme Numbers (IUBMB) for MRM2 Gene

Gene Ontology (GO) - Molecular Function for MRM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity IEA --
GO:0008650 rRNA (uridine-2-O-)-methyltransferase activity NAS,EXP 11827451
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with MRM2: view
genes like me logo Genes that share phenotypes with MRM2: view

Animal Model Products

  • Taconic Biosciences Mouse Models for MRM2

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MRM2 Gene

Localization for MRM2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MRM2 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MRM2 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytosol 1

Gene Ontology (GO) - Cellular Components for MRM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA 11827451
GO:0005739 mitochondrion IEA,ISS --
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with MRM2: view

Pathways & Interactions for MRM2 Gene

genes like me logo Genes that share pathways with MRM2: view

Pathways by source for MRM2 Gene

Gene Ontology (GO) - Biological Process for MRM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000451 rRNA 2-O-methylation TAS --
GO:0001510 RNA methylation IEA --
GO:0006364 rRNA processing NAS 11827451
GO:0008283 cell proliferation NAS 11827451
GO:0031167 rRNA methylation NAS 11827451
genes like me logo Genes that share ontologies with MRM2: view

No data available for SIGNOR curated interactions for MRM2 Gene

Drugs & Compounds for MRM2 Gene

(2) Drugs for MRM2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
S-Adenosylmethionine Approved Nutra 0
s-adenosylhomocysteine Experimental Pharma 0
genes like me logo Genes that share compounds with MRM2: view

Transcripts for MRM2 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MRM2 Gene

No ASD Table

Relevant External Links for MRM2 Gene

GeneLoc Exon Structure for
MRM2
ECgene alternative splicing isoforms for
MRM2

Expression for MRM2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MRM2 Gene:

MRM2

mRNA Expression by UniProt/SwissProt for MRM2 Gene:

Q9UI43-MRM2_HUMAN
Tissue specificity: Widely expressed, with highest expression in muscle, placenta, and heart.

Evidence on tissue expression from TISSUES for MRM2 Gene

  • Nervous system(3.2)

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MRM2 Gene

Orthologs for MRM2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MRM2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FTSJ2 34 35
  • 99.05 (n)
cow
(Bos Taurus)
Mammalia FTSJ2 34 35
  • 84.99 (n)
dog
(Canis familiaris)
Mammalia FTSJ2 34 35
  • 81.51 (n)
mouse
(Mus musculus)
Mammalia Ftsj2 34 35
  • 80.11 (n)
Mrm2 16
rat
(Rattus norvegicus)
Mammalia Ftsj2 34
  • 79.81 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FTSJ2 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves FTSJ2 34 35
  • 63.68 (n)
lizard
(Anolis carolinensis)
Reptilia FTSJ2 35
  • 61 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ftsj2 34
  • 61.99 (n)
Str.10962 34
zebrafish
(Danio rerio)
Actinopterygii LOC555586 34
  • 60.49 (n)
FTSJ2 35
  • 47 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9100 34
fruit fly
(Drosophila melanogaster)
Insecta CG11447 34 35
  • 50.39 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004177 34
  • 49.4 (n)
worm
(Caenorhabditis elegans)
Secernentea F45G2.9 34 35
  • 49.35 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B01980g 34
  • 50.51 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL117C 34
  • 49.48 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MRM2 34 35
  • 46.73 (n)
Species where no ortholog for MRM2 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MRM2 Gene

ENSEMBL:
Gene Tree for MRM2 (if available)
TreeFam:
Gene Tree for MRM2 (if available)

Paralogs for MRM2 Gene

No data available for Paralogs for MRM2 Gene

Variants for MRM2 Gene

Sequence variations from dbSNP and Humsavar for MRM2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000310764 -- 2,243,017(+) GCAGA(A/T)GGGGG intron-variant, upstream-variant-2KB, reference, missense
rs1000947263 -- 2,236,774(+) CCCTT(A/G)GCTTA intron-variant
rs1001120038 -- 2,241,076(+) AGCTG(A/C)CTGCA intron-variant, upstream-variant-2KB
rs1001237146 -- 2,241,286(+) CGTGA(A/G)CCACC intron-variant, upstream-variant-2KB
rs1001864714 -- 2,241,431(+) GTGCA(C/G)CACCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MRM2 Gene

Variant ID Type Subtype PubMed ID
esv2761136 CNV gain 21179565
nsv1017814 CNV gain 25217958
nsv1018563 CNV gain 25217958
nsv1021173 CNV loss 25217958
nsv1021310 CNV loss 25217958
nsv830885 CNV loss 17160897
nsv830886 CNV loss 17160897

Variation tolerance for MRM2 Gene

Residual Variation Intolerance Score: 72.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.64; 31.51% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MRM2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MRM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MRM2 Gene

Disorders for MRM2 Gene

Relevant External Links for MRM2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MRM2

No disorders were found for MRM2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MRM2 Gene

Publications for MRM2 Gene

  1. Identification and characterization of FTSJ2, a novel human nucleolar protein homologous to bacterial ribosomal RNA methyltransferase. (PMID: 11827451) Ching Y.-P. … Jin D.-Y. (Genomics 2002) 2 3 4 22 64
  2. MRM2 and MRM3 are involved in biogenesis of the large subunit of the mitochondrial ribosome. (PMID: 25009282) Rorbach J. … Minczuk M. (Mol. Biol. Cell 2014) 2 3 4 64
  3. Assignment of 2'-O-methyltransferases to modification sites on the mammalian mitochondrial large subunit 16S rRNA. (PMID: 25074936) Lee K.W. … Bogenhagen D.F. (J. Biol. Chem. 2014) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131. (PMID: 26841866) Varier R.A. … Vermeulen M. (J. Biol. Chem. 2016) 3 64

Products for MRM2 Gene

Sources for MRM2 Gene

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