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MPTX1 Gene(Pseudogene)

Mucosal Pentraxin 1 (Pseudogene)

GCID:
GC01P159247
GIFtS:
13
Genes Participants
UDN Logo

Aliases for MPTX1 Gene

Aliases for MPTX1 Gene

  • Mucosal Pentraxin 1 (Pseudogene) 2 3 5
  • MPTX 3 4
  • Amyloid P Component, Serum Pseudogene 3

External Ids for MPTX1 Gene

Summaries for MPTX1 Gene

GeneCards Summary for MPTX1 Gene

MPTX1 (Mucosal Pentraxin 1 (Pseudogene)) is a Pseudogene.

Additional gene information for MPTX1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MPTX1 Gene

Genomics for MPTX1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MPTX1 Gene

Promoters and enhancers for MPTX1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I159211 Enhancer 0.7 Ensembl 0.2 -65.1 -65102 0.4 CTCF ARNT CEBPG RAD21 CC2D1A ARID2 SCRT2 SMC3 ZNF143 SCRT1 CADM3 AIM2 OR10J2P FCER1A OR10J3 DUSP23 ACKR1 CADM3-AS1 MPTX1
GH01I159229 Enhancer 0.5 ENCODE 0.2 -46.6 -46623 1.1 SP1 STAT1 HNF4A RCOR1 REST FCER1A CADM3-AS1 ACKR1 OR10J2P OR10J3 MPTX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MPTX1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MPTX1 Gene

Genomic Locations for MPTX1 Gene
chr1:159,276,503-159,277,182
(GRCh38/hg38)
Size:
680 bases
Orientation:
Plus strand
chr1:159,246,293-159,247,282
(GRCh37/hg19)

Genomic View for MPTX1 Gene

Genes around MPTX1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MPTX1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MPTX1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MPTX1 Gene

Proteins for MPTX1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for MPTX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MV57-MPTX_HUMAN
    Recommended name:
    Putative mucosal pentraxin homolog
    Protein Accession:
    A8MV57

    Protein attributes for MPTX1 Gene

    Size:
    137 amino acids
    Molecular mass:
    15138 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MPTX1 Gene

Post-translational modifications for MPTX1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MPTX1 Gene

Domains & Families for MPTX1 Gene

Gene Families for MPTX1 Gene

HGNC:

Protein Domains for MPTX1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MPTX1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MV57

UniProtKB/Swiss-Prot:

MPTX_HUMAN :
  • Belongs to the pentraxin family.
Family:
  • Belongs to the pentraxin family.
genes like me logo Genes that share domains with MPTX1: view

Function for MPTX1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MPTX1 Gene

Gene Ontology (GO) - Molecular Function for MPTX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with MPTX1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MPTX1 Gene

Localization for MPTX1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MPTX1 Gene

Pathways & Interactions for MPTX1 Gene

SuperPathways for MPTX1 Gene

PathCards logo More details on SuperPathways for MPTX1
No Data Available

Interacting Proteins for MPTX1 Gene

Gene Ontology (GO) - Biological Process for MPTX1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MPTX1 Gene

Drugs & Compounds for MPTX1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MPTX1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MPTX1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MPTX1 Gene

No ASD Table

Relevant External Links for MPTX1 Gene

GeneLoc Exon Structure for
MPTX1
ECgene alternative splicing isoforms for
MPTX1

Expression for MPTX1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MPTX1 Gene

mRNA expression in normal human tissues for MPTX1 Gene
mRNA expression by GTEx for MPTX1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MPTX1 Gene:

MPTX1

mRNA Expression by UniProt/SwissProt for MPTX1 Gene:

A8MV57-MPTX_HUMAN
Tissue specificity: Not expressed in the intestinal tract including ascending colon, descending colon and rectum. Not expressed in the human colon cancer cell lines HT-29 and CaCo-2.
genes like me logo Genes that share expression patterns with MPTX1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MPTX1 Gene

Orthologs for MPTX1 Gene

Evolution for MPTX1 Gene

ENSEMBL:
Gene Tree for MPTX1 (if available)
TreeFam:
Gene Tree for MPTX1 (if available)

No data available for Orthologs for MPTX1 Gene

Paralogs for MPTX1 Gene

(2) SIMAP similar genes for MPTX1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MPTX1: view

No data available for Paralogs for MPTX1 Gene

Variants for MPTX1 Gene

Additional Variant Information for MPTX1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MPTX1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MPTX1 Gene

Disorders for MPTX1 Gene

No disorders were found for MPTX1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MPTX1 Gene

Publications for MPTX1 Gene

  1. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 3 58
  2. Dietary modulation and structure prediction of rat mucosal pentraxin (Mptx) protein and loss of function in humans. (PMID: 18850182) van der Meer-van Kraaij C … Keijer J (Genes & nutrition 2007) 4 58
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58

Products for MPTX1 Gene

Sources for MPTX1 Gene

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