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MORF4 Gene

pseudogene   GIFtS: 31
GCID: GC04M174538

Mortality Factor 4

(Previous names: senescence (cellular)-related 1, mortality factor 4)
(Previous symbols: SEN, SEN1)
  See MORF4-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Mortality Factor 41 2
SEN11 2 5
SEN1 2
CSRB2 5
Senescence (Cellular)-Related 11
CSR2

External Ids:    HGNC: 157731   Entrez Gene: 109342   Ensembl: ENSG000002348017   OMIM: 1169605   

Export aliases for MORF4 gene to outside databases

Previous GC identifers: GC04M175456 GC04M175074 GC04M175232 GC04M174911 GC04M174773 GC04M170282


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MORF4 Gene:
Cellular senescence, the terminal nondividing state that normal cells enter following completion of their
proliferative potential, is the dominant phenotype in hybrids of normal and immortal cells. Fusions of immortal
human cell lines with each other have led to their assignment to 1 of several complementation groups. MORF4 is a
gene on chromosome 4 that induces a senescent-like phenotype in cell lines assigned to complementation group
B.(supplied by OMIM, Apr 2004)

GeneCards Summary for MORF4 Gene:
MORF4 (mortality factor 4) is a pseudogene. Diseases associated with MORF4 include ataxia with oculomotor apraxia type 2.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MORF4 gene promoter:
         ATF-2   MEF-2   POU3F2   Tal-1beta   MEF-2A   POU2F1   POU2F1a   COMP1   aMEF-2   ITF-2   
         Other transcription factors

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Epigenetics:
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Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q34.1   Ensembl cytogenetic band:  4q34.1   HGNC cytogenetic band: 4q34.1

MORF4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MORF4 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M174538:  view genomic region     (about GC identifiers)

Start:
174,537,087 bp from pter      End:
174,538,057 bp from pter
Size:
971 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:
     Genatlas biochemistry entry for MORF4:
mortality factor 4,expressed in keratinocyte lines,in the TSG4C region,not essential for human keratinocyte
immortality

Phenotypes:
     1 GenomeRNAi human phenotype for MORF4:
 Low eccentricity cells 

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol2

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MORF4 About    
See pathways by source

SuperPathContained pathways About
1RNA Polymerase I Promoter Opening
HATs acetylate histones0.34
Chromatin organization0.34
Chromatin modifying enzymes0.34



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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MORF4 gene: 
NM_006792.2  

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000447135 ENST00000434007
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4 AceView cDNA sequences:

NM_006792 D82751 BE814292 CD623274 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MORF4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MORF4 Expression
About this image

MORF4 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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  --

ENSEMBL Gene Tree for MORF4 (if available)
TreeFam Gene Tree for MORF4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MORF4
DNA2.0 Custom Variant and Variant Library Synthesis for MORF4

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 116960    OMIM disorders: --

1 disease for MORF4:    
About MalaCards
ataxia with oculomotor apraxia type 2

1 disease from the University of Copenhagen DISEASES database for MORF4:
Ataxia with oculomotor apraxia type 2

Find genes that share disorders with MORF4           About GenesLikeMe

Genetic Association Database (GAD): MORF4

Export disorders for MORF4 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MORF4 gene, integrated from 10 sources (see all 17):
(articles sorted by number of sources associating them with MORF4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A mortality gene(s) for the human adenocarcinoma line HeLa maps to a 130-kb region of human chromosome 4q22-q23. (PubMed id 12407449)1, 3 Bryce S.D....Parkinson E.K. (Neoplasia 2002)
  2. Identification of a gene that reverses the immortal phenotype of a subset of cells and is a member of a novel family of transcription factor-like genes. (PubMed id 9891081)1, 3 Bertram M.J.... Pereira-Smith O.M. (Mol. Cell. Biol. 1999)
  3. Genetic analysis of indefinite division in human cells: evidence for a cell senescence-related gene(s) on human chromosome 4. (PubMed id 2062841)1, 3 Ning Y....Pereira-Smith O.M. (Proc. Natl. Acad. Sci. U.S.A. 1991)
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
  5. Emerging role of the MORF/MRG gene family in various biological processes, including aging. (PubMed id 20536842)1 Chen M....Pereira-Smith O.M. (Ann. N. Y. Acad. Sci. 2010)
  6. The cell senescence inducing gene product MORF4 is regulated by degradation via the ubiquitin/proteasome pathway. (PubMed id 19769966)1 Tominaga K....Pereira-Smith O.M. (Exp. Cell Res. 2010)
  7. Conditional inactivation of MRG15 gene function limits survival during larval and adult stages of Drosophila melanogaster. (PubMed id 20600782)1 Zhang H....Tower J. (Exp. Gerontol. 2010)
  8. The role of the MORF/MRG family of genes in cell growth, differentiation, DNA repair, and thereby aging. (PubMed id 17460191)1 Pena A.N. and Pereira-Smith O.M. (Ann. N. Y. Acad. Sci. 2007)
  9. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PubMed id 17903294)4 Yang Q....O'Donnell C.J. (BMC Med. Genet. 2007)
  10. Role for the mortality factors MORF4, MRGX, and MRG15 in transcriptional repression via associations with Pf1, mSin3A, and transducin-like enhancer of Split. (PubMed id 12391155)1 Yochum G.S. and Ayer D.E. (Mol. Cell. Biol. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 10934 HGNC: 15773 AceView: MORF4 Ensembl:ENSG00000234801 euGenes: HUgn10934
ECgene: MORF4 H-InvDB: MORF4

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MORF4 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for MORF4 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MORF4 gene:
Search GeneIP for patents involving MORF4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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